Wall clock time and date at job start Tue Mar 31 2020 03:02:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35896 * 116.99992 * 2 1 4 4 C 1.38577 * 119.88437 * 359.97438 * 3 2 1 5 5 C 1.38130 * 119.76572 * 180.02562 * 4 3 2 6 6 C 1.38077 * 119.92984 * 0.08120 * 5 4 3 7 7 C 1.38730 * 120.50104 * 359.97438 * 6 5 4 8 8 C 1.37792 * 119.75316 * 359.87912 * 7 6 5 9 9 C 1.50706 * 121.68307 * 180.48478 * 8 7 6 10 10 C 1.52897 * 109.96061 * 343.04534 * 9 8 7 11 11 N 1.47162 * 108.50063 * 50.38668 * 10 9 8 12 12 C 1.46896 * 111.00344 * 165.33714 * 11 10 9 13 13 C 1.50696 * 109.47452 * 189.04584 * 12 11 10 14 14 O 1.21292 * 119.99879 * 0.02562 * 13 12 11 15 15 N 1.34777 * 120.00137 * 180.02562 * 13 12 11 16 16 C 1.37105 * 119.99968 * 180.02562 * 15 13 12 17 17 H 1.08004 * 119.99700 * 359.71718 * 16 15 13 18 18 C 1.38942 * 119.99884 * 179.97438 * 16 15 13 19 19 N 1.31411 * 120.00042 * 359.97438 * 18 16 15 20 20 Si 1.86800 * 120.00016 * 179.97438 * 18 16 15 21 21 H 1.48511 * 109.47043 * 90.00180 * 20 18 16 22 22 H 1.48494 * 109.47357 * 209.99845 * 20 18 16 23 23 H 1.48494 * 109.47227 * 330.00363 * 20 18 16 24 24 C 1.46636 * 110.25877 * 288.76546 * 11 10 9 25 25 H 1.08999 * 109.47508 * 300.00256 * 1 2 3 26 26 H 1.09002 * 109.47303 * 60.00685 * 1 2 3 27 27 H 1.09002 * 109.46936 * 180.02562 * 1 2 3 28 28 H 1.08006 * 120.11939 * 359.97438 * 4 3 2 29 29 H 1.08003 * 120.03039 * 180.02562 * 5 4 3 30 30 H 1.08001 * 119.74951 * 179.97438 * 6 5 4 31 31 H 1.09001 * 109.39118 * 103.19462 * 9 8 7 32 32 H 1.09000 * 109.39026 * 222.99978 * 9 8 7 33 33 H 1.08997 * 109.63170 * 290.69048 * 10 9 8 34 34 H 1.08997 * 109.63650 * 170.09025 * 10 9 8 35 35 H 1.09000 * 109.47017 * 69.04622 * 12 11 10 36 36 H 1.08996 * 109.47227 * 309.04942 * 12 11 10 37 37 H 0.96999 * 120.00047 * 359.97438 * 15 13 12 38 38 H 0.97005 * 120.00019 * 180.02562 * 19 18 16 39 39 H 1.09001 * 109.27027 * 172.79615 * 24 11 10 40 40 H 1.08997 * 109.26903 * 292.27185 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 1.2889 2.3715 -0.0005 5 6 1.9185 3.6010 -0.0011 6 6 3.2976 3.6687 -0.0028 7 6 4.0595 2.5093 -0.0034 8 6 3.4354 1.2809 0.0002 9 6 4.2202 -0.0057 0.0105 10 6 5.6674 0.2624 -0.4034 11 7 6.1853 1.3778 0.4049 12 6 7.6490 1.4605 0.3116 13 6 8.1607 2.4612 1.3154 14 8 7.3826 3.0476 2.0379 15 7 9.4828 2.7048 1.4104 16 6 9.9484 3.6149 2.3240 17 1 9.2551 4.1400 2.9644 18 6 11.3115 3.8655 2.4223 19 7 12.1545 3.2299 1.6399 20 14 11.9457 5.1061 3.6665 21 1 12.2322 4.4171 4.9506 22 1 13.1904 5.7313 3.1519 23 1 10.9188 6.1559 3.8865 24 6 5.5603 2.6380 -0.0091 25 1 -0.3634 0.5139 0.8899 26 1 -0.3634 0.5137 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 0.2103 2.3151 -0.0014 29 1 1.3327 4.5083 -0.0011 30 1 3.7869 4.6315 -0.0036 31 1 4.2037 -0.4316 1.0137 32 1 3.7699 -0.7099 -0.6891 33 1 5.7029 0.5285 -1.4598 34 1 6.2700 -0.6285 -0.2267 35 1 7.9318 1.7761 -0.6926 36 1 8.0822 0.4824 0.5205 37 1 10.1051 2.2356 0.8329 38 1 13.1062 3.4046 1.7087 39 1 5.8562 3.4295 0.6794 40 1 5.8957 2.8925 -1.0145 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000182709433.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:02:17 Heat of formation + Delta-G solvation = -62.008515 kcal Electronic energy + Delta-G solvation = -22749.318213 eV Core-core repulsion = 19335.358929 eV Total energy + Delta-G solvation = -3413.959284 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.55391 -40.34694 -39.09721 -37.42679 -35.90577 -33.79583 -33.25827 -32.24910 -30.20407 -28.80480 -28.02925 -26.55616 -25.01815 -23.93608 -22.72540 -21.06380 -20.50178 -19.85024 -18.71606 -17.75950 -17.46145 -16.84932 -16.63403 -16.46571 -16.41586 -16.07330 -15.61286 -15.43869 -15.23061 -14.59996 -14.43363 -14.22228 -14.05600 -13.54432 -13.50425 -13.17336 -12.98814 -12.96016 -12.71586 -12.50300 -12.40802 -12.31115 -12.11990 -12.05876 -11.83873 -11.45627 -11.38579 -10.27669 -9.99214 -9.63458 -9.24511 -9.00466 -8.45302 -5.93669 0.35446 0.47791 1.38408 1.41967 1.54657 2.06650 2.29021 2.38729 2.71006 2.79208 3.21536 3.36570 3.73028 3.77923 4.07578 4.09409 4.24271 4.29865 4.35827 4.38651 4.42118 4.43646 4.51706 4.53346 4.57084 4.63369 4.75425 4.76897 4.82040 4.97210 5.05440 5.26328 5.37594 5.42361 5.47565 5.63401 5.78351 5.94310 6.08506 6.17470 6.48903 6.62689 7.14698 7.58170 8.14432 8.72215 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.032513 B = 0.003243 C = 0.003056 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 860.986451 B = 8631.608000 C = 9160.440273 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.329 6.329 3 C 0.117 3.883 4 C -0.213 4.213 5 C -0.083 4.083 6 C -0.169 4.169 7 C -0.049 4.049 8 C -0.123 4.123 9 C -0.057 4.057 10 C 0.052 3.948 11 N -0.530 5.530 12 C 0.056 3.944 13 C 0.441 3.559 14 O -0.615 6.615 15 N -0.574 5.574 16 C -0.331 4.331 17 H 0.078 0.922 18 C -0.013 4.013 19 N -0.921 5.921 20 Si 0.992 3.008 21 H -0.272 1.272 22 H -0.270 1.270 23 H -0.273 1.273 24 C 0.093 3.907 25 H 0.061 0.939 26 H 0.066 0.934 27 H 0.119 0.881 28 H 0.155 0.845 29 H 0.152 0.848 30 H 0.124 0.876 31 H 0.070 0.930 32 H 0.094 0.906 33 H 0.046 0.954 34 H 0.099 0.901 35 H 0.070 0.930 36 H 0.116 0.884 37 H 0.396 0.604 38 H 0.277 0.723 39 H 0.080 0.920 40 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.001 -6.450 -8.332 22.607 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.243 6.243 3 C 0.072 3.928 4 C -0.232 4.232 5 C -0.100 4.100 6 C -0.188 4.188 7 C -0.050 4.050 8 C -0.124 4.124 9 C -0.094 4.094 10 C -0.075 4.075 11 N -0.255 5.255 12 C -0.075 4.075 13 C 0.229 3.771 14 O -0.501 6.501 15 N -0.211 5.211 16 C -0.460 4.460 17 H 0.096 0.904 18 C -0.213 4.213 19 N -0.562 5.562 20 Si 0.815 3.185 21 H -0.197 1.197 22 H -0.195 1.195 23 H -0.198 1.198 24 C -0.034 4.034 25 H 0.080 0.920 26 H 0.085 0.915 27 H 0.137 0.863 28 H 0.173 0.827 29 H 0.170 0.830 30 H 0.142 0.858 31 H 0.089 0.911 32 H 0.112 0.888 33 H 0.064 0.936 34 H 0.118 0.882 35 H 0.088 0.912 36 H 0.134 0.866 37 H 0.230 0.770 38 H 0.087 0.913 39 H 0.098 0.902 40 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -20.349 -6.348 -7.379 22.557 hybrid contribution 0.976 0.841 -0.365 1.339 sum -19.372 -5.508 -7.745 21.578 Atomic orbital electron populations 1.23339 0.76558 1.05516 1.02161 1.86028 1.23273 1.26404 1.88592 1.18996 0.91433 0.85184 0.97234 1.21454 1.01106 0.91751 1.08851 1.21122 0.93677 0.98330 0.96910 1.21162 0.94876 0.97785 1.04940 1.19532 0.94656 0.92919 0.97888 1.19092 0.91164 0.95697 1.06408 1.20282 0.92951 0.93719 1.02443 1.22315 0.96111 0.94176 0.94927 1.61831 1.03779 1.04335 1.55539 1.21811 0.88675 0.99899 0.97079 1.20763 0.82345 0.86542 0.87488 1.90467 1.56350 1.54966 1.48278 1.41924 1.06112 1.38202 1.34895 1.19646 0.92000 1.18737 1.15663 0.90395 1.26014 0.95410 1.00027 0.99810 1.69673 1.03800 1.43199 1.39554 0.84947 0.77699 0.77906 0.77905 1.19712 1.19507 1.19803 1.21003 0.90290 0.93353 0.98762 0.92043 0.91546 0.86297 0.82747 0.83047 0.85806 0.91124 0.88766 0.93551 0.88224 0.91173 0.86571 0.76981 0.91329 0.90192 0.93547 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.23 9.81 113.37 1.11 1.34 16 2 O -0.33 -7.25 9.63 -92.38 -0.89 -8.14 16 3 C 0.12 3.00 6.65 22.56 0.15 3.15 16 4 C -0.21 -4.62 9.03 22.33 0.20 -4.42 16 5 C -0.08 -1.89 10.04 22.21 0.22 -1.66 16 6 C -0.17 -4.84 9.64 22.35 0.22 -4.62 16 7 C -0.05 -1.60 5.79 -19.87 -0.12 -1.71 16 8 C -0.12 -3.64 5.78 -19.76 -0.11 -3.76 16 9 C -0.06 -1.50 5.54 29.82 0.17 -1.34 16 10 C 0.05 1.38 5.57 86.22 0.48 1.86 16 11 N -0.53 -18.63 4.42 -905.76 -4.01 -22.64 16 12 C 0.06 2.02 5.43 85.56 0.46 2.48 16 13 C 0.44 21.46 7.53 87.66 0.66 22.12 16 14 O -0.61 -34.73 13.87 -3.07 -0.04 -34.77 16 15 N -0.57 -29.84 5.29 -306.99 -1.62 -31.47 16 16 C -0.33 -19.02 9.68 84.04 0.81 -18.20 16 17 H 0.08 4.78 7.16 -2.91 -0.02 4.76 16 18 C -0.01 -0.70 5.50 84.92 0.47 -0.24 16 19 N -0.92 -50.14 13.05 21.66 0.28 -49.86 16 20 Si 0.99 43.46 29.55 68.60 2.03 45.49 16 21 H -0.27 -11.58 7.11 99.48 0.71 -10.88 16 22 H -0.27 -11.18 7.11 99.48 0.71 -10.47 16 23 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 24 C 0.09 3.36 4.83 85.59 0.41 3.78 16 25 H 0.06 0.67 7.65 -2.39 -0.02 0.66 16 26 H 0.07 0.65 7.65 -2.39 -0.02 0.63 16 27 H 0.12 0.94 8.14 -2.39 -0.02 0.92 16 28 H 0.16 2.29 6.28 -2.91 -0.02 2.27 16 29 H 0.15 2.48 8.06 -2.91 -0.02 2.45 16 30 H 0.12 3.39 8.06 -2.91 -0.02 3.36 16 31 H 0.07 2.00 8.14 -2.39 -0.02 1.98 16 32 H 0.09 2.11 7.85 -2.39 -0.02 2.09 16 33 H 0.05 1.13 8.05 -2.39 -0.02 1.12 16 34 H 0.10 2.22 7.87 -2.39 -0.02 2.20 16 35 H 0.07 2.23 8.07 -2.39 -0.02 2.21 16 36 H 0.12 3.59 7.91 -2.39 -0.02 3.57 16 37 H 0.40 19.51 7.90 -92.71 -0.73 18.77 16 38 H 0.28 14.12 8.31 -92.70 -0.77 13.35 16 39 H 0.08 3.51 5.92 -2.39 -0.01 3.49 16 40 H 0.05 1.55 8.08 -2.39 -0.02 1.53 16 Total: -1.00 -71.16 329.08 1.21 -69.94 By element: Atomic # 1 Polarization: 32.35 SS G_CDS: 0.33 Total: 32.68 kcal Atomic # 6 Polarization: -6.37 SS G_CDS: 5.14 Total: -1.23 kcal Atomic # 7 Polarization: -98.62 SS G_CDS: -5.35 Total: -103.97 kcal Atomic # 8 Polarization: -41.97 SS G_CDS: -0.93 Total: -42.91 kcal Atomic # 14 Polarization: 43.46 SS G_CDS: 2.03 Total: 45.49 kcal Total: -71.16 1.21 -69.94 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000182709433.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.933 kcal (2) G-P(sol) polarization free energy of solvation -71.156 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.223 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.215 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.941 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.009 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds