Wall clock time and date at job start Tue Mar 31 2020 02:54:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46507 * 109.46667 * 2 1 4 4 C 1.34772 * 119.99998 * 179.97438 * 3 2 1 5 5 O 1.21282 * 119.99974 * 0.02562 * 4 3 2 6 6 C 1.50696 * 120.00004 * 180.02562 * 4 3 2 7 7 N 1.46509 * 109.47060 * 180.02562 * 6 4 3 8 8 C 1.46502 * 119.99639 * 270.00140 * 7 6 4 9 9 C 1.34770 * 119.99957 * 89.99892 * 7 6 4 10 10 O 1.21551 * 120.00290 * 354.39642 * 9 7 6 11 11 C 1.47884 * 119.99891 * 174.39471 * 9 7 6 12 12 C 1.39923 * 120.02411 * 147.12188 * 11 9 7 13 13 C 1.38332 * 120.35766 * 180.02562 * 12 11 9 14 14 C 1.37751 * 120.41344 * 0.02562 * 13 12 11 15 15 C 1.40753 * 120.03842 * 359.97438 * 14 13 12 16 16 C 1.41434 * 120.17715 * 180.02562 * 15 14 13 17 17 H 1.08000 * 119.99868 * 150.23127 * 16 15 14 18 18 C 1.39936 * 120.00319 * 330.22169 * 16 15 14 19 19 N 1.30826 * 119.99655 * 344.51732 * 18 16 15 20 20 Si 1.86797 * 120.00287 * 164.50659 * 18 16 15 21 21 H 1.48503 * 109.46891 * 0.02562 * 20 18 16 22 22 H 1.48500 * 109.46962 * 120.00288 * 20 18 16 23 23 H 1.48493 * 109.47485 * 240.00326 * 20 18 16 24 24 C 1.38991 * 120.02830 * 327.13997 * 11 9 7 25 25 H 1.09004 * 109.46675 * 179.97438 * 1 2 3 26 26 H 1.08993 * 109.47268 * 299.99400 * 1 2 3 27 27 H 1.08997 * 109.47236 * 60.00459 * 1 2 3 28 28 H 1.08993 * 109.47268 * 240.00600 * 2 1 3 29 29 H 1.08997 * 109.47236 * 119.99540 * 2 1 3 30 30 H 0.96999 * 120.00029 * 359.97438 * 3 2 1 31 31 H 1.09001 * 109.47392 * 60.00207 * 6 4 3 32 32 H 1.08994 * 109.47207 * 300.00212 * 6 4 3 33 33 H 1.09001 * 109.46634 * 269.30279 * 8 7 6 34 34 H 1.08996 * 109.47210 * 29.30742 * 8 7 6 35 35 H 1.09003 * 109.46697 * 149.31129 * 8 7 6 36 36 H 1.07998 * 119.82088 * 0.02562 * 12 11 9 37 37 H 1.07996 * 119.79667 * 180.02562 * 13 12 11 38 38 H 1.07998 * 119.98637 * 179.97438 * 14 13 12 39 39 H 0.96999 * 119.99886 * 179.97438 * 19 18 16 40 40 H 1.08003 * 120.19618 * 359.70416 * 24 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 3.3433 1.6277 0.0005 5 8 4.1315 0.7059 0.0005 6 6 3.8455 3.0485 0.0011 7 7 5.3106 3.0486 0.0010 8 6 6.0432 3.0481 1.2697 9 6 5.9844 3.0491 -1.1662 10 8 5.3809 2.9468 -2.2164 11 6 7.4579 3.1743 -1.1693 12 6 8.2132 2.5298 -2.1552 13 6 9.5920 2.6418 -2.1643 14 6 10.2374 3.3883 -1.2032 15 6 9.4943 4.0438 -0.2036 16 6 10.1539 4.8115 0.7844 17 1 9.6574 5.6617 1.2282 18 6 11.4497 4.4693 1.1869 19 7 11.9370 3.2918 0.8911 20 14 12.4837 5.6939 2.1463 21 1 11.7079 6.9435 2.3513 22 1 12.8427 5.1127 3.4649 23 1 13.7223 5.9988 1.3861 24 6 8.0936 3.9320 -0.1928 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5137 0.8900 27 1 -0.3633 0.5137 -0.8900 28 1 1.8934 -0.5137 -0.8900 29 1 1.8934 -0.5137 0.8900 30 1 1.3879 2.1185 -0.0004 31 1 3.4819 3.5621 0.8911 32 1 3.4825 3.5626 -0.8888 33 1 6.2355 4.0756 1.5785 34 1 5.4488 2.5447 2.0322 35 1 6.9902 2.5237 1.1422 36 1 7.7171 1.9418 -2.9131 37 1 10.1660 2.1409 -2.9297 38 1 11.3141 3.4708 -1.2167 39 1 12.8353 3.0547 1.1697 40 1 7.5142 4.4348 0.5674 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000080363212.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:54:33 Heat of formation + Delta-G solvation = -68.597771 kcal Electronic energy + Delta-G solvation = -22645.881159 eV Core-core repulsion = 19231.636143 eV Total energy + Delta-G solvation = -3414.245016 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.51718 -40.32300 -38.81691 -36.70059 -36.15635 -35.47837 -32.44876 -31.79842 -31.44074 -29.09681 -27.53616 -27.11717 -24.34004 -23.37157 -22.64890 -21.86846 -20.73808 -19.04039 -18.36451 -17.83146 -17.55179 -17.19782 -16.59510 -16.51057 -16.39291 -16.01715 -15.27319 -15.14407 -14.87754 -14.55516 -14.44499 -14.23477 -13.78968 -13.50632 -13.36075 -13.32448 -12.99666 -12.84280 -12.70676 -12.65010 -12.50225 -12.36756 -12.23642 -11.95772 -11.36460 -11.21824 -11.05613 -10.82784 -10.13942 -9.76250 -9.43626 -9.35967 -8.61038 -6.35060 0.44429 0.93656 1.44014 1.49221 1.56983 1.58589 1.68520 2.08083 2.25447 2.38463 2.77944 3.64203 3.70585 3.82941 4.12569 4.17442 4.20222 4.25558 4.33487 4.39150 4.49967 4.53429 4.69210 4.91152 4.94207 4.99323 5.01642 5.04309 5.15777 5.24741 5.31601 5.38450 5.45011 5.56125 5.79253 5.95800 6.03837 6.19665 6.27295 6.52295 6.61807 6.92634 6.94444 7.10465 7.24964 8.38574 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.027903 B = 0.003440 C = 0.003244 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1003.245022 B = 8136.448537 C = 8628.088377 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.109 3.891 3 N -0.715 5.715 4 C 0.489 3.511 5 O -0.583 6.583 6 C 0.096 3.904 7 N -0.595 5.595 8 C 0.083 3.917 9 C 0.568 3.432 10 O -0.582 6.582 11 C -0.123 4.123 12 C -0.192 4.192 13 C -0.114 4.114 14 C -0.158 4.158 15 C 0.077 3.923 16 C -0.492 4.492 17 H 0.086 0.914 18 C 0.036 3.964 19 N -0.832 5.832 20 Si 0.982 3.018 21 H -0.254 1.254 22 H -0.269 1.269 23 H -0.270 1.270 24 C -0.182 4.182 25 H 0.082 0.918 26 H 0.077 0.923 27 H 0.069 0.931 28 H 0.043 0.957 29 H 0.056 0.944 30 H 0.419 0.581 31 H 0.159 0.841 32 H 0.117 0.883 33 H 0.083 0.917 34 H 0.086 0.914 35 H 0.057 0.943 36 H 0.097 0.903 37 H 0.117 0.883 38 H 0.104 0.896 39 H 0.287 0.713 40 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.744 0.704 4.847 18.407 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.014 4.014 3 N -0.370 5.370 4 C 0.275 3.725 5 O -0.462 6.462 6 C -0.030 4.030 7 N -0.325 5.325 8 C -0.058 4.058 9 C 0.360 3.640 10 O -0.464 6.464 11 C -0.126 4.126 12 C -0.212 4.212 13 C -0.132 4.132 14 C -0.177 4.177 15 C 0.074 3.926 16 C -0.522 4.522 17 H 0.104 0.896 18 C -0.178 4.178 19 N -0.458 5.458 20 Si 0.803 3.197 21 H -0.177 1.177 22 H -0.193 1.193 23 H -0.195 1.195 24 C -0.201 4.201 25 H 0.101 0.899 26 H 0.096 0.904 27 H 0.088 0.912 28 H 0.061 0.939 29 H 0.074 0.926 30 H 0.257 0.743 31 H 0.177 0.823 32 H 0.135 0.865 33 H 0.101 0.899 34 H 0.105 0.895 35 H 0.076 0.924 36 H 0.115 0.885 37 H 0.135 0.865 38 H 0.122 0.878 39 H 0.098 0.902 40 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -17.330 -0.166 4.374 17.874 hybrid contribution 0.653 0.147 0.043 0.670 sum -16.678 -0.019 4.417 17.253 Atomic orbital electron populations 1.21937 0.91196 1.04218 1.03578 1.21359 0.96637 0.82561 1.00886 1.45920 1.06199 1.09934 1.74972 1.21753 0.82989 0.92673 0.75086 1.90722 1.56931 1.47829 1.50752 1.21616 0.80174 0.93189 1.08032 1.47335 1.06046 1.72544 1.06601 1.22192 0.97155 1.02862 0.83633 1.18768 0.87884 0.74127 0.83228 1.90623 1.70747 1.52212 1.32809 1.19537 0.91211 1.03065 0.98773 1.20580 0.93810 1.06195 1.00603 1.20852 0.93742 0.99638 0.99001 1.21435 0.99391 1.01832 0.95069 1.17912 0.91599 0.91265 0.91783 1.19778 0.99815 1.12793 1.19785 0.89640 1.26715 0.98594 0.96460 0.96068 1.69865 1.17352 1.19934 1.38649 0.85157 0.77869 0.78870 0.77814 1.17748 1.19347 1.19508 1.21764 0.94620 1.04104 0.99652 0.89923 0.90413 0.91178 0.93896 0.92595 0.74292 0.82308 0.86515 0.89875 0.89492 0.92378 0.88505 0.86534 0.87801 0.90216 0.84974 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.40 10.03 71.98 0.72 -0.68 16 2 C 0.11 1.98 6.39 86.38 0.55 2.53 16 3 N -0.72 -13.20 5.56 -463.05 -2.57 -15.78 16 4 C 0.49 13.76 7.90 87.66 0.69 14.45 16 5 O -0.58 -23.41 16.43 -3.04 -0.05 -23.46 16 6 C 0.10 2.30 5.84 85.63 0.50 2.80 16 7 N -0.59 -20.21 2.36 -854.52 -2.02 -22.23 16 8 C 0.08 2.53 8.82 127.77 1.13 3.65 16 9 C 0.57 24.98 7.38 86.80 0.64 25.62 16 10 O -0.58 -28.15 16.40 -3.88 -0.06 -28.21 16 11 C -0.12 -5.87 5.23 -20.13 -0.11 -5.98 16 12 C -0.19 -9.48 9.61 22.70 0.22 -9.26 16 13 C -0.11 -5.56 10.01 22.18 0.22 -5.33 16 14 C -0.16 -8.25 8.65 22.77 0.20 -8.05 16 15 C 0.08 3.98 5.51 -21.32 -0.12 3.86 16 16 C -0.49 -24.88 9.04 23.47 0.21 -24.67 16 17 H 0.09 4.07 7.89 -2.91 -0.02 4.04 16 18 C 0.04 1.74 5.14 85.25 0.44 2.18 16 19 N -0.83 -42.44 11.18 21.82 0.24 -42.19 16 20 Si 0.98 36.58 29.59 68.60 2.03 38.61 16 21 H -0.25 -9.11 7.11 99.48 0.71 -8.40 16 22 H -0.27 -9.66 7.11 99.48 0.71 -8.95 16 23 H -0.27 -9.88 7.11 99.48 0.71 -9.17 16 24 C -0.18 -8.52 7.41 23.01 0.17 -8.35 16 25 H 0.08 0.65 8.14 -2.38 -0.02 0.63 16 26 H 0.08 0.50 8.14 -2.39 -0.02 0.49 16 27 H 0.07 0.57 8.14 -2.39 -0.02 0.55 16 28 H 0.04 0.98 8.14 -2.39 -0.02 0.96 16 29 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 30 H 0.42 4.20 8.47 -92.71 -0.79 3.41 16 31 H 0.16 2.08 8.07 -2.39 -0.02 2.06 16 32 H 0.12 2.73 7.50 -2.39 -0.02 2.71 16 33 H 0.08 2.17 6.65 -2.39 -0.02 2.16 16 34 H 0.09 2.13 8.07 -2.39 -0.02 2.11 16 35 H 0.06 2.20 6.08 -2.39 -0.01 2.18 16 36 H 0.10 4.70 7.96 -2.91 -0.02 4.68 16 37 H 0.12 5.01 8.06 -2.91 -0.02 4.98 16 38 H 0.10 5.60 6.46 -2.91 -0.02 5.58 16 39 H 0.29 13.31 8.30 -92.71 -0.77 12.54 16 40 H 0.13 5.41 5.12 -2.91 -0.01 5.40 16 Total: -1.00 -74.74 339.14 3.32 -71.42 By element: Atomic # 1 Polarization: 28.78 SS G_CDS: 0.28 Total: 29.06 kcal Atomic # 6 Polarization: -12.69 SS G_CDS: 5.47 Total: -7.22 kcal Atomic # 7 Polarization: -75.85 SS G_CDS: -4.35 Total: -80.20 kcal Atomic # 8 Polarization: -51.56 SS G_CDS: -0.11 Total: -51.67 kcal Atomic # 14 Polarization: 36.58 SS G_CDS: 2.03 Total: 38.61 kcal Total: -74.74 3.32 -71.42 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000080363212.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.824 kcal (2) G-P(sol) polarization free energy of solvation -74.739 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.915 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.318 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.422 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.598 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds