Wall clock time and date at job start Tue Mar 31 2020 02:58:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46496 * 120.00052 * 2 1 4 4 C 1.50698 * 109.47323 * 270.00437 * 3 2 1 5 5 H 1.07996 * 120.00324 * 359.97438 * 4 3 2 6 6 C 1.37883 * 119.99790 * 179.97438 * 4 3 2 7 7 N 1.31512 * 119.99824 * 179.97438 * 6 4 3 8 8 Si 1.86799 * 120.00122 * 359.97438 * 6 4 3 9 9 H 1.48503 * 109.46998 * 90.00073 * 8 6 4 10 10 H 1.48498 * 109.47187 * 209.99665 * 8 6 4 11 11 H 1.48492 * 109.47311 * 330.00072 * 8 6 4 12 12 C 1.34780 * 120.00136 * 180.02562 * 2 1 3 13 13 O 1.21276 * 120.00277 * 179.97438 * 12 2 1 14 14 C 1.50697 * 120.00048 * 0.02562 * 12 2 1 15 15 N 1.46500 * 109.47381 * 179.97438 * 14 12 2 16 16 C 1.34773 * 119.99913 * 179.97438 * 15 14 12 17 17 O 1.21288 * 120.00333 * 359.97438 * 16 15 14 18 18 C 1.50698 * 119.99781 * 180.02562 * 16 15 14 19 19 C 1.50707 * 109.47247 * 180.02562 * 18 16 15 20 20 C 1.38238 * 119.99792 * 89.99994 * 19 18 16 21 21 C 1.38235 * 119.99712 * 179.97438 * 20 19 18 22 22 C 1.38234 * 120.00220 * 359.97124 * 21 20 19 23 23 C 1.38233 * 120.00037 * 0.28719 * 22 21 20 24 24 C 1.38234 * 120.00179 * 269.97930 * 19 18 16 25 25 H 1.09006 * 109.46794 * 269.99730 * 1 2 3 26 26 H 1.08997 * 109.47196 * 29.99751 * 1 2 3 27 27 H 1.08999 * 109.46902 * 149.99867 * 1 2 3 28 28 H 1.09004 * 109.46821 * 30.00727 * 3 2 1 29 29 H 1.09005 * 109.47037 * 150.00107 * 3 2 1 30 30 H 0.97003 * 119.99999 * 180.02562 * 7 6 4 31 31 H 1.09000 * 109.47516 * 59.99093 * 14 12 2 32 32 H 1.09004 * 109.46835 * 299.99723 * 14 12 2 33 33 H 0.96998 * 119.99656 * 0.02562 * 15 14 12 34 34 H 1.09005 * 109.47656 * 60.00320 * 18 16 15 35 35 H 1.09000 * 109.47265 * 299.99628 * 18 16 15 36 36 H 1.08005 * 120.00068 * 359.97438 * 20 19 18 37 37 H 1.07999 * 119.99770 * 179.97438 * 21 20 19 38 38 H 1.08002 * 119.99744 * 180.02562 * 22 21 20 39 39 H 1.07998 * 120.00395 * 179.72811 * 23 22 21 40 40 H 1.07999 * 119.99968 * 359.97438 * 24 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4486 1.7038 -1.4208 5 1 2.0980 1.0959 -2.2417 6 6 3.1259 2.8781 -1.6726 7 7 3.3455 3.2576 -2.9125 8 14 3.7317 3.9299 -0.2528 9 1 5.1051 3.5092 0.1242 10 1 3.7466 5.3565 -0.6647 11 1 2.8251 3.7602 0.9110 12 6 2.1389 -1.1672 -0.0005 13 8 3.3517 -1.1672 -0.0010 14 6 1.3855 -2.4723 -0.0017 15 7 2.3375 -3.5858 -0.0027 16 6 1.8882 -4.8565 -0.0033 17 8 0.6957 -5.0781 -0.0026 18 6 2.8675 -6.0019 -0.0037 19 6 2.1140 -7.3071 -0.0050 20 6 1.7689 -7.9047 -1.2028 21 6 1.0783 -9.1022 -1.2040 22 6 0.7332 -9.7022 -0.0075 23 6 1.0735 -9.1019 1.1903 24 6 1.7683 -7.9068 1.1915 25 1 -0.3633 0.0000 1.0277 26 1 -0.3633 0.8900 -0.5138 27 1 -0.3633 -0.8900 -0.5139 28 1 1.6084 2.0283 0.5140 29 1 3.1500 1.1383 0.5138 30 1 3.8224 4.0835 -3.0897 31 1 0.7590 -2.5295 -0.8918 32 1 0.7585 -2.5306 0.8881 33 1 3.2911 -3.4086 -0.0022 34 1 3.4941 -5.9447 0.8864 35 1 3.4942 -5.9438 -0.8937 36 1 2.0390 -7.4361 -2.1377 37 1 0.8083 -9.5689 -2.1398 38 1 0.1939 -10.6380 -0.0085 39 1 0.8001 -9.5685 2.1251 40 1 2.0385 -7.4402 2.1273 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000060657625.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:58:20 Heat of formation + Delta-G solvation = -68.161922 kcal Electronic energy + Delta-G solvation = -21922.362535 eV Core-core repulsion = 18508.136420 eV Total energy + Delta-G solvation = -3414.226116 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.35167 -40.54077 -39.48970 -36.81868 -35.49772 -34.70313 -33.82561 -31.73374 -31.14635 -29.47068 -27.77173 -27.13123 -24.27098 -23.44156 -22.64138 -21.37320 -20.33139 -19.16495 -18.58253 -17.90158 -17.46406 -17.10354 -17.03937 -16.59557 -16.37641 -15.95642 -15.70649 -15.39817 -14.92691 -14.50368 -14.27662 -14.16966 -14.05450 -13.88972 -13.67877 -13.57996 -13.34328 -13.22270 -12.89347 -12.78242 -12.44107 -12.04098 -11.98383 -11.83698 -11.75610 -11.09005 -10.88403 -10.83104 -10.23929 -9.76599 -9.60991 -9.48727 -8.34404 -6.40302 0.44110 0.55582 1.34401 1.37817 1.46447 1.55114 1.63211 1.88438 2.31089 2.46048 2.96581 3.00066 3.48382 3.69990 3.97319 4.00536 4.19476 4.23223 4.31166 4.31861 4.40060 4.42678 4.60532 4.64528 4.68639 4.78429 4.80870 4.91571 4.95269 5.14484 5.19797 5.23987 5.43248 5.52102 5.59548 5.65863 5.70185 6.15931 6.20352 6.46377 6.54371 6.61688 7.12994 7.16428 7.27751 8.82463 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.038255 B = 0.002639 C = 0.002618 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 731.753052 B =10608.592090 C =10693.702466 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.072 3.928 2 N -0.600 5.600 3 C 0.222 3.778 4 C -0.538 4.538 5 H 0.028 0.972 6 C 0.010 3.990 7 N -0.946 5.946 8 Si 0.950 3.050 9 H -0.274 1.274 10 H -0.277 1.277 11 H -0.236 1.236 12 C 0.496 3.504 13 O -0.581 6.581 14 C 0.114 3.886 15 N -0.717 5.717 16 C 0.519 3.481 17 O -0.572 6.572 18 C -0.097 4.097 19 C -0.081 4.081 20 C -0.124 4.124 21 C -0.131 4.131 22 C -0.130 4.130 23 C -0.129 4.129 24 C -0.121 4.121 25 H 0.085 0.915 26 H 0.071 0.929 27 H 0.085 0.915 28 H 0.054 0.946 29 H 0.025 0.975 30 H 0.269 0.731 31 H 0.100 0.900 32 H 0.115 0.885 33 H 0.415 0.585 34 H 0.129 0.871 35 H 0.123 0.877 36 H 0.125 0.875 37 H 0.138 0.862 38 H 0.142 0.858 39 H 0.141 0.859 40 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.104 -22.310 10.005 24.978 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 N -0.331 5.331 3 C 0.100 3.900 4 C -0.576 4.576 5 H 0.046 0.954 6 C -0.188 4.188 7 N -0.586 5.586 8 Si 0.772 3.228 9 H -0.200 1.200 10 H -0.203 1.203 11 H -0.159 1.159 12 C 0.284 3.716 13 O -0.462 6.462 14 C -0.013 4.013 15 N -0.372 5.372 16 C 0.307 3.693 17 O -0.451 6.451 18 C -0.137 4.137 19 C -0.081 4.081 20 C -0.142 4.142 21 C -0.149 4.149 22 C -0.148 4.148 23 C -0.147 4.147 24 C -0.139 4.139 25 H 0.103 0.897 26 H 0.090 0.910 27 H 0.104 0.896 28 H 0.072 0.928 29 H 0.043 0.957 30 H 0.078 0.922 31 H 0.118 0.882 32 H 0.132 0.868 33 H 0.253 0.747 34 H 0.147 0.853 35 H 0.141 0.859 36 H 0.143 0.857 37 H 0.156 0.844 38 H 0.159 0.841 39 H 0.158 0.842 40 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -5.284 -22.284 9.904 24.952 hybrid contribution 0.801 1.073 -0.256 1.363 sum -4.484 -21.210 9.648 23.729 Atomic orbital electron populations 1.22055 0.77363 1.04206 1.03383 1.47878 1.08594 1.05862 1.70774 1.19415 0.92974 0.82144 0.95435 1.21540 1.36937 1.06810 0.92362 0.95374 1.25879 0.95300 0.98967 0.98663 1.70053 1.42616 1.24493 1.21389 0.85685 0.79653 0.77634 0.79790 1.19997 1.20273 1.15929 1.20921 0.87883 0.86397 0.76396 1.90626 1.15620 1.87590 1.52388 1.21036 0.91972 0.83019 1.05304 1.45841 1.11422 1.04709 1.75201 1.21037 0.89822 0.83615 0.74867 1.90704 1.18354 1.85132 1.50922 1.20722 0.96837 0.88390 1.07705 1.19491 0.99470 0.95155 0.94031 1.21258 0.98943 0.96261 0.97778 1.21411 0.98506 0.95702 0.99250 1.21478 0.99999 1.00832 0.92445 1.21429 0.98401 0.95721 0.99176 1.21261 0.98729 0.96173 0.97734 0.89701 0.91038 0.89595 0.92800 0.95691 0.92248 0.88224 0.86764 0.74678 0.85339 0.85889 0.85694 0.84439 0.84060 0.84163 0.85190 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.96 10.24 127.77 1.31 3.27 16 2 N -0.60 -23.11 2.86 -851.13 -2.43 -25.54 16 3 C 0.22 10.38 4.23 85.63 0.36 10.74 16 4 C -0.54 -30.91 9.94 25.60 0.25 -30.65 16 5 H 0.03 1.82 8.06 -2.91 -0.02 1.79 16 6 C 0.01 0.58 5.47 84.66 0.46 1.04 16 7 N -0.95 -59.07 13.96 21.45 0.30 -58.77 16 8 Si 0.95 43.27 27.47 68.60 1.88 45.15 16 9 H -0.27 -12.50 7.11 99.48 0.71 -11.80 16 10 H -0.28 -12.24 7.11 99.48 0.71 -11.53 16 11 H -0.24 -9.55 6.54 99.48 0.65 -8.90 16 12 C 0.50 18.71 7.74 87.66 0.68 19.39 16 13 O -0.58 -26.36 15.25 -3.02 -0.05 -26.40 16 14 C 0.11 3.22 4.71 85.63 0.40 3.62 16 15 N -0.72 -18.81 5.53 -466.79 -2.58 -21.39 16 16 C 0.52 13.06 7.82 87.66 0.69 13.75 16 17 O -0.57 -18.33 16.03 -3.06 -0.05 -18.38 16 18 C -0.10 -1.73 5.83 29.10 0.17 -1.56 16 19 C -0.08 -1.66 4.37 -19.86 -0.09 -1.75 16 20 C -0.12 -2.52 9.70 22.27 0.22 -2.30 16 21 C -0.13 -2.34 10.05 22.27 0.22 -2.12 16 22 C -0.13 -2.14 10.05 22.27 0.22 -1.91 16 23 C -0.13 -2.21 10.05 22.27 0.22 -1.99 16 24 C -0.12 -2.32 9.70 22.27 0.22 -2.10 16 25 H 0.08 1.76 8.14 -2.38 -0.02 1.74 16 26 H 0.07 2.09 8.07 -2.39 -0.02 2.07 16 27 H 0.09 1.95 6.44 -2.39 -0.02 1.94 16 28 H 0.05 2.29 7.13 -2.39 -0.02 2.27 16 29 H 0.03 1.24 6.85 -2.38 -0.02 1.22 16 30 H 0.27 15.58 8.31 -92.71 -0.77 14.81 16 31 H 0.10 2.75 7.40 -2.39 -0.02 2.74 16 32 H 0.11 2.76 8.11 -2.38 -0.02 2.74 16 33 H 0.42 10.72 7.44 -92.71 -0.69 10.03 16 34 H 0.13 1.65 8.09 -2.38 -0.02 1.63 16 35 H 0.12 1.74 8.08 -2.39 -0.02 1.72 16 36 H 0.13 2.26 8.06 -2.91 -0.02 2.24 16 37 H 0.14 1.85 8.06 -2.91 -0.02 1.83 16 38 H 0.14 1.59 8.06 -2.91 -0.02 1.56 16 39 H 0.14 1.70 8.06 -2.91 -0.02 1.68 16 40 H 0.13 2.08 8.06 -2.91 -0.02 2.05 16 Total: -1.00 -78.78 344.15 2.72 -76.06 By element: Atomic # 1 Polarization: 21.55 SS G_CDS: 0.30 Total: 21.85 kcal Atomic # 6 Polarization: 2.09 SS G_CDS: 5.34 Total: 7.43 kcal Atomic # 7 Polarization: -100.99 SS G_CDS: -4.71 Total: -105.70 kcal Atomic # 8 Polarization: -44.69 SS G_CDS: -0.10 Total: -44.79 kcal Atomic # 14 Polarization: 43.27 SS G_CDS: 1.88 Total: 45.15 kcal Total: -78.78 2.72 -76.06 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000060657625.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.896 kcal (2) G-P(sol) polarization free energy of solvation -78.777 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.881 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.719 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.058 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.162 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds