Wall clock time and date at job start Tue Mar 31 2020 02:51:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08995 * 109.46828 * 2 1 4 4 N 1.46497 * 109.47062 * 240.00014 * 2 1 3 5 5 C 1.34777 * 120.00324 * 85.00133 * 4 2 1 6 6 O 1.21550 * 119.99455 * 0.02562 * 5 4 2 7 7 C 1.47886 * 119.99906 * 179.97438 * 5 4 2 8 8 C 1.39912 * 120.02824 * 359.72606 * 7 5 4 9 9 C 1.38333 * 120.35890 * 179.71522 * 8 7 5 10 10 C 1.37745 * 120.41150 * 0.55889 * 9 8 7 11 11 C 1.40752 * 120.03927 * 359.72084 * 10 9 8 12 12 C 1.41436 * 120.17891 * 180.02562 * 11 10 9 13 13 H 1.08003 * 119.99599 * 24.44497 * 12 11 10 14 14 C 1.39938 * 120.00145 * 204.43625 * 12 11 10 15 15 N 1.30825 * 120.00160 * 17.88755 * 14 12 11 16 16 Si 1.86806 * 119.99840 * 197.88480 * 14 12 11 17 17 H 1.48492 * 109.47191 * 90.00538 * 16 14 12 18 18 H 1.48507 * 109.46717 * 210.00322 * 16 14 12 19 19 H 1.48498 * 109.47061 * 329.99842 * 16 14 12 20 20 C 1.38998 * 120.01939 * 180.02562 * 7 5 4 21 21 C 1.50696 * 109.46685 * 119.99878 * 2 1 3 22 22 O 1.21283 * 119.99830 * 120.00420 * 21 2 1 23 23 N 1.34776 * 120.00319 * 299.72066 * 21 2 1 24 24 C 1.46497 * 120.00176 * 180.02562 * 23 21 2 25 25 C 1.46500 * 119.99773 * 0.02562 * 23 21 2 26 26 H 1.09003 * 109.47120 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.47122 * 300.00009 * 1 2 3 28 28 H 1.08998 * 109.47014 * 60.00585 * 1 2 3 29 29 H 0.97005 * 119.99555 * 264.99894 * 4 2 1 30 30 H 1.08001 * 119.82054 * 359.97438 * 8 7 5 31 31 H 1.08002 * 119.79110 * 180.25964 * 9 8 7 32 32 H 1.07999 * 119.97995 * 179.74112 * 10 9 8 33 33 H 0.96995 * 120.00344 * 179.97438 * 15 14 12 34 34 H 1.07999 * 120.20701 * 359.97438 * 20 7 5 35 35 H 1.08993 * 109.47422 * 0.02562 * 24 23 21 36 36 H 1.09004 * 109.47233 * 120.00853 * 24 23 21 37 37 H 1.09005 * 109.47368 * 239.99975 * 24 23 21 38 38 H 1.09004 * 109.47151 * 89.99990 * 25 23 21 39 39 H 1.09004 * 109.47219 * 209.99157 * 25 23 21 40 40 H 1.08995 * 109.47366 * 329.99847 * 25 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0183 -0.6906 -1.1961 5 6 2.1471 -0.0183 -2.3571 6 8 1.8585 1.1612 -2.4116 7 6 2.6406 -0.7154 -3.5644 8 6 2.9794 -2.0714 -3.5007 9 6 3.4361 -2.7316 -4.6272 10 6 3.5736 -2.0595 -5.8216 11 6 3.2432 -0.6938 -5.9037 12 6 3.3827 -0.0009 -7.1288 13 1 3.3524 -0.5432 -8.0623 14 6 3.5597 1.3873 -7.1313 15 7 3.9433 1.9998 -6.0408 16 14 3.2483 2.3656 -8.6919 17 1 1.8278 2.7963 -8.7310 18 1 4.1288 3.5614 -8.7104 19 1 3.5411 1.5171 -9.8748 20 6 2.7741 -0.0223 -4.7619 21 6 2.0322 -0.7104 1.2305 22 8 2.7296 -1.6965 1.1192 23 7 1.7113 -0.2467 2.4546 24 6 2.2000 -0.9369 3.6507 25 6 0.8737 0.9477 2.5889 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5137 -0.8900 29 1 2.2490 -1.6318 -1.1525 30 1 2.8799 -2.6065 -2.5679 31 1 3.6911 -3.7795 -4.5686 32 1 3.9347 -2.5808 -6.6958 33 1 4.0664 2.9619 -6.0427 34 1 2.5179 1.0255 -4.8147 35 1 2.8021 -1.7957 3.3542 36 1 2.8093 -0.2530 4.2415 37 1 1.3524 -1.2754 4.2467 38 1 -0.1753 0.6537 2.6253 39 1 1.1355 1.4737 3.5071 40 1 1.0375 1.6044 1.7346 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000054793128.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:51:55 Heat of formation + Delta-G solvation = -66.818447 kcal Electronic energy + Delta-G solvation = -22742.627574 eV Core-core repulsion = 19328.459715 eV Total energy + Delta-G solvation = -3414.167858 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.68282 -40.49415 -38.83177 -36.78730 -36.15176 -35.58776 -32.82521 -31.38437 -31.11487 -28.68763 -27.59591 -27.21148 -25.36395 -23.57394 -22.80755 -21.28927 -20.65663 -19.62615 -18.34283 -18.00075 -17.20759 -17.07784 -16.80172 -16.47895 -16.14156 -15.99831 -15.35965 -15.09878 -14.82272 -14.58486 -14.37489 -14.28339 -13.80506 -13.65402 -13.45386 -13.35128 -13.07628 -13.02156 -12.85986 -12.78144 -12.54948 -12.42443 -12.17709 -11.89591 -11.51940 -11.08164 -11.04910 -10.84014 -10.29689 -9.77116 -9.50560 -9.40714 -8.66563 -6.38384 0.34165 0.99523 1.34934 1.37686 1.48705 1.52326 1.67941 2.06462 2.20160 2.31334 2.77251 3.26539 3.68136 3.86082 3.99292 4.07013 4.21401 4.40081 4.41589 4.48771 4.55256 4.58956 4.69690 4.76615 4.87747 4.89664 4.93246 5.08044 5.14494 5.16846 5.28023 5.31962 5.42146 5.50568 5.84121 5.91229 6.03795 6.13439 6.26275 6.44270 6.61808 6.87311 6.90976 6.93103 7.20654 8.30519 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.025298 B = 0.003668 C = 0.003340 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1106.555650 B = 7632.522493 C = 8381.555928 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.123 3.877 3 H 0.106 0.894 4 N -0.706 5.706 5 C 0.568 3.432 6 O -0.578 6.578 7 C -0.139 4.139 8 C -0.203 4.203 9 C -0.095 4.095 10 C -0.216 4.216 11 C 0.068 3.932 12 C -0.496 4.496 13 H 0.085 0.915 14 C 0.030 3.970 15 N -0.824 5.824 16 Si 0.985 3.015 17 H -0.265 1.265 18 H -0.269 1.269 19 H -0.251 1.251 20 C -0.126 4.126 21 C 0.511 3.489 22 O -0.572 6.572 23 N -0.611 5.611 24 C 0.076 3.924 25 C 0.060 3.940 26 H 0.066 0.934 27 H 0.114 0.886 28 H 0.057 0.943 29 H 0.412 0.588 30 H 0.124 0.876 31 H 0.136 0.864 32 H 0.110 0.890 33 H 0.288 0.712 34 H 0.104 0.896 35 H 0.064 0.936 36 H 0.080 0.920 37 H 0.086 0.914 38 H 0.086 0.914 39 H 0.101 0.899 40 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.178 -1.704 17.136 18.657 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.015 3.985 3 H 0.124 0.876 4 N -0.361 5.361 5 C 0.359 3.641 6 O -0.459 6.459 7 C -0.142 4.142 8 C -0.223 4.223 9 C -0.113 4.113 10 C -0.236 4.236 11 C 0.066 3.934 12 C -0.525 4.525 13 H 0.103 0.897 14 C -0.185 4.185 15 N -0.449 5.449 16 Si 0.806 3.194 17 H -0.189 1.189 18 H -0.194 1.194 19 H -0.175 1.175 20 C -0.147 4.147 21 C 0.298 3.702 22 O -0.452 6.452 23 N -0.344 5.344 24 C -0.066 4.066 25 C -0.081 4.081 26 H 0.085 0.915 27 H 0.132 0.868 28 H 0.076 0.924 29 H 0.250 0.750 30 H 0.142 0.858 31 H 0.154 0.846 32 H 0.129 0.871 33 H 0.098 0.902 34 H 0.122 0.878 35 H 0.083 0.917 36 H 0.099 0.901 37 H 0.105 0.895 38 H 0.104 0.896 39 H 0.119 0.881 40 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -6.945 -1.158 17.213 18.597 hybrid contribution 0.307 0.213 -0.700 0.793 sum -6.638 -0.945 16.514 17.823 Atomic orbital electron populations 1.22355 0.90918 1.03759 1.04896 1.20860 0.97329 0.97459 0.82894 0.87621 1.45634 1.67580 1.14850 1.08000 1.18633 0.76019 0.85793 0.83693 1.90653 1.52290 1.17139 1.85800 1.19725 1.05990 0.95396 0.93121 1.20810 1.09602 0.92807 0.99040 1.20889 0.98632 0.99506 0.92282 1.21406 1.08600 0.95332 0.98272 1.17955 0.89501 0.92635 0.93333 1.19874 1.45745 0.92974 0.93885 0.89694 1.26879 0.91228 0.99143 1.01298 1.69888 1.31998 1.11886 1.31161 0.85154 0.79123 0.77560 0.77587 1.18940 1.19377 1.17483 1.21448 1.01222 0.99627 0.92372 1.20668 0.79685 0.84144 0.85666 1.90675 1.39575 1.28186 1.86733 1.47737 1.51547 1.29952 1.05178 1.21874 1.00874 0.98161 0.85690 1.22358 0.95260 0.85681 1.04786 0.91533 0.86802 0.92415 0.74970 0.85775 0.84639 0.87150 0.90191 0.87792 0.91709 0.90125 0.89547 0.89604 0.88087 0.90675 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.57 9.12 71.98 0.66 -2.92 16 2 C 0.12 3.48 2.18 44.25 0.10 3.58 16 3 H 0.11 3.15 6.82 -2.39 -0.02 3.13 16 4 N -0.71 -25.48 4.90 -448.95 -2.20 -27.68 16 5 C 0.57 25.97 7.74 86.80 0.67 26.64 16 6 O -0.58 -29.49 16.00 -3.87 -0.06 -29.55 16 7 C -0.14 -6.91 5.87 -20.13 -0.12 -7.03 16 8 C -0.20 -8.76 9.55 22.70 0.22 -8.55 16 9 C -0.10 -4.04 10.01 22.18 0.22 -3.82 16 10 C -0.22 -10.46 9.78 22.77 0.22 -10.24 16 11 C 0.07 3.77 5.57 -21.32 -0.12 3.65 16 12 C -0.50 -27.22 9.05 23.47 0.21 -27.01 16 13 H 0.08 4.40 7.91 -2.91 -0.02 4.37 16 14 C 0.03 1.56 5.14 85.25 0.44 1.99 16 15 N -0.82 -46.06 10.96 21.82 0.24 -45.82 16 16 Si 0.99 39.62 29.60 68.60 2.03 41.65 16 17 H -0.26 -10.44 7.11 99.48 0.71 -9.73 16 18 H -0.27 -10.33 7.11 99.48 0.71 -9.63 16 19 H -0.25 -9.57 7.11 99.48 0.71 -8.86 16 20 C -0.13 -7.14 8.24 23.01 0.19 -6.95 16 21 C 0.51 13.57 7.14 87.66 0.63 14.19 16 22 O -0.57 -19.28 15.17 -3.04 -0.05 -19.32 16 23 N -0.61 -10.84 3.27 -871.90 -2.85 -13.70 16 24 C 0.08 1.05 10.68 127.77 1.37 2.41 16 25 C 0.06 0.60 8.85 127.77 1.13 1.73 16 26 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 27 H 0.11 1.60 4.56 -2.39 -0.01 1.59 16 28 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 29 H 0.41 14.25 5.81 -92.70 -0.54 13.71 16 30 H 0.12 4.52 6.38 -2.91 -0.02 4.50 16 31 H 0.14 4.61 8.06 -2.91 -0.02 4.58 16 32 H 0.11 4.90 8.06 -2.91 -0.02 4.87 16 33 H 0.29 14.74 8.30 -92.71 -0.77 13.97 16 34 H 0.10 6.45 5.74 -2.91 -0.02 6.43 16 35 H 0.06 1.24 6.90 -2.39 -0.02 1.22 16 36 H 0.08 0.81 8.14 -2.38 -0.02 0.79 16 37 H 0.09 0.77 8.14 -2.38 -0.02 0.75 16 38 H 0.09 0.54 6.96 -2.39 -0.02 0.52 16 39 H 0.10 0.52 8.07 -2.38 -0.02 0.50 16 40 H 0.07 0.86 6.01 -2.39 -0.01 0.85 16 Total: -1.00 -73.69 332.26 3.45 -70.24 By element: Atomic # 1 Polarization: 35.97 SS G_CDS: 0.54 Total: 36.51 kcal Atomic # 6 Polarization: -18.12 SS G_CDS: 5.81 Total: -12.31 kcal Atomic # 7 Polarization: -82.38 SS G_CDS: -4.82 Total: -87.20 kcal Atomic # 8 Polarization: -48.77 SS G_CDS: -0.11 Total: -48.88 kcal Atomic # 14 Polarization: 39.62 SS G_CDS: 2.03 Total: 41.65 kcal Total: -73.69 3.45 -70.24 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000054793128.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.419 kcal (2) G-P(sol) polarization free energy of solvation -73.691 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.272 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.454 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.237 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.818 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds