Wall clock time and date at job start Tue Mar 31 2020 02:59:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.36940 * 119.99747 * 2 1 4 4 H 1.07999 * 119.99953 * 200.27452 * 3 2 1 5 5 C 1.38814 * 119.99953 * 20.27346 * 3 2 1 6 6 N 1.31620 * 120.00039 * 15.01844 * 5 3 2 7 7 Si 1.86794 * 119.99913 * 195.02114 * 5 3 2 8 8 H 1.48499 * 109.47590 * 85.00176 * 7 5 3 9 9 H 1.48498 * 109.47416 * 205.00248 * 7 5 3 10 10 H 1.48505 * 109.47111 * 325.00014 * 7 5 3 11 11 C 1.46495 * 120.00083 * 179.97438 * 2 1 3 12 12 C 1.50701 * 109.47425 * 270.00097 * 11 2 1 13 13 O 1.21286 * 119.99815 * 0.02562 * 12 11 2 14 14 N 1.34771 * 120.00166 * 180.02562 * 12 11 2 15 15 C 1.46506 * 120.00061 * 179.97438 * 14 12 11 16 16 C 1.53003 * 109.46738 * 180.02562 * 15 14 12 17 17 H 1.08994 * 110.66824 * 308.21470 * 16 15 14 18 18 C 1.54707 * 110.74422 * 184.99926 * 16 15 14 19 19 C 1.51643 * 101.94121 * 216.44817 * 18 16 15 20 20 C 1.37747 * 132.16817 * 195.60620 * 19 18 16 21 21 C 1.38348 * 119.97742 * 179.10806 * 20 19 18 22 22 C 1.38289 * 119.76416 * 359.73147 * 21 20 19 23 23 C 1.37932 * 120.35186 * 0.73447 * 22 21 20 24 24 C 1.38881 * 107.04484 * 15.14677 * 19 18 16 25 25 O 1.36131 * 111.21921 * 1.43020 * 24 19 18 26 26 H 1.08996 * 109.47257 * 275.09857 * 1 2 3 27 27 H 1.09000 * 109.47424 * 35.10556 * 1 2 3 28 28 H 1.09002 * 109.46731 * 155.10722 * 1 2 3 29 29 H 0.97005 * 120.00122 * 179.97438 * 6 5 3 30 30 H 1.08999 * 109.46833 * 150.00598 * 11 2 1 31 31 H 1.08993 * 109.47304 * 30.00515 * 11 2 1 32 32 H 0.97000 * 119.99964 * 0.02562 * 14 12 11 33 33 H 1.08999 * 109.46713 * 60.00417 * 15 14 12 34 34 H 1.08996 * 109.46854 * 300.00193 * 15 14 12 35 35 H 1.09001 * 110.93577 * 98.29157 * 18 16 15 36 36 H 1.09000 * 110.93873 * 334.61528 * 18 16 15 37 37 H 1.08006 * 120.01093 * 359.09257 * 20 19 18 38 38 H 1.08000 * 120.11610 * 179.97438 * 21 20 19 39 39 H 1.08001 * 119.82165 * 180.45695 * 22 21 20 40 40 H 1.08003 * 119.87489 * 179.71903 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1860 0.0000 4 1 3.1795 1.2150 -0.3241 5 6 1.5200 2.3509 0.4166 6 7 0.3863 2.2844 1.0818 7 14 2.2817 4.0127 0.0328 8 1 1.8687 4.4447 -1.3266 9 1 1.8206 5.0110 1.0308 10 1 3.7617 3.9038 0.0892 11 6 2.1975 -1.2687 0.0006 12 6 2.4487 -1.7032 1.4216 13 8 2.0542 -1.0204 2.3431 14 7 3.1117 -2.8503 1.6683 15 6 3.3564 -3.2724 3.0497 16 6 4.1224 -4.5968 3.0502 17 1 3.6213 -5.3312 2.4197 18 6 4.2879 -5.1337 4.4917 19 6 5.6721 -5.7507 4.4397 20 6 6.3241 -6.6309 5.2749 21 6 7.6066 -7.0513 4.9708 22 6 8.2268 -6.5891 3.8245 23 6 7.5794 -5.7003 2.9918 24 6 6.2897 -5.2692 3.2928 25 8 5.4820 -4.3990 2.6266 26 1 -0.3633 0.0913 1.0235 27 1 -0.3634 0.8407 -0.5910 28 1 -0.3633 -0.9322 -0.4326 29 1 -0.0535 3.0984 1.3733 30 1 3.1500 -1.1385 -0.5132 31 1 1.6085 -2.0285 -0.5130 32 1 3.4275 -3.3961 0.9313 33 1 2.4041 -3.4028 3.5638 34 1 3.9453 -2.5122 3.5630 35 1 3.5334 -5.8879 4.7154 36 1 4.2507 -4.3207 5.2168 37 1 5.8343 -6.9926 6.1670 38 1 8.1200 -7.7411 5.6243 39 1 9.2251 -6.9224 3.5823 40 1 8.0729 -5.3407 2.1009 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000068971791.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:59:37 Heat of formation + Delta-G solvation = -8.306596 kcal Electronic energy + Delta-G solvation = -22277.526198 eV Core-core repulsion = 18865.895604 eV Total energy + Delta-G solvation = -3411.630594 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.38586 -38.76215 -37.67799 -35.20246 -34.21992 -32.83936 -31.23961 -30.27080 -30.12855 -27.44970 -25.83752 -25.33782 -22.75910 -22.01348 -21.92198 -21.29500 -19.59756 -17.75655 -17.01342 -16.83739 -16.53162 -16.18253 -15.44243 -14.90025 -14.72947 -14.37387 -14.28472 -13.78184 -13.43596 -13.38590 -13.17900 -13.03573 -12.94614 -12.44464 -12.18781 -12.01762 -11.84033 -11.62655 -11.12375 -11.04743 -10.98119 -10.79517 -10.60020 -10.31609 -9.95626 -9.81979 -9.16315 -9.01201 -8.52744 -8.41952 -8.37090 -6.72857 -5.63326 -3.07912 1.02042 1.12508 2.96312 3.43289 3.45318 3.49926 3.52077 3.62795 3.68157 4.12489 4.39339 4.57276 4.60691 4.69337 4.78870 4.89197 4.98811 5.12582 5.31203 5.37532 5.46849 5.51185 5.63327 5.66555 5.74960 5.86321 6.05028 6.07211 6.16252 6.20412 6.21038 6.35419 6.38052 6.76758 6.93683 7.00012 7.42687 7.80875 7.90352 8.13494 8.44754 9.15751 9.29359 9.91278 10.37860 11.41468 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.030009 B = 0.002875 C = 0.002779 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 932.842951 B = 9737.989302 C =10074.755358 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.163 3.837 2 N -0.573 5.573 3 C -0.258 4.258 4 H 0.070 0.930 5 C 0.006 3.994 6 N -0.896 5.896 7 Si 0.906 3.094 8 H -0.287 1.287 9 H -0.291 1.291 10 H -0.280 1.280 11 C 0.133 3.867 12 C 0.469 3.531 13 O -0.509 6.509 14 N -0.749 5.749 15 C 0.125 3.875 16 C 0.072 3.928 17 H 0.094 0.906 18 C -0.103 4.103 19 C -0.175 4.175 20 C -0.071 4.071 21 C -0.153 4.153 22 C -0.086 4.086 23 C -0.140 4.140 24 C 0.110 3.890 25 O -0.294 6.294 26 H 0.034 0.966 27 H 0.047 0.953 28 H -0.003 1.003 29 H 0.252 0.748 30 H 0.074 0.926 31 H 0.067 0.933 32 H 0.394 0.606 33 H 0.082 0.918 34 H 0.072 0.928 35 H 0.095 0.905 36 H 0.096 0.904 37 H 0.124 0.876 38 H 0.126 0.874 39 H 0.130 0.870 40 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.215 -21.790 5.026 25.017 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 N -0.293 5.293 3 C -0.387 4.387 4 H 0.088 0.912 5 C -0.193 4.193 6 N -0.540 5.540 7 Si 0.736 3.264 8 H -0.214 1.214 9 H -0.218 1.218 10 H -0.206 1.206 11 C 0.000 4.000 12 C 0.253 3.747 13 O -0.381 6.381 14 N -0.406 5.406 15 C 0.000 4.000 16 C 0.016 3.984 17 H 0.111 0.889 18 C -0.141 4.141 19 C -0.176 4.176 20 C -0.089 4.089 21 C -0.171 4.171 22 C -0.105 4.105 23 C -0.159 4.159 24 C 0.064 3.936 25 O -0.208 6.208 26 H 0.053 0.947 27 H 0.066 0.934 28 H 0.016 0.984 29 H 0.062 0.938 30 H 0.092 0.908 31 H 0.085 0.915 32 H 0.227 0.773 33 H 0.100 0.900 34 H 0.090 0.910 35 H 0.113 0.887 36 H 0.115 0.885 37 H 0.142 0.858 38 H 0.144 0.856 39 H 0.148 0.852 40 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 10.772 -20.866 5.585 24.138 hybrid contribution 0.542 0.529 -0.048 0.759 sum 11.314 -20.337 5.537 23.922 Atomic orbital electron populations 1.20858 0.81948 0.95427 0.99939 1.43917 1.02122 0.99834 1.83408 1.19167 0.97216 0.84489 1.37876 0.91196 1.25030 0.97898 0.98473 0.97911 1.70126 1.18589 1.26645 1.38642 0.86253 0.78699 0.83949 0.77474 1.21395 1.21761 1.20562 1.21004 0.98023 0.90296 0.90643 1.23711 0.76445 0.78898 0.95606 1.90705 1.48759 1.52216 1.46392 1.46540 1.61260 1.26233 1.06583 1.21312 0.98832 0.93080 0.86744 1.23691 0.81511 0.98300 0.94888 0.88874 1.21786 0.94193 1.00992 0.97126 1.20815 0.97732 1.02157 0.96865 1.20318 0.94464 0.95672 0.98430 1.21024 0.95185 1.02541 0.98371 1.20879 0.99579 0.95974 0.94019 1.20309 0.92964 1.00542 1.02085 1.19643 0.92786 0.90212 0.90931 1.86948 1.17411 1.53375 1.63072 0.94733 0.93437 0.98424 0.93810 0.90826 0.91479 0.77301 0.89997 0.90990 0.88697 0.88544 0.85825 0.85579 0.85236 0.85371 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 4.21 9.02 59.85 0.54 4.75 16 2 N -0.57 -15.12 2.42 -182.51 -0.44 -15.56 16 3 C -0.26 -7.44 9.68 -15.06 -0.15 -7.59 16 4 H 0.07 1.96 7.86 -52.49 -0.41 1.54 16 5 C 0.01 0.18 5.06 -17.43 -0.09 0.09 16 6 N -0.90 -27.67 10.66 55.49 0.59 -27.07 16 7 Si 0.91 22.79 29.58 -169.99 -5.03 17.77 16 8 H -0.29 -7.06 7.11 56.52 0.40 -6.65 16 9 H -0.29 -7.40 7.11 56.52 0.40 -7.00 16 10 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 11 C 0.13 2.75 6.19 -5.20 -0.03 2.72 16 12 C 0.47 9.91 7.90 -10.99 -0.09 9.82 16 13 O -0.51 -13.66 16.43 5.55 0.09 -13.57 16 14 N -0.75 -11.66 5.56 -60.29 -0.33 -11.99 16 15 C 0.13 1.74 5.35 -4.04 -0.02 1.72 16 16 C 0.07 0.79 3.65 -25.83 -0.09 0.69 16 17 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 18 C -0.10 -0.97 6.65 -26.52 -0.18 -1.14 16 19 C -0.17 -1.83 6.27 -104.10 -0.65 -2.48 16 20 C -0.07 -0.62 10.03 -39.72 -0.40 -1.02 16 21 C -0.15 -1.21 10.07 -39.52 -0.40 -1.61 16 22 C -0.09 -0.71 10.02 -39.67 -0.40 -1.11 16 23 C -0.14 -1.43 10.06 -39.31 -0.40 -1.82 16 24 C 0.11 1.30 7.03 -38.96 -0.27 1.03 16 25 O -0.29 -3.85 10.81 -20.16 -0.22 -4.07 16 26 H 0.03 1.00 7.40 -51.93 -0.38 0.61 16 27 H 0.05 1.29 7.21 -51.93 -0.37 0.91 16 28 H 0.00 -0.06 7.84 -51.93 -0.41 -0.47 16 29 H 0.25 7.49 8.31 -40.82 -0.34 7.15 16 30 H 0.07 1.40 8.03 -51.93 -0.42 0.99 16 31 H 0.07 1.16 7.86 -51.93 -0.41 0.75 16 32 H 0.39 4.92 8.47 -40.82 -0.35 4.57 16 33 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 34 H 0.07 1.16 8.14 -51.93 -0.42 0.73 16 35 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 36 H 0.10 0.90 7.92 -51.93 -0.41 0.49 16 37 H 0.12 0.82 8.06 -52.48 -0.42 0.39 16 38 H 0.13 0.69 8.06 -52.49 -0.42 0.27 16 39 H 0.13 0.73 8.06 -52.49 -0.42 0.31 16 40 H 0.13 1.15 8.06 -52.48 -0.42 0.73 16 LS Contribution 339.45 15.07 5.12 5.12 Total: -1.00 -36.58 339.45 -8.52 -45.10 By element: Atomic # 1 Polarization: 5.90 SS G_CDS: -5.68 Total: 0.23 kcal Atomic # 6 Polarization: 6.67 SS G_CDS: -2.62 Total: 4.05 kcal Atomic # 7 Polarization: -54.44 SS G_CDS: -0.18 Total: -54.62 kcal Atomic # 8 Polarization: -17.51 SS G_CDS: -0.13 Total: -17.64 kcal Atomic # 14 Polarization: 22.79 SS G_CDS: -5.03 Total: 17.77 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -36.58 -8.52 -45.10 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068971791.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.794 kcal (2) G-P(sol) polarization free energy of solvation -36.578 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.216 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.523 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.101 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.307 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds