Wall clock time and date at job start Tue Mar 31 2020 02:50:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09004 * 109.47040 * 2 1 4 4 N 1.46890 * 109.47477 * 119.99969 * 2 1 3 5 5 C 1.46896 * 111.00256 * 274.99682 * 4 2 1 6 6 C 1.50699 * 109.47342 * 179.97438 * 5 4 2 7 7 O 1.21295 * 120.00195 * 0.02562 * 6 5 4 8 8 N 1.34780 * 120.00402 * 180.02562 * 6 5 4 9 9 C 1.37098 * 120.00401 * 180.02562 * 8 6 5 10 10 H 1.08002 * 119.99558 * 0.02562 * 9 8 6 11 11 C 1.38942 * 120.00029 * 179.97438 * 9 8 6 12 12 N 1.31410 * 120.00208 * 0.02562 * 11 9 8 13 13 Si 1.86798 * 120.00093 * 179.97438 * 11 9 8 14 14 H 1.48493 * 109.47462 * 89.99831 * 13 11 9 15 15 H 1.48504 * 109.47237 * 210.00219 * 13 11 9 16 16 H 1.48504 * 109.47311 * 330.00101 * 13 11 9 17 17 C 1.53002 * 109.46976 * 240.00408 * 2 1 3 18 18 H 1.09002 * 110.83390 * 185.69749 * 17 2 1 19 19 C 1.54712 * 110.93872 * 309.41732 * 17 2 1 20 20 O 1.43762 * 102.79660 * 92.83493 * 19 17 2 21 21 C 1.36133 * 109.28770 * 27.54159 * 20 19 17 22 22 C 1.39290 * 129.87501 * 161.45730 * 21 20 19 23 23 C 1.37936 * 120.24055 * 179.54878 * 22 21 20 24 24 C 1.38279 * 120.35034 * 0.06604 * 23 22 21 25 25 C 1.38348 * 119.76910 * 0.15446 * 24 23 22 26 26 C 1.37682 * 119.99844 * 359.93352 * 25 24 23 27 27 H 1.08995 * 109.47809 * 60.00074 * 1 2 3 28 28 H 1.09000 * 109.47103 * 180.02562 * 1 2 3 29 29 H 1.09006 * 109.46764 * 299.99676 * 1 2 3 30 30 H 1.00901 * 110.99815 * 38.95583 * 4 2 1 31 31 H 1.08999 * 109.47573 * 300.00264 * 5 4 2 32 32 H 1.09002 * 109.46939 * 60.00121 * 5 4 2 33 33 H 0.97000 * 119.99836 * 359.97438 * 8 6 5 34 34 H 0.96999 * 120.00323 * 179.97438 * 12 11 9 35 35 H 1.09004 * 110.74551 * 211.15254 * 19 17 2 36 36 H 1.08998 * 110.75154 * 334.31917 * 19 17 2 37 37 H 1.08003 * 119.88142 * 359.57535 * 22 21 20 38 38 H 1.08002 * 119.81607 * 180.02562 * 23 22 21 39 39 H 1.08003 * 120.11654 * 180.16874 * 24 23 22 40 40 H 1.08002 * 120.01187 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0197 -0.6924 1.1993 5 6 2.0826 0.2226 2.3468 6 6 2.5876 -0.5218 3.5559 7 8 2.8680 -1.6988 3.4701 8 7 2.7276 0.1202 4.7326 9 6 3.1875 -0.5569 5.8325 10 1 3.4379 -1.6047 5.7558 11 6 3.3324 0.1051 7.0454 12 7 3.0282 1.3801 7.1386 13 14 3.9583 -0.8175 8.5442 14 1 5.4393 -0.7245 8.6000 15 1 3.3779 -0.2180 9.7726 16 1 3.5552 -2.2438 8.4515 17 6 2.0400 -0.7212 -1.2493 18 1 3.1249 -0.8226 -1.2227 19 6 1.3592 -2.1014 -1.4076 20 8 0.2357 -1.8071 -2.2548 21 6 0.5292 -0.7290 -3.0325 22 6 -0.0680 -0.2894 -4.2116 23 6 0.3897 0.8505 -4.8390 24 6 1.4454 1.5662 -4.3047 25 6 2.0470 1.1337 -3.1364 26 6 1.5933 -0.0048 -2.5090 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8901 30 1 1.4496 -1.4979 1.4099 31 1 2.7590 1.0462 2.1181 32 1 1.0872 0.6163 2.5525 33 1 2.5038 1.0615 4.8012 34 1 3.1289 1.8422 7.9854 35 1 2.0316 -2.8105 -1.8906 36 1 1.0285 -2.4820 -0.4412 37 1 -0.8927 -0.8429 -4.6359 38 1 -0.0786 1.1854 -5.7528 39 1 1.7990 2.4597 -4.7977 40 1 2.8716 1.6899 -2.7154 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000185576173.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:50:43 Heat of formation + Delta-G solvation = -39.552350 kcal Electronic energy + Delta-G solvation = -22528.755718 eV Core-core repulsion = 19115.770206 eV Total energy + Delta-G solvation = -3412.985512 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.53248 -38.39515 -37.60160 -36.44903 -33.95189 -32.67798 -31.23250 -30.40077 -29.83164 -28.52345 -26.37620 -24.50703 -23.83225 -22.72959 -21.95762 -19.97269 -19.28733 -17.93739 -17.31837 -16.79579 -16.58404 -15.95371 -15.65390 -15.23361 -14.61395 -14.52319 -14.17809 -13.92946 -13.79440 -13.52492 -13.26061 -12.88459 -12.78362 -12.57308 -12.17554 -12.10691 -11.79500 -11.70517 -11.55358 -11.43721 -11.05169 -10.95177 -10.86207 -10.62674 -10.40014 -10.22483 -9.51758 -9.09413 -8.52595 -8.26583 -8.05563 -7.96579 -6.42450 -3.83354 1.11566 1.21739 3.17402 3.17527 3.26089 3.31846 3.53411 3.89788 4.02043 4.22470 4.43430 4.50184 4.74972 4.84244 4.86214 5.00018 5.15738 5.20860 5.21847 5.25292 5.29260 5.37252 5.41678 5.55345 5.72301 5.79592 5.84037 5.90011 5.93820 6.03813 6.14536 6.17789 6.26609 6.28284 6.32818 6.45441 7.05778 7.18034 7.54504 7.61239 8.05432 8.60299 9.17049 9.53452 10.04697 10.75312 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.040854 B = 0.002801 C = 0.002714 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 685.194601 B = 9994.983226 C =10314.043075 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.097 3.903 3 H 0.083 0.917 4 N -0.664 5.664 5 C 0.051 3.949 6 C 0.441 3.559 7 O -0.584 6.584 8 N -0.564 5.564 9 C -0.299 4.299 10 H 0.103 0.897 11 C 0.022 3.978 12 N -0.902 5.902 13 Si 0.930 3.070 14 H -0.278 1.278 15 H -0.284 1.284 16 H -0.270 1.270 17 C -0.064 4.064 18 H 0.106 0.894 19 C 0.057 3.943 20 O -0.304 6.304 21 C 0.112 3.888 22 C -0.146 4.146 23 C -0.088 4.088 24 C -0.153 4.153 25 C -0.068 4.068 26 C -0.162 4.162 27 H 0.059 0.941 28 H 0.063 0.937 29 H 0.056 0.944 30 H 0.349 0.651 31 H 0.086 0.914 32 H 0.045 0.955 33 H 0.392 0.608 34 H 0.272 0.728 35 H 0.078 0.922 36 H 0.110 0.890 37 H 0.125 0.875 38 H 0.128 0.872 39 H 0.125 0.875 40 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.378 1.783 -21.256 21.998 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C -0.014 4.014 3 H 0.101 0.899 4 N -0.295 5.295 5 C -0.081 4.081 6 C 0.226 3.774 7 O -0.468 6.468 8 N -0.200 5.200 9 C -0.429 4.429 10 H 0.121 0.879 11 C -0.180 4.180 12 N -0.543 5.543 13 Si 0.757 3.243 14 H -0.204 1.204 15 H -0.209 1.209 16 H -0.194 1.194 17 C -0.083 4.083 18 H 0.124 0.876 19 C -0.018 4.018 20 O -0.218 6.218 21 C 0.067 3.933 22 C -0.164 4.164 23 C -0.106 4.106 24 C -0.171 4.171 25 C -0.086 4.086 26 C -0.163 4.163 27 H 0.078 0.922 28 H 0.082 0.918 29 H 0.075 0.925 30 H 0.169 0.831 31 H 0.104 0.896 32 H 0.063 0.937 33 H 0.225 0.775 34 H 0.081 0.919 35 H 0.096 0.904 36 H 0.128 0.872 37 H 0.143 0.857 38 H 0.146 0.854 39 H 0.143 0.857 40 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -4.711 1.038 -21.250 21.790 hybrid contribution -0.623 0.441 1.165 1.393 sum -5.334 1.479 -20.085 20.834 Atomic orbital electron populations 1.22568 0.96956 1.02727 1.02087 1.21423 0.92758 0.97797 0.89392 0.89911 1.60150 1.57569 1.09228 1.02601 1.21692 1.00016 0.95667 0.90738 1.19803 0.85166 0.88234 0.84168 1.90520 1.55371 1.16275 1.84643 1.41867 1.57741 1.12472 1.07939 1.19701 1.39962 0.96462 0.86754 0.87916 1.25263 0.97640 0.95783 0.99267 1.69610 1.48620 1.08891 1.27214 0.85856 0.78824 0.79483 0.80117 1.20377 1.20934 1.19417 1.21393 1.02343 0.93244 0.91361 0.87606 1.23880 0.86351 0.96743 0.94819 1.86825 1.39056 1.45332 1.50567 1.19622 0.94364 0.87997 0.91358 1.20247 1.03248 0.99278 0.93676 1.20841 0.96365 0.93997 0.99371 1.21013 0.97931 1.01048 0.97156 1.20349 0.99125 0.94453 0.94637 1.20787 0.99904 0.98119 0.97539 0.92162 0.91843 0.92512 0.83109 0.89570 0.93741 0.77461 0.91862 0.90426 0.87209 0.85722 0.85441 0.85665 0.85761 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.25 7.96 37.16 0.30 -1.95 16 2 C 0.10 1.21 2.43 -67.72 -0.16 1.05 16 3 H 0.08 1.03 7.80 -51.93 -0.40 0.62 16 4 N -0.66 -10.36 5.74 -108.00 -0.62 -10.98 16 5 C 0.05 0.90 5.97 -4.98 -0.03 0.87 16 6 C 0.44 10.33 7.82 -10.98 -0.09 10.24 16 7 O -0.58 -15.70 15.78 5.54 0.09 -15.61 16 8 N -0.56 -14.27 5.29 -10.96 -0.06 -14.32 16 9 C -0.30 -8.35 9.68 -14.94 -0.14 -8.49 16 10 H 0.10 3.00 7.16 -52.49 -0.38 2.63 16 11 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 12 N -0.90 -24.56 13.05 55.50 0.72 -23.84 16 13 Si 0.93 21.06 29.55 -169.99 -5.02 16.03 16 14 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 15 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 16 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 17 C -0.06 -0.75 3.25 -90.40 -0.29 -1.04 16 18 H 0.11 1.25 8.14 -51.93 -0.42 0.82 16 19 C 0.06 0.64 6.71 38.06 0.26 0.90 16 20 O -0.30 -3.79 10.06 -20.16 -0.20 -3.99 16 21 C 0.11 1.32 6.12 -38.93 -0.24 1.08 16 22 C -0.15 -1.47 10.06 -39.30 -0.40 -1.87 16 23 C -0.09 -0.75 10.02 -39.68 -0.40 -1.15 16 24 C -0.15 -1.33 10.07 -39.53 -0.40 -1.73 16 25 C -0.07 -0.67 10.03 -39.74 -0.40 -1.07 16 26 C -0.16 -1.83 4.91 -104.09 -0.51 -2.34 16 27 H 0.06 0.73 6.82 -51.93 -0.35 0.38 16 28 H 0.06 0.78 6.29 -51.93 -0.33 0.45 16 29 H 0.06 0.70 7.45 -51.93 -0.39 0.31 16 30 H 0.35 5.63 7.31 -39.29 -0.29 5.34 16 31 H 0.09 1.39 8.06 -51.93 -0.42 0.97 16 32 H 0.04 0.71 7.44 -51.93 -0.39 0.32 16 33 H 0.39 9.49 7.90 -40.82 -0.32 9.17 16 34 H 0.27 6.99 8.31 -40.82 -0.34 6.65 16 35 H 0.08 0.79 8.14 -51.93 -0.42 0.36 16 36 H 0.11 1.23 6.32 -51.93 -0.33 0.90 16 37 H 0.12 1.07 8.06 -52.48 -0.42 0.65 16 38 H 0.13 0.76 8.06 -52.49 -0.42 0.33 16 39 H 0.13 0.80 8.06 -52.48 -0.42 0.38 16 40 H 0.12 1.06 8.06 -52.49 -0.42 0.64 16 LS Contribution 330.66 15.07 4.98 4.98 Total: -1.00 -31.19 330.66 -7.97 -39.16 By element: Atomic # 1 Polarization: 18.83 SS G_CDS: -5.26 Total: 13.56 kcal Atomic # 6 Polarization: -2.39 SS G_CDS: -2.60 Total: -5.00 kcal Atomic # 7 Polarization: -49.18 SS G_CDS: 0.05 Total: -49.14 kcal Atomic # 8 Polarization: -19.49 SS G_CDS: -0.12 Total: -19.61 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -5.02 Total: 16.03 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -31.19 -7.97 -39.16 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000185576173.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.393 kcal (2) G-P(sol) polarization free energy of solvation -31.186 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.578 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.974 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.160 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.552 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds