Wall clock time and date at job start Tue Mar 31 2020 02:36:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52996 * 109.47324 * 2 1 4 4 C 1.53002 * 109.47259 * 239.99505 * 2 1 3 5 5 C 1.50700 * 109.47137 * 119.99674 * 2 1 3 6 6 C 1.38360 * 119.85285 * 60.00241 * 5 2 1 7 7 C 1.37957 * 120.14717 * 180.29865 * 6 5 2 8 8 C 1.39581 * 119.84882 * 359.47380 * 7 6 5 9 9 C 1.47847 * 120.14329 * 180.23433 * 8 7 6 10 10 O 1.21550 * 119.99870 * 180.29116 * 9 8 7 11 11 N 1.34778 * 120.00025 * 0.28624 * 9 8 7 12 12 N 1.40098 * 120.00174 * 180.02562 * 11 9 8 13 13 C 1.34778 * 120.00182 * 180.02562 * 12 11 9 14 14 O 1.21690 * 119.99702 * 359.97438 * 13 12 11 15 15 C 1.46369 * 119.99845 * 180.02562 * 13 12 11 16 16 H 1.08000 * 120.00546 * 353.93229 * 15 13 12 17 17 C 1.40055 * 119.99764 * 173.93579 * 15 13 12 18 18 N 1.30664 * 120.00063 * 6.15120 * 17 15 13 19 19 Si 1.86800 * 119.99899 * 186.14808 * 17 15 13 20 20 H 1.48494 * 109.47044 * 94.98586 * 19 17 15 21 21 H 1.48499 * 109.47066 * 214.98584 * 19 17 15 22 22 H 1.48502 * 109.47312 * 334.98407 * 19 17 15 23 23 C 1.39570 * 119.71107 * 0.51902 * 8 7 6 24 24 C 1.37958 * 119.85609 * 359.73443 * 23 8 7 25 25 H 1.09002 * 109.47101 * 300.00458 * 1 2 3 26 26 H 1.08998 * 109.46599 * 60.00162 * 1 2 3 27 27 H 1.08996 * 109.47084 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.47314 * 180.02562 * 3 2 1 29 29 H 1.09003 * 109.46697 * 300.00055 * 3 2 1 30 30 H 1.09002 * 109.47406 * 59.99728 * 3 2 1 31 31 H 1.08996 * 109.47440 * 300.00232 * 4 2 1 32 32 H 1.08998 * 109.46585 * 60.00330 * 4 2 1 33 33 H 1.09002 * 109.47267 * 180.02562 * 4 2 1 34 34 H 1.08005 * 119.92647 * 0.02562 * 6 5 2 35 35 H 1.07994 * 120.07678 * 179.71816 * 7 6 5 36 36 H 0.97008 * 120.00193 * 0.02562 * 11 9 8 37 37 H 0.96998 * 119.99656 * 359.97438 * 12 11 9 38 38 H 0.96996 * 120.00383 * 179.97438 * 18 17 15 39 39 H 1.08005 * 120.07199 * 179.70505 * 23 8 7 40 40 H 1.07999 * 119.92927 * 179.97438 * 24 23 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7214 -1.2492 5 6 2.0323 -0.7103 1.2305 6 6 1.6963 -2.0350 1.4465 7 6 2.1477 -2.6894 2.5740 8 6 2.9542 -2.0153 3.4923 9 6 3.4459 -2.7118 4.7002 10 8 4.1438 -2.1207 5.5009 11 7 3.1203 -4.0021 4.9136 12 7 3.5857 -4.6620 6.0584 13 6 3.2605 -5.9525 6.2715 14 8 2.5622 -6.5443 5.4697 15 6 3.7464 -6.6417 7.4679 16 1 4.4438 -6.1491 8.1292 17 6 3.3068 -7.9401 7.7551 18 7 2.5593 -8.5817 6.8967 19 14 3.7893 -8.7547 9.3654 20 1 2.7119 -8.5491 10.3664 21 1 3.9883 -10.2095 9.1440 22 1 5.0514 -8.1530 9.8659 23 6 3.2896 -0.6791 3.2684 24 6 2.8272 -0.0349 2.1395 25 1 -0.3633 0.5139 0.8900 26 1 -0.3632 0.5138 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 3.1300 1.4424 -0.0005 29 1 1.6767 1.9562 -0.8900 30 1 1.6767 1.9564 0.8900 31 1 1.6767 -1.7490 -1.2492 32 1 1.6767 -0.2075 -2.1391 33 1 3.1301 -0.7218 -1.2490 34 1 1.0755 -2.5566 0.7330 35 1 1.8809 -3.7220 2.7437 36 1 2.5636 -4.4740 4.2744 37 1 4.1427 -4.1903 6.6973 38 1 2.2551 -9.4810 7.0954 39 1 3.9094 -0.1505 3.9775 40 1 3.0857 0.9991 1.9652 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000005379936.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:36:10 Heat of formation + Delta-G solvation = -33.589883 kcal Electronic energy + Delta-G solvation = -22102.046665 eV Core-core repulsion = 18689.319705 eV Total energy + Delta-G solvation = -3412.726960 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.29948 -39.00789 -37.20637 -36.15424 -34.18500 -32.58051 -31.43001 -30.85102 -29.31125 -27.62470 -27.52173 -26.22295 -23.96101 -22.33476 -20.92376 -20.51490 -19.36703 -18.27123 -16.87954 -16.49600 -15.89969 -15.26411 -15.21142 -14.74099 -14.73025 -14.47885 -14.14283 -13.94848 -13.64488 -13.53087 -12.98201 -12.75061 -12.68508 -12.56540 -12.16620 -12.14677 -11.95753 -11.56680 -11.40567 -11.22556 -11.15250 -10.97287 -10.69096 -10.65208 -10.37283 -10.11408 -9.68681 -9.03070 -8.97272 -8.79825 -7.96799 -7.14289 -6.39321 -4.82656 0.87256 1.33685 2.87526 3.03146 3.09251 3.16377 3.21791 3.92154 4.05033 4.28693 4.41341 4.45975 4.70850 4.74715 4.86458 4.94369 5.00145 5.25729 5.29926 5.34062 5.45839 5.47779 5.58124 5.59209 5.59486 5.62391 5.70317 5.76145 5.85216 5.93139 5.97762 6.01894 6.30047 6.37550 6.47463 6.82985 7.29077 7.31746 7.81901 7.92877 8.17773 8.79918 8.85652 9.21142 10.36406 10.54411 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.037406 B = 0.002812 C = 0.002664 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 748.372786 B = 9954.009399 C =10506.645227 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.032 4.032 3 C -0.145 4.145 4 C -0.139 4.139 5 C -0.053 4.053 6 C -0.122 4.122 7 C -0.085 4.085 8 C -0.120 4.120 9 C 0.540 3.460 10 O -0.559 6.559 11 N -0.503 5.503 12 N -0.560 5.560 13 C 0.554 3.446 14 O -0.582 6.582 15 C -0.531 4.531 16 H 0.076 0.924 17 C 0.088 3.912 18 N -0.763 5.763 19 Si 0.918 3.082 20 H -0.271 1.271 21 H -0.278 1.278 22 H -0.262 1.262 23 C -0.058 4.058 24 C -0.131 4.131 25 H 0.057 0.943 26 H 0.058 0.942 27 H 0.059 0.941 28 H 0.060 0.940 29 H 0.057 0.943 30 H 0.060 0.940 31 H 0.059 0.941 32 H 0.058 0.942 33 H 0.057 0.943 34 H 0.127 0.873 35 H 0.129 0.871 36 H 0.423 0.577 37 H 0.414 0.586 38 H 0.272 0.728 39 H 0.136 0.864 40 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.748 16.102 -13.747 21.350 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.032 4.032 3 C -0.202 4.202 4 C -0.197 4.197 5 C -0.053 4.053 6 C -0.140 4.140 7 C -0.104 4.104 8 C -0.125 4.125 9 C 0.326 3.674 10 O -0.439 6.439 11 N -0.245 5.245 12 N -0.313 5.313 13 C 0.360 3.640 14 O -0.463 6.463 15 C -0.570 4.570 16 H 0.095 0.905 17 C -0.133 4.133 18 N -0.391 5.391 19 Si 0.742 3.258 20 H -0.196 1.196 21 H -0.203 1.203 22 H -0.186 1.186 23 C -0.077 4.077 24 C -0.149 4.149 25 H 0.076 0.924 26 H 0.077 0.923 27 H 0.078 0.922 28 H 0.079 0.921 29 H 0.076 0.924 30 H 0.079 0.921 31 H 0.078 0.922 32 H 0.077 0.923 33 H 0.076 0.924 34 H 0.145 0.855 35 H 0.147 0.853 36 H 0.265 0.735 37 H 0.253 0.747 38 H 0.083 0.917 39 H 0.154 0.846 40 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -2.888 15.841 -13.816 21.217 hybrid contribution 0.173 -0.494 0.764 0.927 sum -2.714 15.347 -13.052 20.328 Atomic orbital electron populations 1.21900 0.93476 1.02321 1.01953 1.19554 0.95876 0.95119 0.92683 1.21977 1.01323 0.94891 1.02021 1.21900 1.01388 1.00354 0.96008 1.20001 0.96100 0.93873 0.95348 1.20891 1.01087 0.94327 0.97661 1.21408 0.95558 0.99882 0.93526 1.19847 1.01639 0.95351 0.95622 1.18209 0.82010 0.80752 0.86452 1.90726 1.39910 1.66088 1.47186 1.44614 1.50890 1.09609 1.19357 1.45908 1.57723 1.11615 1.16097 1.18653 0.80920 0.76898 0.87536 1.90607 1.42620 1.64998 1.48078 1.20691 1.29283 0.99543 1.07442 0.90547 1.25722 0.93387 0.96557 0.97684 1.70007 1.25254 1.10849 1.32971 0.86185 0.79746 0.78425 0.81476 1.19590 1.20286 1.18610 1.21238 0.97013 0.92856 0.96598 1.21132 0.99035 1.00452 0.94272 0.92363 0.92300 0.92213 0.92120 0.92351 0.92119 0.92216 0.92302 0.92359 0.85543 0.85317 0.73519 0.74660 0.91725 0.84643 0.85077 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.00 8.29 37.16 0.31 -0.69 16 2 C -0.03 -0.25 0.85 -155.66 -0.13 -0.38 16 3 C -0.15 -0.97 7.13 37.16 0.26 -0.70 16 4 C -0.14 -1.00 8.29 37.16 0.31 -0.69 16 5 C -0.05 -0.54 4.77 -104.53 -0.50 -1.04 16 6 C -0.12 -1.34 8.69 -39.64 -0.34 -1.69 16 7 C -0.08 -1.12 9.54 -39.18 -0.37 -1.50 16 8 C -0.12 -1.84 5.87 -104.97 -0.62 -2.46 16 9 C 0.54 10.38 7.89 -12.33 -0.10 10.28 16 10 O -0.56 -12.12 16.19 5.32 0.09 -12.03 16 11 N -0.50 -10.51 6.21 30.53 0.19 -10.32 16 12 N -0.56 -13.40 6.26 30.19 0.19 -13.22 16 13 C 0.55 15.55 7.86 -12.99 -0.10 15.45 16 14 O -0.58 -17.99 14.88 5.20 0.08 -17.91 16 15 C -0.53 -14.66 9.54 -35.63 -0.34 -15.00 16 16 H 0.08 1.93 7.85 -52.49 -0.41 1.52 16 17 C 0.09 2.36 5.49 -17.37 -0.10 2.27 16 18 N -0.76 -22.02 11.85 55.55 0.66 -21.36 16 19 Si 0.92 19.57 29.56 -169.99 -5.03 14.55 16 20 H -0.27 -5.66 7.11 56.52 0.40 -5.26 16 21 H -0.28 -5.78 7.11 56.52 0.40 -5.38 16 22 H -0.26 -5.42 7.11 56.52 0.40 -5.02 16 23 C -0.06 -0.77 9.60 -39.19 -0.38 -1.15 16 24 C -0.13 -1.41 8.96 -39.64 -0.36 -1.77 16 25 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 26 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 27 H 0.06 0.43 7.37 -51.93 -0.38 0.05 16 28 H 0.06 0.40 7.51 -51.93 -0.39 0.01 16 29 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 30 H 0.06 0.40 7.50 -51.93 -0.39 0.01 16 31 H 0.06 0.43 7.37 -51.93 -0.38 0.05 16 32 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 33 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 34 H 0.13 1.15 7.08 -52.48 -0.37 0.77 16 35 H 0.13 1.65 6.41 -52.49 -0.34 1.31 16 36 H 0.42 8.41 6.03 -182.59 -1.10 7.31 16 37 H 0.41 9.41 7.98 -182.60 -1.46 7.95 16 38 H 0.27 7.08 8.29 -40.82 -0.34 6.74 16 39 H 0.14 1.80 7.65 -52.48 -0.40 1.40 16 40 H 0.13 1.11 5.87 -52.49 -0.31 0.81 16 LS Contribution 336.66 15.07 5.07 5.07 Total: -1.00 -33.82 336.66 -8.38 -42.20 By element: Atomic # 1 Polarization: 19.27 SS G_CDS: -7.18 Total: 12.08 kcal Atomic # 6 Polarization: 3.38 SS G_CDS: -2.45 Total: 0.93 kcal Atomic # 7 Polarization: -45.93 SS G_CDS: 1.04 Total: -44.89 kcal Atomic # 8 Polarization: -30.11 SS G_CDS: 0.16 Total: -29.94 kcal Atomic # 14 Polarization: 19.57 SS G_CDS: -5.03 Total: 14.55 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -33.82 -8.38 -42.20 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000005379936.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.612 kcal (2) G-P(sol) polarization free energy of solvation -33.818 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.206 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.384 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.202 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.590 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds