Wall clock time and date at job start Tue Mar 31 2020 03:12:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81402 * 1 3 3 N 1.49351 * 108.33333 * 2 1 4 4 O 1.42096 * 114.65138 * 121.11023 * 2 1 3 5 5 N 1.65608 * 108.33050 * 242.21608 * 2 1 3 6 6 C 1.46957 * 120.59257 * 179.97438 * 5 2 1 7 7 C 1.53374 * 108.63715 * 235.24781 * 6 5 2 8 8 N 1.46970 * 108.63310 * 310.57986 * 7 6 5 9 9 C 1.34775 * 120.59431 * 235.20305 * 8 7 6 10 10 O 1.21591 * 119.99652 * 5.20699 * 9 8 7 11 11 N 1.34770 * 120.00304 * 185.21314 * 9 8 7 12 12 C 1.46504 * 120.00297 * 175.00304 * 11 9 8 13 13 C 1.50703 * 109.47127 * 179.97438 * 12 11 9 14 14 H 1.08003 * 119.99724 * 0.02562 * 13 12 11 15 15 C 1.37875 * 119.99967 * 180.02562 * 13 12 11 16 16 N 1.31512 * 119.99874 * 0.02562 * 15 13 12 17 17 Si 1.86796 * 119.99930 * 180.02562 * 15 13 12 18 18 H 1.48495 * 109.47368 * 60.00106 * 17 15 13 19 19 H 1.48499 * 109.46964 * 180.02562 * 17 15 13 20 20 H 1.48502 * 109.47207 * 299.99657 * 17 15 13 21 21 C 1.46962 * 118.81199 * 55.47502 * 8 7 6 22 22 C 1.46968 * 120.59057 * 0.02562 * 5 2 1 23 23 H 1.08993 * 109.47270 * 178.89495 * 1 2 3 24 24 H 1.09005 * 109.46932 * 298.89225 * 1 2 3 25 25 H 1.08995 * 109.47283 * 58.88501 * 1 2 3 26 26 H 0.96999 * 119.99871 * 62.47336 * 3 2 1 27 27 H 1.09006 * 109.60985 * 115.50853 * 6 5 2 28 28 H 1.08997 * 109.75838 * 355.07931 * 6 5 2 29 29 H 1.08997 * 109.61198 * 190.83751 * 7 6 5 30 30 H 1.08998 * 109.60858 * 70.31848 * 7 6 5 31 31 H 0.97005 * 119.99983 * 355.00014 * 11 9 8 32 32 H 1.09000 * 109.46759 * 60.00230 * 12 11 9 33 33 H 1.08997 * 109.47140 * 299.99691 * 12 11 9 34 34 H 0.96998 * 119.99790 * 180.02562 * 16 15 13 35 35 H 1.09001 * 109.60690 * 64.26663 * 21 8 7 36 36 H 1.09001 * 109.61175 * 184.77391 * 21 8 7 37 37 H 1.09007 * 109.60191 * 244.49134 * 22 5 2 38 38 H 1.08994 * 109.60993 * 4.83073 * 22 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 7 2.2838 1.4177 0.0000 4 8 2.4067 -0.6673 1.1057 5 7 2.3349 -0.7328 -1.3908 6 6 3.7709 -0.8778 -1.6672 7 6 4.0734 -0.2473 -3.0322 8 7 3.1077 -0.7638 -4.0124 9 6 3.5315 -1.3594 -5.1447 10 8 4.7182 -1.5585 -5.3193 11 7 2.6401 -1.7342 -6.0834 12 6 3.1067 -2.2810 -7.3599 13 6 1.9201 -2.6191 -8.2253 14 1 0.9186 -2.4438 -7.8610 15 6 2.1130 -3.1523 -9.4820 16 7 3.3325 -3.3663 -9.9254 17 14 0.6423 -3.5707 -10.5549 18 1 -0.1536 -2.3423 -10.8048 19 1 1.1152 -4.1263 -11.8483 20 1 -0.2039 -4.5770 -9.8645 21 6 1.6716 -0.6138 -3.7386 22 6 1.3691 -1.2487 -2.3712 23 1 -0.3633 -1.0274 -0.0198 24 1 -0.3633 0.4966 0.8998 25 1 -0.3633 0.5310 -0.8798 26 1 2.0678 2.0002 0.7450 27 1 4.0349 -1.9352 -1.6862 28 1 4.3480 -0.3706 -0.8941 29 1 5.0848 -0.5114 -3.3411 30 1 3.9804 0.8365 -2.9633 31 1 1.6894 -1.6419 -5.9138 32 1 3.6911 -3.1827 -7.1769 33 1 3.7275 -1.5421 -7.8665 34 1 3.4683 -3.7411 -10.8097 35 1 1.4117 0.4446 -3.7187 36 1 1.0965 -1.1197 -4.5141 37 1 1.4618 -2.3326 -2.4403 38 1 0.3576 -0.9870 -2.0609 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001672243760.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:12:13 Heat of formation + Delta-G solvation = -32.204533 kcal Electronic energy + Delta-G solvation = -21656.499247 eV Core-core repulsion = 18275.735968 eV Total energy + Delta-G solvation = -3380.763279 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 290.120 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.30654 -38.77526 -37.25895 -36.19983 -35.07172 -34.21555 -32.89695 -32.60086 -30.04652 -29.47000 -27.77861 -25.17735 -24.47290 -23.00718 -21.04343 -20.29930 -18.95918 -18.11301 -17.69187 -17.53974 -17.25972 -16.84333 -16.61944 -16.40896 -15.55455 -15.39300 -15.29798 -14.91063 -14.85943 -14.17183 -14.04102 -14.00825 -13.80407 -13.55185 -13.32056 -12.88104 -12.67895 -12.64392 -12.59979 -12.40007 -12.16345 -11.97842 -11.46419 -11.13577 -10.76652 -10.73710 -10.42883 -9.98506 -9.90059 -9.28745 -8.25084 -6.41755 -1.03754 1.45805 1.50825 1.51755 1.59045 1.85689 2.22378 2.41594 2.91241 3.10256 3.16178 3.26327 3.49721 3.83075 4.01910 4.11307 4.18168 4.20214 4.25084 4.34964 4.54201 4.64103 4.78932 4.87522 4.99400 5.06759 5.11912 5.30448 5.30934 5.48875 5.56210 5.72478 5.87728 6.12611 6.52521 6.69908 7.20485 7.28717 7.71660 8.87134 Molecular weight = 290.12amu Principal moments of inertia in cm(-1) A = 0.032367 B = 0.003431 C = 0.003193 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 864.883803 B = 8158.123584 C = 8768.129332 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.657 4.657 2 S 2.553 3.447 3 N -1.341 6.341 4 O -1.042 7.042 5 N -0.953 5.953 6 C 0.130 3.870 7 C 0.118 3.882 8 N -0.626 5.626 9 C 0.693 3.307 10 O -0.647 6.647 11 N -0.721 5.721 12 C 0.285 3.715 13 C -0.553 4.553 14 H 0.087 0.913 15 C 0.003 3.997 16 N -0.933 5.933 17 Si 0.986 3.014 18 H -0.261 1.261 19 H -0.289 1.289 20 H -0.260 1.260 21 C 0.087 3.913 22 C 0.093 3.907 23 H 0.142 0.858 24 H 0.144 0.856 25 H 0.157 0.843 26 H 0.390 0.610 27 H 0.074 0.926 28 H 0.098 0.902 29 H 0.082 0.918 30 H 0.085 0.915 31 H 0.404 0.596 32 H -0.016 1.016 33 H -0.017 1.017 34 H 0.268 0.732 35 H 0.097 0.903 36 H 0.103 0.897 37 H 0.089 0.911 38 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.341 7.031 19.561 24.699 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.815 4.815 2 S 2.649 3.351 3 N -1.170 6.170 4 O -1.018 7.018 5 N -0.787 5.787 6 C 0.004 3.996 7 C -0.007 4.007 8 N -0.364 5.364 9 C 0.395 3.605 10 O -0.530 6.530 11 N -0.377 5.377 12 C 0.162 3.838 13 C -0.591 4.591 14 H 0.105 0.895 15 C -0.196 4.196 16 N -0.571 5.571 17 Si 0.809 3.191 18 H -0.185 1.185 19 H -0.215 1.215 20 H -0.185 1.185 21 C -0.037 4.037 22 C -0.032 4.032 23 H 0.160 0.840 24 H 0.163 0.837 25 H 0.176 0.824 26 H 0.219 0.781 27 H 0.092 0.908 28 H 0.116 0.884 29 H 0.101 0.899 30 H 0.103 0.897 31 H 0.242 0.758 32 H 0.002 0.998 33 H 0.001 0.999 34 H 0.077 0.923 35 H 0.116 0.884 36 H 0.121 0.879 37 H 0.107 0.893 38 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -11.569 6.561 19.353 23.483 hybrid contribution -1.021 -0.155 -0.256 1.064 sum -12.590 6.406 19.097 23.754 Atomic orbital electron populations 1.30678 1.24140 1.13030 1.13687 1.07384 0.79679 0.76396 0.71687 1.71724 1.65534 1.26533 1.53222 1.93456 1.75821 1.81098 1.51457 1.56046 1.12812 1.74240 1.35650 1.21711 0.79328 1.01813 0.96738 1.21815 0.93429 0.98739 0.86666 1.47128 1.08172 1.61862 1.19201 1.16240 0.84830 0.78597 0.80876 1.90835 1.17738 1.63870 1.80537 1.45415 1.09014 1.67009 1.16230 1.18401 0.94960 0.91212 0.79220 1.21565 0.93212 1.43615 1.00693 0.89509 1.26071 0.99405 0.94778 0.99368 1.70144 1.23217 1.44257 1.19500 0.85193 0.77936 0.79087 0.76888 1.18527 1.21483 1.18486 1.22422 0.79931 1.03424 0.97902 1.22500 0.92918 1.00457 0.87351 0.83951 0.83747 0.82440 0.78143 0.90754 0.88397 0.89937 0.89715 0.75750 0.99808 0.99900 0.92322 0.88438 0.87902 0.89303 0.83796 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.66 -2.12 9.24 113.37 1.05 -1.07 16 2 S 2.55 37.50 5.32 -56.49 -0.30 37.20 16 3 N -1.34 -25.92 14.07 37.02 0.52 -25.40 16 4 O -1.04 -26.83 18.13 -148.98 -2.70 -29.54 16 5 N -0.95 -14.80 3.32 -511.52 -1.70 -16.50 16 6 C 0.13 2.76 6.70 86.42 0.58 3.34 16 7 C 0.12 3.05 6.60 86.42 0.57 3.62 16 8 N -0.63 -17.59 2.94 -835.23 -2.46 -20.05 16 9 C 0.69 28.27 8.29 179.06 1.49 29.76 16 10 O -0.65 -33.22 15.76 -4.00 -0.06 -33.28 16 11 N -0.72 -29.78 5.46 -482.29 -2.63 -32.41 16 12 C 0.29 15.49 5.43 85.63 0.47 15.96 16 13 C -0.55 -29.12 9.28 25.60 0.24 -28.88 16 14 H 0.09 4.02 7.60 -2.91 -0.02 3.99 16 15 C 0.00 0.18 5.46 84.65 0.46 0.64 16 16 N -0.93 -55.71 13.29 21.45 0.28 -55.43 16 17 Si 0.99 40.93 29.54 68.60 2.03 42.96 16 18 H -0.26 -10.16 7.11 99.48 0.71 -9.45 16 19 H -0.29 -12.09 7.11 99.48 0.71 -11.38 16 20 H -0.26 -10.12 7.11 99.48 0.71 -9.41 16 21 C 0.09 1.44 6.59 86.55 0.57 2.01 16 22 C 0.09 0.98 6.66 86.55 0.58 1.55 16 23 H 0.14 -0.07 7.96 -2.39 -0.02 -0.09 16 24 H 0.14 0.23 8.14 -2.39 -0.02 0.22 16 25 H 0.16 -0.18 7.66 -2.39 -0.02 -0.20 16 26 H 0.39 6.77 8.92 -104.95 -0.94 5.83 16 27 H 0.07 1.65 8.14 -2.38 -0.02 1.63 16 28 H 0.10 2.03 7.91 -2.39 -0.02 2.02 16 29 H 0.08 2.53 6.99 -2.39 -0.02 2.52 16 30 H 0.08 2.01 8.14 -2.39 -0.02 1.99 16 31 H 0.40 13.17 5.79 -92.70 -0.54 12.63 16 32 H -0.02 -0.99 8.14 -2.39 -0.02 -1.01 16 33 H -0.02 -1.05 8.14 -2.39 -0.02 -1.07 16 34 H 0.27 15.00 8.31 -92.71 -0.77 14.23 16 35 H 0.10 1.25 8.14 -2.39 -0.02 1.24 16 36 H 0.10 1.56 5.61 -2.39 -0.01 1.54 16 37 H 0.09 0.99 8.14 -2.38 -0.02 0.97 16 38 H 0.14 0.03 5.57 -2.39 -0.01 0.02 16 Total: -1.00 -87.91 322.73 -1.41 -89.32 By element: Atomic # 1 Polarization: 16.58 SS G_CDS: -0.38 Total: 16.20 kcal Atomic # 6 Polarization: 20.93 SS G_CDS: 5.99 Total: 26.92 kcal Atomic # 7 Polarization: -143.80 SS G_CDS: -5.98 Total: -149.79 kcal Atomic # 8 Polarization: -60.05 SS G_CDS: -2.76 Total: -62.82 kcal Atomic # 14 Polarization: 40.93 SS G_CDS: 2.03 Total: 42.96 kcal Atomic # 16 Polarization: 37.50 SS G_CDS: -0.30 Total: 37.20 kcal Total: -87.91 -1.41 -89.32 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001672243760.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.115 kcal (2) G-P(sol) polarization free energy of solvation -87.911 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.796 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.409 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.320 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.205 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds