Wall clock time and date at job start Tue Mar 31 2020 02:33:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52997 * 110.40371 * 2 1 4 4 C 1.52178 * 110.36072 * 237.72120 * 2 1 3 5 5 O 1.20760 * 127.32588 * 61.41923 * 4 2 1 6 6 C 1.53523 * 105.34217 * 241.45429 * 4 2 1 7 7 C 1.50696 * 116.43827 * 199.35605 * 6 4 2 8 8 O 1.21297 * 119.99680 * 111.95375 * 7 6 4 9 9 N 1.34781 * 120.00028 * 291.94960 * 7 6 4 10 10 C 1.37090 * 119.99918 * 5.63639 * 9 7 6 11 11 H 1.08005 * 120.00622 * 16.29865 * 10 9 7 12 12 C 1.38953 * 119.99687 * 196.30572 * 10 9 7 13 13 N 1.31408 * 120.00081 * 14.67233 * 12 10 9 14 14 Si 1.86798 * 120.00031 * 194.66795 * 12 10 9 15 15 H 1.48507 * 109.47091 * 0.02562 * 14 12 10 16 16 H 1.48500 * 109.46967 * 119.99708 * 14 12 10 17 17 H 1.48497 * 109.47603 * 240.00131 * 14 12 10 18 18 C 1.46498 * 119.99660 * 185.62894 * 9 7 6 19 19 C 1.47204 * 109.47193 * 83.53625 * 18 9 7 20 20 N 7.54953 * 116.31654 * 200.32454 * 2 1 3 21 21 C 1.55921 * 104.55443 * 70.14220 * 6 4 2 22 22 C 1.54615 * 104.58758 * 289.52527 * 21 6 4 23 23 C 1.55964 * 110.35883 * 122.27445 * 2 1 3 24 24 H 1.09002 * 116.10483 * 278.56844 * 23 2 1 25 25 C 1.56926 * 100.84154 * 325.95930 * 6 4 2 26 26 H 1.08997 * 109.47591 * 288.66665 * 1 2 3 27 27 H 1.08998 * 109.47095 * 48.67214 * 1 2 3 28 28 H 1.09009 * 109.47090 * 168.66931 * 1 2 3 29 29 H 1.09010 * 109.46941 * 182.27351 * 3 2 1 30 30 H 1.08993 * 109.47287 * 302.26839 * 3 2 1 31 31 H 1.08995 * 109.47185 * 62.27958 * 3 2 1 32 32 H 0.96998 * 120.00086 * 180.02562 * 13 12 10 33 33 H 1.09004 * 109.46830 * 203.53521 * 18 9 7 34 34 H 1.08999 * 109.47347 * 323.53487 * 18 9 7 35 35 H 1.09002 * 110.42060 * 48.30594 * 21 6 4 36 36 H 1.09004 * 110.41503 * 170.63788 * 21 6 4 37 37 H 1.08993 * 110.43951 * 241.58476 * 22 21 6 38 38 H 1.09002 * 110.43236 * 119.07934 * 22 21 6 39 39 H 1.08994 * 112.08795 * 296.74399 * 25 6 4 40 40 H 1.09002 * 112.08450 * 170.05675 * 25 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0634 1.4340 0.0000 4 6 2.0595 -0.7619 -1.2062 5 8 1.8835 -0.5009 -2.3721 6 6 2.8641 -1.9334 -0.6255 7 6 3.8603 -2.5861 -1.5488 8 8 5.0489 -2.4774 -1.3329 9 7 3.4305 -3.2907 -2.6144 10 6 2.0955 -3.3181 -2.9248 11 1 1.4264 -2.5858 -2.4974 12 6 1.6030 -4.2880 -3.7893 13 7 2.3343 -5.3399 -4.0818 14 14 -0.0987 -4.0968 -4.5357 15 1 -0.7128 -2.8345 -4.0511 16 1 0.0119 -4.0564 -6.0161 17 1 -0.9477 -5.2469 -4.1339 18 6 4.3900 -4.0272 -3.4408 19 6 4.6648 -5.3359 -2.8254 20 7 4.8769 -6.3458 -2.3505 21 6 1.7892 -2.8787 -0.0073 22 6 1.2671 -2.1166 1.2325 23 6 2.0726 -0.7808 1.2363 24 1 2.1027 -0.2296 2.1762 25 6 3.4521 -1.2735 0.6711 26 1 -0.3634 0.3289 0.9735 27 1 -0.3633 0.6786 -0.7717 28 1 -0.3634 -1.0077 -0.2019 29 1 3.1526 1.4165 -0.0408 30 1 1.6759 1.9658 -0.8689 31 1 1.7420 1.9412 0.9097 32 1 1.9907 -6.0168 -4.6856 33 1 3.9734 -4.1745 -4.4372 34 1 5.3171 -3.4588 -3.5151 35 1 0.9798 -3.0498 -0.7170 36 1 2.2407 -3.8256 0.2887 37 1 1.4678 -2.6846 2.1408 38 1 0.1999 -1.9173 1.1352 39 1 4.1209 -0.4440 0.4417 40 1 3.9250 -2.0060 1.3254 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000001805568.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:33:22 Heat of formation + Delta-G solvation = -38.532239 kcal Electronic energy + Delta-G solvation = -24891.827556 eV Core-core repulsion = 21478.886279 eV Total energy + Delta-G solvation = -3412.941276 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.60498 -40.14425 -38.57684 -37.48286 -36.40340 -34.42322 -33.48339 -30.67757 -30.04056 -28.41490 -27.65404 -26.67907 -25.08191 -22.78691 -21.70588 -20.78167 -19.46224 -19.24932 -18.16588 -17.94670 -17.00014 -16.60738 -16.32519 -15.92635 -15.82153 -15.42725 -15.01852 -14.83785 -14.46216 -14.18461 -13.78200 -13.66710 -13.64295 -13.49752 -13.26404 -13.14669 -13.00381 -12.97638 -12.84149 -12.55736 -12.46740 -12.20515 -12.11485 -12.04985 -11.91893 -11.70798 -11.26360 -11.17242 -11.04375 -10.65800 -10.03932 -9.89195 -8.37344 -5.95572 1.02940 1.32152 1.44950 1.56168 1.67139 1.90607 2.18440 2.30855 2.91775 3.01466 3.07279 3.44149 3.55703 3.63241 3.69767 3.97073 4.06980 4.17649 4.33777 4.43952 4.49132 4.51727 4.57746 4.67777 4.84969 4.90413 4.91256 4.93122 4.97749 5.05290 5.10362 5.17755 5.21303 5.28728 5.33711 5.43000 5.46966 5.49846 5.62264 6.33183 6.61881 6.89648 7.04346 7.38917 7.78468 8.65753 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.016157 B = 0.007913 C = 0.006309 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1732.546768 B = 3537.446925 C = 4436.774578 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.110 4.110 3 C -0.131 4.131 4 C 0.381 3.619 5 O -0.456 6.456 6 C -0.149 4.149 7 C 0.477 3.523 8 O -0.622 6.622 9 N -0.442 5.442 10 C -0.325 4.325 11 H 0.111 0.889 12 C -0.002 4.002 13 N -0.899 5.899 14 Si 0.978 3.022 15 H -0.265 1.265 16 H -0.275 1.275 17 H -0.281 1.281 18 C 0.225 3.775 19 C 0.269 3.731 20 N -0.512 5.512 21 C -0.095 4.095 22 C -0.124 4.124 23 C -0.062 4.062 24 H 0.157 0.843 25 C -0.093 4.093 26 H 0.104 0.896 27 H 0.054 0.946 28 H 0.055 0.945 29 H 0.051 0.949 30 H 0.051 0.949 31 H 0.103 0.897 32 H 0.273 0.727 33 H 0.137 0.863 34 H 0.098 0.902 35 H 0.064 0.936 36 H 0.051 0.949 37 H 0.088 0.912 38 H 0.097 0.903 39 H 0.073 0.927 40 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.897 12.370 9.867 17.261 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.111 4.111 3 C -0.188 4.188 4 C 0.255 3.745 5 O -0.328 6.328 6 C -0.153 4.153 7 C 0.267 3.733 8 O -0.509 6.509 9 N -0.159 5.159 10 C -0.452 4.452 11 H 0.129 0.871 12 C -0.203 4.203 13 N -0.539 5.539 14 Si 0.803 3.197 15 H -0.189 1.189 16 H -0.200 1.200 17 H -0.207 1.207 18 C 0.098 3.902 19 C -0.048 4.048 20 N -0.193 5.193 21 C -0.133 4.133 22 C -0.161 4.161 23 C -0.080 4.080 24 H 0.175 0.825 25 C -0.131 4.131 26 H 0.123 0.877 27 H 0.073 0.927 28 H 0.074 0.926 29 H 0.071 0.929 30 H 0.070 0.930 31 H 0.122 0.878 32 H 0.083 0.917 33 H 0.154 0.846 34 H 0.115 0.885 35 H 0.083 0.917 36 H 0.070 0.930 37 H 0.107 0.893 38 H 0.116 0.884 39 H 0.092 0.908 40 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -6.148 10.891 9.875 15.936 hybrid contribution -0.419 -0.501 -1.442 1.583 sum -6.568 10.391 8.433 14.907 Atomic orbital electron populations 1.21866 0.90853 1.02189 1.04329 1.22277 0.98446 0.97071 0.93309 1.21739 1.00836 0.92304 1.03939 1.25845 0.75463 0.83421 0.89736 1.90392 1.52489 1.68089 1.21839 1.23522 0.96643 0.97846 0.97303 1.20026 0.88472 0.83037 0.81741 1.90517 1.18155 1.67090 1.75146 1.43749 1.07542 1.41582 1.23073 1.20117 0.83227 1.13711 1.28187 0.87131 1.25913 1.02839 0.93661 0.97922 1.69951 1.39439 1.08948 1.35584 0.85064 0.78010 0.78165 0.78471 1.18864 1.20017 1.20721 1.18800 0.93730 0.81542 0.96095 1.29634 0.89038 0.94673 0.91475 1.80830 1.13573 1.13615 1.11269 1.22405 0.96138 0.96893 0.97883 1.22923 1.01211 0.95339 0.96577 1.23766 0.91976 0.94977 0.97266 0.82516 1.23381 0.97770 0.99611 0.92375 0.87734 0.92677 0.92645 0.92941 0.92954 0.87836 0.91702 0.84560 0.88451 0.91731 0.92983 0.89292 0.88427 0.90841 0.90127 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.58 7.57 71.98 0.55 -2.03 16 2 C -0.11 -2.52 0.68 -51.43 -0.03 -2.55 16 3 C -0.13 -2.50 8.57 71.98 0.62 -1.88 16 4 C 0.38 13.46 4.51 30.50 0.14 13.60 16 5 O -0.46 -19.56 16.00 -1.45 -0.02 -19.58 16 6 C -0.15 -5.60 0.85 -50.37 -0.04 -5.64 16 7 C 0.48 22.79 6.94 87.65 0.61 23.40 16 8 O -0.62 -32.16 16.17 -3.08 -0.05 -32.21 16 9 N -0.44 -21.80 2.61 -645.41 -1.68 -23.48 16 10 C -0.33 -15.90 7.44 84.04 0.63 -15.28 16 11 H 0.11 5.30 3.51 -2.91 -0.01 5.29 16 12 C 0.00 -0.11 5.06 84.93 0.43 0.32 16 13 N -0.90 -45.45 9.11 21.66 0.20 -45.26 16 14 Si 0.98 39.65 29.58 68.60 2.03 41.68 16 15 H -0.26 -10.55 7.11 99.48 0.71 -9.84 16 16 H -0.27 -10.99 7.11 99.48 0.71 -10.28 16 17 H -0.28 -11.32 7.11 99.48 0.71 -10.61 16 18 C 0.22 10.65 5.10 84.58 0.43 11.08 16 19 C 0.27 13.63 13.84 89.44 1.24 14.87 16 20 N -0.51 -27.07 18.54 20.01 0.37 -26.70 16 21 C -0.10 -3.18 5.00 32.16 0.16 -3.02 16 22 C -0.12 -2.61 5.85 32.18 0.19 -2.43 16 23 C -0.06 -1.19 4.37 -7.32 -0.03 -1.22 16 24 H 0.16 1.69 8.14 -2.39 -0.02 1.67 16 25 C -0.09 -2.68 5.60 33.38 0.19 -2.50 16 26 H 0.10 1.22 8.14 -2.39 -0.02 1.20 16 27 H 0.05 1.12 8.12 -2.39 -0.02 1.10 16 28 H 0.05 1.18 6.35 -2.38 -0.02 1.17 16 29 H 0.05 1.09 7.25 -2.38 -0.02 1.07 16 30 H 0.05 1.10 8.14 -2.39 -0.02 1.08 16 31 H 0.10 1.21 8.14 -2.39 -0.02 1.20 16 32 H 0.27 13.32 8.31 -92.71 -0.77 12.55 16 33 H 0.14 6.44 6.07 -2.39 -0.01 6.43 16 34 H 0.10 4.29 7.55 -2.39 -0.02 4.27 16 35 H 0.06 2.36 6.26 -2.39 -0.01 2.35 16 36 H 0.05 1.94 8.14 -2.38 -0.02 1.92 16 37 H 0.09 1.58 8.14 -2.39 -0.02 1.56 16 38 H 0.10 1.72 5.54 -2.39 -0.01 1.71 16 39 H 0.07 2.12 7.28 -2.39 -0.02 2.11 16 40 H 0.08 2.33 8.14 -2.39 -0.02 2.31 16 Total: -1.00 -67.56 317.93 6.97 -60.59 By element: Atomic # 1 Polarization: 17.17 SS G_CDS: 1.07 Total: 18.24 kcal Atomic # 6 Polarization: 21.66 SS G_CDS: 5.06 Total: 26.72 kcal Atomic # 7 Polarization: -94.32 SS G_CDS: -1.11 Total: -95.43 kcal Atomic # 8 Polarization: -51.72 SS G_CDS: -0.07 Total: -51.79 kcal Atomic # 14 Polarization: 39.65 SS G_CDS: 2.03 Total: 41.68 kcal Total: -67.56 6.97 -60.59 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000001805568.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.053 kcal (2) G-P(sol) polarization free energy of solvation -67.560 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.507 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.975 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.585 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.532 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds