Wall clock time and date at job start Tue Mar 31 2020 03:02:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35996 * 116.99869 * 2 1 4 4 C 1.38702 * 119.97725 * 180.02562 * 3 2 1 5 5 C 1.38121 * 120.01921 * 180.02562 * 4 3 2 6 6 C 1.38864 * 119.97803 * 359.97438 * 5 4 3 7 7 N 1.39935 * 120.01715 * 179.97438 * 6 5 4 8 8 C 1.46905 * 110.99677 * 180.02562 * 7 6 5 9 9 C 1.53243 * 109.33672 * 187.25443 * 8 7 6 10 10 N 1.47076 * 108.52280 * 306.17389 * 9 8 7 11 11 C 1.34777 * 120.88062 * 231.18540 * 10 9 8 12 12 O 1.21687 * 120.00006 * 5.22924 * 11 10 9 13 13 C 1.46376 * 120.00313 * 185.22734 * 11 10 9 14 14 H 1.07997 * 119.99552 * 354.99977 * 13 11 10 15 15 C 1.40044 * 120.00321 * 175.00114 * 13 11 10 16 16 N 1.30673 * 119.99689 * 359.97438 * 15 13 11 17 17 Si 1.86795 * 120.00192 * 180.02562 * 15 13 11 18 18 H 1.48505 * 109.47087 * 179.97438 * 17 15 13 19 19 H 1.48501 * 109.47042 * 299.99758 * 17 15 13 20 20 H 1.48503 * 109.47023 * 59.99987 * 17 15 13 21 21 C 1.47077 * 118.23996 * 51.45605 * 10 9 8 22 22 C 1.46898 * 111.00233 * 304.30287 * 7 6 5 23 23 C 1.38860 * 119.96198 * 0.27790 * 6 5 4 24 24 C 1.38119 * 119.98114 * 359.46396 * 23 6 5 25 25 H 1.08997 * 109.47372 * 59.99584 * 1 2 3 26 26 H 1.09003 * 109.47397 * 180.02562 * 1 2 3 27 27 H 1.08997 * 109.47004 * 299.99534 * 1 2 3 28 28 H 1.07994 * 119.99639 * 0.02562 * 4 3 2 29 29 H 1.07997 * 120.00995 * 179.97438 * 5 4 3 30 30 H 1.08994 * 109.49159 * 67.30249 * 8 7 6 31 31 H 1.08996 * 109.49043 * 307.21365 * 8 7 6 32 32 H 1.08999 * 109.62657 * 186.46027 * 9 8 7 33 33 H 1.09002 * 109.78902 * 65.97743 * 9 8 7 34 34 H 0.97000 * 120.00181 * 180.02562 * 16 15 13 35 35 H 1.09007 * 109.62715 * 68.25082 * 21 10 9 36 36 H 1.09000 * 109.63081 * 188.83321 * 21 10 9 37 37 H 1.09001 * 109.49368 * 292.70611 * 22 7 6 38 38 H 1.08999 * 109.49029 * 52.75926 * 22 7 6 39 39 H 1.07995 * 120.01013 * 179.70576 * 23 6 5 40 40 H 1.07993 * 119.99120 * 180.25578 * 24 23 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2117 0.0000 4 6 3.4315 1.2838 -0.0005 5 6 4.0594 2.5140 0.0000 6 6 3.3035 3.6789 0.0005 7 7 3.9388 4.9257 0.0016 8 6 2.9558 6.0174 0.0026 9 6 3.6822 7.3545 -0.1788 10 7 4.7300 7.4600 0.8479 11 6 4.8252 8.5541 1.6292 12 8 3.9826 9.4290 1.5563 13 6 5.9421 8.6900 2.5655 14 1 6.6448 7.8792 2.6889 15 6 6.0995 9.8712 3.3011 16 7 5.2495 10.8523 3.1513 17 14 7.5253 10.0448 4.4954 18 1 7.4681 11.3796 5.1439 19 1 7.4340 8.9858 5.5325 20 1 8.8074 9.9074 3.7589 21 6 5.6750 6.3427 0.9953 22 6 4.8661 5.0431 1.1349 23 6 1.9168 3.6058 0.0064 24 6 1.2906 2.3747 0.0004 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3633 0.5137 0.8900 28 1 4.0193 0.3778 -0.0014 29 1 5.1380 2.5700 0.0000 30 1 2.4179 6.0215 0.9506 31 1 2.2506 5.8726 -0.8157 32 1 2.9735 8.1746 -0.0644 33 1 4.1347 7.3971 -1.1695 34 1 5.3586 11.6706 3.6606 35 1 6.3157 6.2864 0.1152 36 1 6.2844 6.4936 1.8864 37 1 4.3011 5.0610 2.0668 38 1 5.5462 4.1913 1.1381 39 1 1.3282 4.5112 0.0116 40 1 0.2122 2.3177 0.0008 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000000355247.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:02:58 Heat of formation + Delta-G solvation = -23.021398 kcal Electronic energy + Delta-G solvation = -22813.207178 eV Core-core repulsion = 19400.938502 eV Total energy + Delta-G solvation = -3412.268676 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -40.47732 -39.17296 -37.54919 -35.87970 -33.32653 -32.53051 -31.57821 -30.45915 -29.25812 -27.61118 -26.43978 -25.37396 -23.84717 -22.01396 -21.62699 -20.64834 -18.90007 -18.35077 -17.08067 -16.27150 -16.18167 -15.85036 -15.46776 -14.98850 -14.71125 -14.43222 -14.22152 -14.03181 -13.82495 -13.63763 -13.21522 -12.73470 -12.62936 -12.48470 -12.09205 -11.82824 -11.54013 -11.34454 -11.21824 -11.14155 -10.92314 -10.82693 -10.71649 -10.55800 -10.27583 -10.04070 -9.28582 -9.02867 -8.88301 -7.63883 -7.47617 -7.24928 -6.23653 -4.69170 1.28717 1.42125 3.13060 3.17596 3.18314 3.19714 3.62243 3.98296 4.07435 4.49290 4.54252 4.68833 4.78813 4.91847 4.93356 5.18760 5.23002 5.28008 5.32147 5.39480 5.51775 5.60070 5.61099 5.74767 5.77133 5.92337 5.94427 6.02830 6.11233 6.28713 6.37933 6.39659 6.46306 6.57751 6.62752 7.16813 7.22044 7.41084 7.46249 7.54255 8.07642 8.30432 8.97904 9.38272 10.52952 10.71423 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.031924 B = 0.003255 C = 0.003130 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 876.867827 B = 8600.938514 C = 8944.673184 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.322 6.322 3 C 0.090 3.910 4 C -0.125 4.125 5 C -0.104 4.104 6 C 0.088 3.912 7 N -0.485 5.485 8 C 0.040 3.960 9 C 0.124 3.876 10 N -0.645 5.645 11 C 0.560 3.440 12 O -0.578 6.578 13 C -0.545 4.545 14 H 0.072 0.928 15 C 0.088 3.912 16 N -0.768 5.768 17 Si 0.907 3.093 18 H -0.280 1.280 19 H -0.267 1.267 20 H -0.267 1.267 21 C 0.127 3.873 22 C 0.044 3.956 23 C -0.135 4.135 24 C -0.179 4.179 25 H 0.053 0.947 26 H 0.096 0.904 27 H 0.053 0.947 28 H 0.130 0.870 29 H 0.133 0.867 30 H 0.046 0.954 31 H 0.080 0.920 32 H 0.090 0.910 33 H 0.051 0.949 34 H 0.269 0.731 35 H 0.053 0.947 36 H 0.099 0.901 37 H 0.046 0.954 38 H 0.081 0.919 39 H 0.130 0.870 40 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.103 -18.443 -5.252 19.844 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.236 6.236 3 C 0.044 3.956 4 C -0.144 4.144 5 C -0.125 4.125 6 C -0.010 4.010 7 N -0.201 5.201 8 C -0.087 4.087 9 C -0.001 4.001 10 N -0.384 5.384 11 C 0.366 3.634 12 O -0.460 6.460 13 C -0.581 4.581 14 H 0.090 0.910 15 C -0.132 4.132 16 N -0.396 5.396 17 Si 0.732 3.268 18 H -0.205 1.205 19 H -0.192 1.192 20 H -0.192 1.192 21 C 0.002 3.998 22 C -0.082 4.082 23 C -0.156 4.156 24 C -0.199 4.199 25 H 0.071 0.929 26 H 0.115 0.885 27 H 0.071 0.929 28 H 0.148 0.852 29 H 0.150 0.850 30 H 0.065 0.935 31 H 0.098 0.902 32 H 0.108 0.892 33 H 0.069 0.931 34 H 0.080 0.920 35 H 0.071 0.929 36 H 0.117 0.883 37 H 0.064 0.936 38 H 0.099 0.901 39 H 0.148 0.852 40 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -5.230 -17.792 -5.639 19.383 hybrid contribution -0.031 0.048 1.104 1.106 sum -5.261 -17.744 -4.535 19.055 Atomic orbital electron populations 1.22989 0.78845 1.03562 1.01227 1.86051 1.20989 1.27109 1.89476 1.18901 0.92322 0.83966 1.00364 1.20254 0.91240 0.98146 1.04806 1.20626 0.99876 0.90077 1.01891 1.19058 0.91781 0.90530 0.99606 1.59174 1.18685 1.00291 1.41917 1.22718 0.93760 0.91350 1.00920 1.21233 0.92006 0.94911 0.91920 1.48278 1.31925 1.19756 1.38464 1.18256 0.86386 0.79007 0.79765 1.90590 1.43590 1.40923 1.70943 1.20927 1.11388 1.01781 1.24030 0.90963 1.25728 0.96180 0.95124 0.96194 1.70000 1.32045 1.03719 1.33874 0.86442 0.81800 0.77998 0.80600 1.20539 1.19227 1.19189 1.21628 0.91663 0.84224 1.02313 1.22841 0.95075 0.99951 0.90375 1.21181 0.93803 0.97782 1.02839 1.21062 0.99684 0.92038 1.07069 0.92853 0.88541 0.92855 0.85245 0.84952 0.93550 0.90171 0.89204 0.93079 0.91981 0.92911 0.88328 0.93593 0.90074 0.85195 0.85730 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 9.81 101.05 0.99 1.20 16 2 O -0.32 -3.62 10.50 -19.73 -0.21 -3.82 16 3 C 0.09 1.09 6.69 -39.24 -0.26 0.83 16 4 C -0.13 -1.49 9.98 -39.45 -0.39 -1.88 16 5 C -0.10 -1.30 9.14 -39.39 -0.36 -1.66 16 6 C 0.09 1.24 5.65 -83.70 -0.47 0.76 16 7 N -0.49 -7.47 4.68 -170.48 -0.80 -8.26 16 8 C 0.04 0.65 4.30 -3.70 -0.02 0.63 16 9 C 0.12 2.42 6.61 -3.60 -0.02 2.40 16 10 N -0.65 -14.56 3.00 -173.83 -0.52 -15.09 16 11 C 0.56 15.74 7.63 -12.99 -0.10 15.65 16 12 O -0.58 -18.50 14.49 5.20 0.08 -18.43 16 13 C -0.54 -15.00 8.86 -35.63 -0.32 -15.31 16 14 H 0.07 1.79 5.74 -52.49 -0.30 1.49 16 15 C 0.09 2.41 5.50 -17.37 -0.10 2.31 16 16 N -0.77 -22.77 11.84 55.55 0.66 -22.11 16 17 Si 0.91 19.75 29.56 -169.99 -5.02 14.73 16 18 H -0.28 -6.00 7.11 56.52 0.40 -5.60 16 19 H -0.27 -5.66 7.11 56.52 0.40 -5.25 16 20 H -0.27 -5.64 7.11 56.52 0.40 -5.24 16 21 C 0.13 2.32 6.50 -3.36 -0.02 2.30 16 22 C 0.04 0.68 5.44 -3.46 -0.02 0.66 16 23 C -0.14 -1.77 8.83 -39.39 -0.35 -2.11 16 24 C -0.18 -2.11 9.03 -39.46 -0.36 -2.47 16 25 H 0.05 0.35 7.66 -51.93 -0.40 -0.05 16 26 H 0.10 0.50 8.14 -51.93 -0.42 0.07 16 27 H 0.05 0.36 7.66 -51.93 -0.40 -0.04 16 28 H 0.13 1.30 8.06 -52.49 -0.42 0.88 16 29 H 0.13 1.46 7.15 -52.49 -0.38 1.08 16 30 H 0.05 0.80 7.81 -51.93 -0.41 0.39 16 31 H 0.08 1.11 6.90 -51.93 -0.36 0.75 16 32 H 0.09 1.93 7.04 -51.93 -0.37 1.56 16 33 H 0.05 0.95 8.14 -51.93 -0.42 0.52 16 34 H 0.27 7.27 8.29 -40.82 -0.34 6.93 16 35 H 0.05 0.91 8.14 -51.92 -0.42 0.49 16 36 H 0.10 1.85 5.46 -51.93 -0.28 1.57 16 37 H 0.05 0.78 8.14 -51.93 -0.42 0.35 16 38 H 0.08 1.05 6.66 -51.93 -0.35 0.70 16 39 H 0.13 1.61 5.80 -52.49 -0.30 1.30 16 40 H 0.12 1.18 6.29 -52.49 -0.33 0.85 16 LS Contribution 322.43 15.07 4.86 4.86 Total: -1.00 -34.18 322.43 -7.86 -42.04 By element: Atomic # 1 Polarization: 7.89 SS G_CDS: -5.11 Total: 2.78 kcal Atomic # 6 Polarization: 5.10 SS G_CDS: -1.79 Total: 3.31 kcal Atomic # 7 Polarization: -44.80 SS G_CDS: -0.66 Total: -45.46 kcal Atomic # 8 Polarization: -22.12 SS G_CDS: -0.13 Total: -22.25 kcal Atomic # 14 Polarization: 19.75 SS G_CDS: -5.02 Total: 14.73 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -34.18 -7.86 -42.04 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000000355247.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.018 kcal (2) G-P(sol) polarization free energy of solvation -34.175 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.157 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.864 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.039 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.021 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds