Wall clock time and date at job start Tue Mar 31 2020 02:49:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08993 * 109.47285 * 2 1 4 4 N 1.46500 * 109.46849 * 239.99927 * 2 1 3 5 5 C 1.34777 * 120.00009 * 85.00231 * 4 2 1 6 6 O 1.21558 * 119.99941 * 359.97438 * 5 4 2 7 7 C 1.47590 * 120.00131 * 179.97438 * 5 4 2 8 8 C 1.50708 * 119.99798 * 180.02562 * 7 5 4 9 9 C 1.52997 * 109.46852 * 268.12072 * 8 7 5 10 10 C 1.50705 * 109.46969 * 184.63773 * 9 8 7 11 11 H 1.08001 * 119.99725 * 359.97438 * 10 9 8 12 12 C 1.37872 * 120.00133 * 180.02562 * 10 9 8 13 13 N 1.31512 * 119.99867 * 359.97438 * 12 10 9 14 14 Si 1.86802 * 120.00151 * 179.97438 * 12 10 9 15 15 H 1.48507 * 109.46912 * 60.00019 * 14 12 10 16 16 H 1.48499 * 109.47183 * 179.97438 * 14 12 10 17 17 H 1.48498 * 109.47334 * 299.99981 * 14 12 10 18 18 N 1.29268 * 120.00260 * 359.97438 * 7 5 4 19 19 O 1.41600 * 119.99973 * 174.68827 * 18 7 5 20 20 C 1.50704 * 109.47011 * 120.00178 * 2 1 3 21 21 C 1.38237 * 119.99832 * 79.72464 * 20 2 1 22 22 C 1.38231 * 119.99711 * 179.80542 * 21 20 2 23 23 C 1.38234 * 120.00035 * 0.40385 * 22 21 20 24 24 C 1.38229 * 120.00222 * 359.85156 * 23 22 21 25 25 C 1.38228 * 119.99938 * 259.99624 * 20 2 1 26 26 H 1.09002 * 109.47052 * 180.02562 * 1 2 3 27 27 H 1.08999 * 109.46951 * 299.99648 * 1 2 3 28 28 H 1.08999 * 109.46856 * 59.99794 * 1 2 3 29 29 H 0.97003 * 120.00183 * 265.00214 * 4 2 1 30 30 H 1.08994 * 109.47003 * 28.12485 * 8 7 5 31 31 H 1.09003 * 109.46716 * 148.12489 * 8 7 5 32 32 H 1.09005 * 109.47412 * 304.63248 * 9 8 7 33 33 H 1.09001 * 109.47417 * 64.63750 * 9 8 7 34 34 H 0.97007 * 119.99670 * 179.97438 * 13 12 10 35 35 H 0.96696 * 113.99552 * 180.02562 * 19 18 7 36 36 H 1.07996 * 119.99975 * 359.97438 * 21 20 2 37 37 H 1.08007 * 119.99971 * 180.22909 * 22 21 20 38 38 H 1.08006 * 120.00017 * 179.83056 * 23 22 21 39 39 H 1.07997 * 120.00351 * 179.97438 * 24 23 22 40 40 H 1.08003 * 120.00091 * 359.97438 * 25 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0183 -0.6906 -1.1962 5 6 2.1471 -0.0183 -2.3572 6 8 1.8576 1.1611 -2.4118 7 6 2.6395 -0.7139 -3.5621 8 6 2.7840 0.0381 -4.8601 9 6 1.4945 -0.0949 -5.6728 10 6 1.6785 0.5599 -7.0176 11 1 2.6208 1.0247 -7.2675 12 6 0.6436 0.5663 -7.9286 13 7 -0.5039 0.0007 -7.6241 14 14 0.8714 1.3785 -9.5953 15 1 1.9843 0.7151 -10.3212 16 1 -0.3801 1.2493 -10.3841 17 1 1.1915 2.8162 -9.4058 18 7 2.9478 -1.9679 -3.5039 19 8 3.3124 -2.6628 -4.6826 20 6 2.0324 -0.7105 1.2305 21 6 2.0614 -2.0920 1.2674 22 6 2.5259 -2.7436 2.3945 23 6 2.9536 -2.0138 3.4879 24 6 2.9196 -0.6324 3.4529 25 6 2.4588 0.0193 2.3242 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 2.2490 -1.6318 -1.1527 30 1 2.9747 1.0907 -4.6509 31 1 3.6164 -0.3759 -5.4292 32 1 1.2597 -1.1503 -5.8116 33 1 0.6775 0.3921 -5.1403 34 1 -1.2322 0.0056 -8.2649 35 1 3.5252 -3.5951 -4.5395 36 1 1.7238 -2.6622 0.4147 37 1 2.5521 -3.8231 2.4220 38 1 3.3140 -2.5230 4.3696 39 1 3.2533 -0.0622 4.3073 40 1 2.4324 1.0987 2.2968 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000004012971.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:49:00 Heat of formation + Delta-G solvation = -12.438111 kcal Electronic energy + Delta-G solvation = -22270.253235 eV Core-core repulsion = 18858.443485 eV Total energy + Delta-G solvation = -3411.809750 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.29389 -39.14512 -36.90123 -35.63434 -34.08665 -32.84352 -31.72437 -31.12715 -29.91471 -29.19990 -25.58273 -24.62753 -23.34722 -22.78087 -21.31874 -20.49091 -19.58345 -17.62692 -17.06828 -16.55527 -16.08517 -16.01885 -15.42399 -15.00474 -14.71903 -14.44502 -14.34882 -13.75110 -13.68335 -13.63635 -13.37584 -13.04917 -12.70660 -12.43551 -12.29422 -12.19628 -11.77932 -11.33314 -11.29830 -11.01557 -10.87824 -10.71785 -10.31541 -10.03887 -9.82557 -9.64152 -9.24988 -9.19477 -9.11311 -8.99314 -8.85515 -8.29672 -5.94915 -3.97196 1.03187 1.12067 1.45369 2.86933 3.32937 3.38116 3.41355 3.43236 3.47133 3.56260 4.34438 4.50549 4.59993 4.71891 4.84455 4.99589 5.11608 5.15874 5.25387 5.31829 5.41084 5.56917 5.69268 5.72208 5.73716 5.83315 6.12546 6.18090 6.21948 6.23445 6.27874 6.47492 6.57542 6.69990 6.82296 7.02623 7.42918 7.68633 7.78520 7.86450 8.03291 8.22681 8.43892 9.07754 9.65752 11.16610 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.029145 B = 0.003129 C = 0.002984 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 960.476994 B = 8946.228333 C = 9379.918551 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.181 3.819 3 H 0.100 0.900 4 N -0.715 5.715 5 C 0.581 3.419 6 O -0.506 6.506 7 C 0.118 3.882 8 C -0.095 4.095 9 C 0.038 3.962 10 C -0.517 4.517 11 H 0.056 0.944 12 C 0.057 3.943 13 N -0.895 5.895 14 Si 0.894 3.106 15 H -0.277 1.277 16 H -0.287 1.287 17 H -0.276 1.276 18 N -0.323 5.323 19 O -0.380 6.380 20 C -0.088 4.088 21 C -0.113 4.113 22 C -0.116 4.116 23 C -0.122 4.122 24 C -0.118 4.118 25 C -0.107 4.107 26 H 0.060 0.940 27 H 0.067 0.933 28 H 0.072 0.928 29 H 0.407 0.593 30 H 0.077 0.923 31 H 0.076 0.924 32 H 0.019 0.981 33 H 0.020 0.980 34 H 0.261 0.739 35 H 0.395 0.605 36 H 0.123 0.877 37 H 0.123 0.877 38 H 0.121 0.879 39 H 0.123 0.877 40 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.108 -5.964 22.760 24.308 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.077 3.923 3 H 0.118 0.882 4 N -0.370 5.370 5 C 0.365 3.635 6 O -0.377 6.377 7 C -0.075 4.075 8 C -0.134 4.134 9 C 0.000 4.000 10 C -0.556 4.556 11 H 0.074 0.926 12 C -0.144 4.144 13 N -0.535 5.535 14 Si 0.722 3.278 15 H -0.202 1.202 16 H -0.213 1.213 17 H -0.202 1.202 18 N -0.068 5.068 19 O -0.289 6.289 20 C -0.089 4.089 21 C -0.131 4.131 22 C -0.134 4.134 23 C -0.140 4.140 24 C -0.136 4.136 25 C -0.126 4.126 26 H 0.079 0.921 27 H 0.086 0.914 28 H 0.091 0.909 29 H 0.243 0.757 30 H 0.096 0.904 31 H 0.094 0.906 32 H 0.037 0.963 33 H 0.038 0.962 34 H 0.070 0.930 35 H 0.242 0.758 36 H 0.141 0.859 37 H 0.141 0.859 38 H 0.139 0.861 39 H 0.141 0.859 40 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 5.706 -5.287 22.974 24.255 hybrid contribution 0.284 -0.310 -1.410 1.472 sum 5.990 -5.597 21.564 23.069 Atomic orbital electron populations 1.22194 0.93734 1.02753 1.03188 1.19851 0.94608 0.96800 0.81058 0.88214 1.46108 1.67347 1.14601 1.08897 1.17636 0.77857 0.86236 0.81750 1.90834 1.48404 1.14704 1.83740 1.25122 0.93190 0.92011 0.97174 1.21189 1.03107 0.99438 0.89694 1.18966 0.89852 0.97494 0.93715 1.21127 0.98873 1.36214 0.99341 0.92574 1.25003 0.95204 0.95553 0.98618 1.69966 1.03326 1.44468 1.35708 0.86620 0.77304 0.80021 0.83833 1.20247 1.21301 1.20152 1.76038 1.10696 1.09350 1.10765 1.88729 1.88326 1.27316 1.24503 1.19961 0.99428 0.94004 0.95479 1.20992 0.99765 0.93834 0.98498 1.21145 0.98836 1.00016 0.93411 1.21183 1.00019 0.94268 0.98541 1.21144 0.99717 0.94656 0.98071 1.21032 0.98481 1.00086 0.92986 0.92134 0.91371 0.90932 0.75665 0.90421 0.90574 0.96299 0.96177 0.92966 0.75802 0.85931 0.85880 0.86099 0.85905 0.85643 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.82 9.46 37.16 0.35 -1.47 16 2 C 0.18 2.12 2.78 -69.08 -0.19 1.93 16 3 H 0.10 1.24 7.44 -51.93 -0.39 0.86 16 4 N -0.71 -9.74 5.01 -55.96 -0.28 -10.02 16 5 C 0.58 10.37 7.77 -12.44 -0.10 10.28 16 6 O -0.51 -10.41 16.00 5.31 0.09 -10.33 16 7 C 0.12 2.29 6.39 -79.85 -0.51 1.78 16 8 C -0.09 -2.14 4.78 -27.88 -0.13 -2.28 16 9 C 0.04 1.05 4.95 -27.88 -0.14 0.91 16 10 C -0.52 -15.26 9.11 -34.44 -0.31 -15.58 16 11 H 0.06 1.60 7.74 -52.49 -0.41 1.19 16 12 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 13 N -0.90 -27.75 13.29 55.43 0.74 -27.02 16 14 Si 0.89 22.30 29.54 -169.99 -5.02 17.27 16 15 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 16 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 17 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 18 N -0.32 -5.55 11.35 35.07 0.40 -5.16 16 19 O -0.38 -6.42 13.83 -11.47 -0.16 -6.58 16 20 C -0.09 -0.88 4.95 -104.62 -0.52 -1.40 16 21 C -0.11 -1.04 9.05 -39.58 -0.36 -1.40 16 22 C -0.12 -0.94 10.05 -39.59 -0.40 -1.34 16 23 C -0.12 -0.93 10.05 -39.59 -0.40 -1.33 16 24 C -0.12 -0.93 10.05 -39.58 -0.40 -1.32 16 25 C -0.11 -0.96 9.67 -39.58 -0.38 -1.34 16 26 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 27 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 28 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 29 H 0.41 4.91 6.22 -40.82 -0.25 4.66 16 30 H 0.08 1.75 7.66 -51.93 -0.40 1.36 16 31 H 0.08 1.71 7.52 -51.93 -0.39 1.32 16 32 H 0.02 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.02 0.59 8.14 -51.93 -0.42 0.17 16 34 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 35 H 0.40 4.23 9.28 45.56 0.42 4.65 16 36 H 0.12 1.04 6.93 -52.49 -0.36 0.68 16 37 H 0.12 0.76 8.06 -52.48 -0.42 0.34 16 38 H 0.12 0.67 8.06 -52.48 -0.42 0.24 16 39 H 0.12 0.71 8.06 -52.49 -0.42 0.28 16 40 H 0.13 0.95 8.04 -52.48 -0.42 0.53 16 LS Contribution 348.87 15.07 5.26 5.26 Total: -1.00 -34.91 348.87 -7.28 -42.19 By element: Atomic # 1 Polarization: 10.04 SS G_CDS: -4.71 Total: 5.33 kcal Atomic # 6 Polarization: -7.37 SS G_CDS: -3.58 Total: -10.95 kcal Atomic # 7 Polarization: -43.04 SS G_CDS: 0.85 Total: -42.19 kcal Atomic # 8 Polarization: -16.83 SS G_CDS: -0.07 Total: -16.91 kcal Atomic # 14 Polarization: 22.30 SS G_CDS: -5.02 Total: 17.27 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -34.91 -7.28 -42.19 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000004012971.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.754 kcal (2) G-P(sol) polarization free energy of solvation -34.912 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.158 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.280 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.192 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.438 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds