Wall clock time and date at job start Tue Mar 31 2020 02:59:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.36940 * 119.99747 * 2 1 4 4 H 1.07999 * 119.99953 * 200.27452 * 3 2 1 5 5 C 1.38814 * 119.99953 * 20.27346 * 3 2 1 6 6 N 1.31620 * 120.00039 * 15.01844 * 5 3 2 7 7 Si 1.86794 * 119.99913 * 195.02114 * 5 3 2 8 8 H 1.48499 * 109.47590 * 85.00176 * 7 5 3 9 9 H 1.48498 * 109.47416 * 205.00248 * 7 5 3 10 10 H 1.48505 * 109.47111 * 325.00014 * 7 5 3 11 11 C 1.46495 * 120.00083 * 179.97438 * 2 1 3 12 12 C 1.50701 * 109.47425 * 270.00097 * 11 2 1 13 13 O 1.21286 * 119.99815 * 0.02562 * 12 11 2 14 14 N 1.34771 * 120.00166 * 180.02562 * 12 11 2 15 15 C 1.46506 * 120.00061 * 179.97438 * 14 12 11 16 16 C 1.53003 * 109.46738 * 180.02562 * 15 14 12 17 17 H 1.08994 * 110.66824 * 308.21470 * 16 15 14 18 18 C 1.54707 * 110.74422 * 184.99926 * 16 15 14 19 19 C 1.51643 * 101.94121 * 216.44817 * 18 16 15 20 20 C 1.37747 * 132.16817 * 195.60620 * 19 18 16 21 21 C 1.38348 * 119.97742 * 179.10806 * 20 19 18 22 22 C 1.38289 * 119.76416 * 359.73147 * 21 20 19 23 23 C 1.37932 * 120.35186 * 0.73447 * 22 21 20 24 24 C 1.38881 * 107.04484 * 15.14677 * 19 18 16 25 25 O 1.36131 * 111.21921 * 1.43020 * 24 19 18 26 26 H 1.08996 * 109.47257 * 275.09857 * 1 2 3 27 27 H 1.09000 * 109.47424 * 35.10556 * 1 2 3 28 28 H 1.09002 * 109.46731 * 155.10722 * 1 2 3 29 29 H 0.97005 * 120.00122 * 179.97438 * 6 5 3 30 30 H 1.08999 * 109.46833 * 150.00598 * 11 2 1 31 31 H 1.08993 * 109.47304 * 30.00515 * 11 2 1 32 32 H 0.97000 * 119.99964 * 0.02562 * 14 12 11 33 33 H 1.08999 * 109.46713 * 60.00417 * 15 14 12 34 34 H 1.08996 * 109.46854 * 300.00193 * 15 14 12 35 35 H 1.09001 * 110.93577 * 98.29157 * 18 16 15 36 36 H 1.09000 * 110.93873 * 334.61528 * 18 16 15 37 37 H 1.08006 * 120.01093 * 359.09257 * 20 19 18 38 38 H 1.08000 * 120.11610 * 179.97438 * 21 20 19 39 39 H 1.08001 * 119.82165 * 180.45695 * 22 21 20 40 40 H 1.08003 * 119.87489 * 179.71903 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1860 0.0000 4 1 3.1795 1.2150 -0.3241 5 6 1.5200 2.3509 0.4166 6 7 0.3863 2.2844 1.0818 7 14 2.2817 4.0127 0.0328 8 1 1.8687 4.4447 -1.3266 9 1 1.8206 5.0110 1.0308 10 1 3.7617 3.9038 0.0892 11 6 2.1975 -1.2687 0.0006 12 6 2.4487 -1.7032 1.4216 13 8 2.0542 -1.0204 2.3431 14 7 3.1117 -2.8503 1.6683 15 6 3.3564 -3.2724 3.0497 16 6 4.1224 -4.5968 3.0502 17 1 3.6213 -5.3312 2.4197 18 6 4.2879 -5.1337 4.4917 19 6 5.6721 -5.7507 4.4397 20 6 6.3241 -6.6309 5.2749 21 6 7.6066 -7.0513 4.9708 22 6 8.2268 -6.5891 3.8245 23 6 7.5794 -5.7003 2.9918 24 6 6.2897 -5.2692 3.2928 25 8 5.4820 -4.3990 2.6266 26 1 -0.3633 0.0913 1.0235 27 1 -0.3634 0.8407 -0.5910 28 1 -0.3633 -0.9322 -0.4326 29 1 -0.0535 3.0984 1.3733 30 1 3.1500 -1.1385 -0.5132 31 1 1.6085 -2.0285 -0.5130 32 1 3.4275 -3.3961 0.9313 33 1 2.4041 -3.4028 3.5638 34 1 3.9453 -2.5122 3.5630 35 1 3.5334 -5.8879 4.7154 36 1 4.2507 -4.3207 5.2168 37 1 5.8343 -6.9926 6.1670 38 1 8.1200 -7.7411 5.6243 39 1 9.2251 -6.9224 3.5823 40 1 8.0729 -5.3407 2.1009 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000068971791.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:59:36 Heat of formation + Delta-G solvation = -33.685032 kcal Electronic energy + Delta-G solvation = -22278.626690 eV Core-core repulsion = 18865.895604 eV Total energy + Delta-G solvation = -3412.731086 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.19054 -40.38792 -38.47980 -37.10173 -35.69355 -33.72965 -33.28085 -31.24227 -30.95493 -29.00301 -27.89302 -26.61250 -23.72291 -23.38805 -22.79454 -22.44086 -21.21946 -18.83401 -18.54602 -18.09374 -17.72921 -17.38822 -16.81341 -16.32013 -16.19297 -15.73359 -15.36268 -15.11588 -14.86889 -14.63618 -14.51583 -14.10450 -13.99417 -13.69883 -13.58660 -13.29287 -13.04700 -12.81487 -12.72677 -12.55620 -12.51851 -12.22193 -12.03960 -11.87872 -11.85742 -11.70301 -10.90255 -10.52431 -9.99700 -9.83936 -9.12002 -8.83321 -7.81615 -5.29062 0.33833 0.42006 1.44529 1.47086 1.55171 1.93899 2.13575 2.34495 2.52849 2.76833 3.32361 3.33792 3.56932 3.71513 3.81761 3.94040 4.00750 4.21568 4.30319 4.30598 4.44660 4.54804 4.62486 4.63825 4.67337 4.73446 4.81066 4.85668 4.89031 5.12010 5.30349 5.39530 5.46850 5.55514 5.56995 5.60631 5.71287 5.74820 6.22845 6.28018 6.74464 7.13105 7.55725 7.85806 8.25488 9.22130 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.030009 B = 0.002875 C = 0.002779 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 932.842951 B = 9737.989302 C =10074.755358 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.177 3.823 2 N -0.594 5.594 3 C -0.265 4.265 4 H 0.075 0.925 5 C -0.057 4.057 6 N -0.934 5.934 7 Si 0.973 3.027 8 H -0.276 1.276 9 H -0.299 1.299 10 H -0.271 1.271 11 C 0.127 3.873 12 C 0.472 3.528 13 O -0.575 6.575 14 N -0.725 5.725 15 C 0.127 3.873 16 C 0.080 3.920 17 H 0.116 0.884 18 C -0.100 4.100 19 C -0.187 4.187 20 C -0.077 4.077 21 C -0.150 4.150 22 C -0.088 4.088 23 C -0.155 4.155 24 C 0.075 3.925 25 O -0.320 6.320 26 H -0.007 1.007 27 H 0.024 0.976 28 H 0.040 0.960 29 H 0.245 0.755 30 H 0.094 0.906 31 H 0.110 0.890 32 H 0.413 0.587 33 H 0.086 0.914 34 H 0.045 0.955 35 H 0.120 0.880 36 H 0.091 0.909 37 H 0.146 0.854 38 H 0.155 0.845 39 H 0.157 0.843 40 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.970 -24.369 4.756 28.012 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 N -0.314 5.314 3 C -0.395 4.395 4 H 0.093 0.907 5 C -0.252 4.252 6 N -0.580 5.580 7 Si 0.801 3.199 8 H -0.202 1.202 9 H -0.226 1.226 10 H -0.196 1.196 11 C -0.004 4.004 12 C 0.258 3.742 13 O -0.452 6.452 14 N -0.381 5.381 15 C 0.003 3.997 16 C 0.024 3.976 17 H 0.134 0.866 18 C -0.137 4.137 19 C -0.187 4.187 20 C -0.095 4.095 21 C -0.168 4.168 22 C -0.105 4.105 23 C -0.174 4.174 24 C 0.030 3.970 25 O -0.235 6.235 26 H 0.011 0.989 27 H 0.042 0.958 28 H 0.059 0.941 29 H 0.055 0.945 30 H 0.112 0.888 31 H 0.127 0.873 32 H 0.250 0.750 33 H 0.104 0.896 34 H 0.064 0.936 35 H 0.138 0.862 36 H 0.109 0.891 37 H 0.164 0.836 38 H 0.173 0.827 39 H 0.174 0.826 40 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 12.593 -23.540 5.278 27.213 hybrid contribution 0.130 1.121 0.056 1.130 sum 12.723 -22.419 5.334 26.324 Atomic orbital electron populations 1.20577 0.82313 0.96538 0.97336 1.44088 1.02374 1.01147 1.83818 1.19553 0.97412 0.85878 1.36669 0.90708 1.25885 0.98724 1.02175 0.98449 1.70331 1.20274 1.26924 1.40496 0.85208 0.78154 0.79328 0.77258 1.20241 1.22562 1.19576 1.21267 0.99215 0.89189 0.90681 1.23453 0.76228 0.79577 0.94987 1.90697 1.51866 1.54642 1.48036 1.46127 1.59054 1.24624 1.08322 1.21351 0.99210 0.94117 0.85070 1.23644 0.80809 0.96536 0.96638 0.86640 1.21795 0.94730 1.01392 0.95781 1.21020 0.98091 1.02719 0.96908 1.20680 0.94933 0.95065 0.98828 1.21451 0.94875 1.02121 0.98316 1.21252 1.00607 0.95014 0.93659 1.20593 0.92737 1.01217 1.02867 1.19966 0.93640 0.91335 0.92043 1.86882 1.18241 1.54527 1.63825 0.98873 0.95764 0.94148 0.94548 0.88829 0.87267 0.75038 0.89569 0.93630 0.86151 0.89087 0.83622 0.82717 0.82580 0.85091 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 9.29 9.02 127.77 1.15 10.44 16 2 N -0.59 -31.26 2.42 -731.32 -1.77 -33.03 16 3 C -0.26 -15.38 9.68 84.03 0.81 -14.57 16 4 H 0.08 4.16 7.86 -2.91 -0.02 4.13 16 5 C -0.06 -3.43 5.06 84.86 0.43 -3.00 16 6 N -0.93 -59.75 10.66 21.65 0.23 -59.52 16 7 Si 0.97 47.72 29.58 68.60 2.03 49.75 16 8 H -0.28 -12.92 7.11 99.48 0.71 -12.22 16 9 H -0.30 -14.88 7.11 99.48 0.71 -14.17 16 10 H -0.27 -12.70 7.11 99.48 0.71 -11.99 16 11 C 0.13 5.04 6.19 85.63 0.53 5.57 16 12 C 0.47 19.72 7.90 87.66 0.69 20.41 16 13 O -0.58 -31.66 16.43 -3.05 -0.05 -31.71 16 14 N -0.73 -21.69 5.56 -463.05 -2.57 -24.27 16 15 C 0.13 3.49 5.35 86.38 0.46 3.95 16 16 C 0.08 1.63 3.65 31.18 0.11 1.75 16 17 H 0.12 1.85 8.14 -2.39 -0.02 1.83 16 18 C -0.10 -1.72 6.65 30.73 0.20 -1.51 16 19 C -0.19 -3.61 6.27 -19.53 -0.12 -3.73 16 20 C -0.08 -1.15 10.03 22.18 0.22 -0.93 16 21 C -0.15 -1.91 10.07 22.31 0.22 -1.69 16 22 C -0.09 -1.23 10.02 22.21 0.22 -1.01 16 23 C -0.16 -3.00 10.06 22.45 0.23 -2.77 16 24 C 0.07 1.72 7.03 22.68 0.16 1.88 16 25 O -0.32 -8.20 10.81 -95.05 -1.03 -9.23 16 26 H -0.01 -0.43 7.40 -2.39 -0.02 -0.45 16 27 H 0.02 1.33 7.21 -2.39 -0.02 1.31 16 28 H 0.04 1.72 7.84 -2.39 -0.02 1.70 16 29 H 0.25 15.21 8.31 -92.70 -0.77 14.44 16 30 H 0.09 3.34 8.03 -2.39 -0.02 3.32 16 31 H 0.11 3.39 7.86 -2.39 -0.02 3.38 16 32 H 0.41 9.35 8.47 -92.71 -0.79 8.56 16 33 H 0.09 2.33 8.14 -2.39 -0.02 2.31 16 34 H 0.05 1.51 8.14 -2.39 -0.02 1.49 16 35 H 0.12 1.42 8.14 -2.39 -0.02 1.40 16 36 H 0.09 1.65 7.92 -2.39 -0.02 1.63 16 37 H 0.15 1.45 8.06 -2.91 -0.02 1.43 16 38 H 0.16 1.05 8.06 -2.91 -0.02 1.03 16 39 H 0.16 1.26 8.06 -2.91 -0.02 1.24 16 40 H 0.13 2.28 8.06 -2.91 -0.02 2.26 16 Total: -1.00 -83.01 339.45 2.43 -80.57 By element: Atomic # 1 Polarization: 12.37 SS G_CDS: 0.26 Total: 12.63 kcal Atomic # 6 Polarization: 9.47 SS G_CDS: 5.33 Total: 14.80 kcal Atomic # 7 Polarization: -112.70 SS G_CDS: -4.11 Total: -116.81 kcal Atomic # 8 Polarization: -39.86 SS G_CDS: -1.08 Total: -40.94 kcal Atomic # 14 Polarization: 47.72 SS G_CDS: 2.03 Total: 49.75 kcal Total: -83.01 2.43 -80.57 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068971791.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.889 kcal (2) G-P(sol) polarization free energy of solvation -83.008 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.118 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.433 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.574 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.685 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds