Wall clock time and date at job start Tue Mar 31 2020 02:50:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09004 * 109.47040 * 2 1 4 4 N 1.46890 * 109.47477 * 119.99969 * 2 1 3 5 5 C 1.46896 * 111.00256 * 274.99682 * 4 2 1 6 6 C 1.50699 * 109.47342 * 179.97438 * 5 4 2 7 7 O 1.21295 * 120.00195 * 0.02562 * 6 5 4 8 8 N 1.34780 * 120.00402 * 180.02562 * 6 5 4 9 9 C 1.37098 * 120.00401 * 180.02562 * 8 6 5 10 10 H 1.08002 * 119.99558 * 0.02562 * 9 8 6 11 11 C 1.38942 * 120.00029 * 179.97438 * 9 8 6 12 12 N 1.31410 * 120.00208 * 0.02562 * 11 9 8 13 13 Si 1.86798 * 120.00093 * 179.97438 * 11 9 8 14 14 H 1.48493 * 109.47462 * 89.99831 * 13 11 9 15 15 H 1.48504 * 109.47237 * 210.00219 * 13 11 9 16 16 H 1.48504 * 109.47311 * 330.00101 * 13 11 9 17 17 C 1.53002 * 109.46976 * 240.00408 * 2 1 3 18 18 H 1.09002 * 110.83390 * 185.69749 * 17 2 1 19 19 C 1.54712 * 110.93872 * 309.41732 * 17 2 1 20 20 O 1.43762 * 102.79660 * 92.83493 * 19 17 2 21 21 C 1.36133 * 109.28770 * 27.54159 * 20 19 17 22 22 C 1.39290 * 129.87501 * 161.45730 * 21 20 19 23 23 C 1.37936 * 120.24055 * 179.54878 * 22 21 20 24 24 C 1.38279 * 120.35034 * 0.06604 * 23 22 21 25 25 C 1.38348 * 119.76910 * 0.15446 * 24 23 22 26 26 C 1.37682 * 119.99844 * 359.93352 * 25 24 23 27 27 H 1.08995 * 109.47809 * 60.00074 * 1 2 3 28 28 H 1.09000 * 109.47103 * 180.02562 * 1 2 3 29 29 H 1.09006 * 109.46764 * 299.99676 * 1 2 3 30 30 H 1.00901 * 110.99815 * 38.95583 * 4 2 1 31 31 H 1.08999 * 109.47573 * 300.00264 * 5 4 2 32 32 H 1.09002 * 109.46939 * 60.00121 * 5 4 2 33 33 H 0.97000 * 119.99836 * 359.97438 * 8 6 5 34 34 H 0.96999 * 120.00323 * 179.97438 * 12 11 9 35 35 H 1.09004 * 110.74551 * 211.15254 * 19 17 2 36 36 H 1.08998 * 110.75154 * 334.31917 * 19 17 2 37 37 H 1.08003 * 119.88142 * 359.57535 * 22 21 20 38 38 H 1.08002 * 119.81607 * 180.02562 * 23 22 21 39 39 H 1.08003 * 120.11654 * 180.16874 * 24 23 22 40 40 H 1.08002 * 120.01187 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0197 -0.6924 1.1993 5 6 2.0826 0.2226 2.3468 6 6 2.5876 -0.5218 3.5559 7 8 2.8680 -1.6988 3.4701 8 7 2.7276 0.1202 4.7326 9 6 3.1875 -0.5569 5.8325 10 1 3.4379 -1.6047 5.7558 11 6 3.3324 0.1051 7.0454 12 7 3.0282 1.3801 7.1386 13 14 3.9583 -0.8175 8.5442 14 1 5.4393 -0.7245 8.6000 15 1 3.3779 -0.2180 9.7726 16 1 3.5552 -2.2438 8.4515 17 6 2.0400 -0.7212 -1.2493 18 1 3.1249 -0.8226 -1.2227 19 6 1.3592 -2.1014 -1.4076 20 8 0.2357 -1.8071 -2.2548 21 6 0.5292 -0.7290 -3.0325 22 6 -0.0680 -0.2894 -4.2116 23 6 0.3897 0.8505 -4.8390 24 6 1.4454 1.5662 -4.3047 25 6 2.0470 1.1337 -3.1364 26 6 1.5933 -0.0048 -2.5090 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8901 30 1 1.4496 -1.4979 1.4099 31 1 2.7590 1.0462 2.1181 32 1 1.0872 0.6163 2.5525 33 1 2.5038 1.0615 4.8012 34 1 3.1289 1.8422 7.9854 35 1 2.0316 -2.8105 -1.8906 36 1 1.0285 -2.4820 -0.4412 37 1 -0.8927 -0.8429 -4.6359 38 1 -0.0786 1.1854 -5.7528 39 1 1.7990 2.4597 -4.7977 40 1 2.8716 1.6899 -2.7154 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000185576173.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:50:42 Heat of formation + Delta-G solvation = -60.715173 kcal Electronic energy + Delta-G solvation = -22529.673407 eV Core-core repulsion = 19115.770206 eV Total energy + Delta-G solvation = -3413.903201 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.37585 -40.17808 -38.42655 -37.64038 -35.94326 -33.77111 -33.22241 -31.28872 -30.69795 -29.44711 -27.99155 -25.99041 -25.01916 -23.55378 -22.75386 -21.21180 -20.83456 -19.93186 -18.30805 -17.67440 -17.56874 -17.43597 -16.68818 -16.44368 -16.39033 -15.94634 -15.44528 -15.26500 -14.97267 -14.49165 -14.43562 -14.03202 -13.80834 -13.67554 -13.47382 -13.39563 -13.19154 -12.95524 -12.76868 -12.64835 -12.46410 -12.41137 -12.12380 -11.84823 -11.67827 -11.52860 -11.50352 -10.37608 -10.02165 -9.83169 -9.40399 -9.02232 -8.47122 -5.95909 0.37753 0.47142 1.37845 1.41726 1.54373 2.04516 2.28370 2.36670 2.71826 2.92999 3.20199 3.43208 3.53973 3.64953 3.89565 3.99426 4.12628 4.24444 4.28501 4.31021 4.41983 4.44036 4.47236 4.57229 4.59183 4.62324 4.74233 4.84767 4.90746 5.01549 5.14353 5.19675 5.40633 5.44445 5.54365 5.60775 5.73666 5.86187 6.07101 6.27313 6.35088 6.59343 7.12044 7.55595 8.10601 8.70342 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.040854 B = 0.002801 C = 0.002714 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 685.194601 B = 9994.983226 C =10314.043075 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.103 3.897 3 H 0.089 0.911 4 N -0.671 5.671 5 C 0.066 3.934 6 C 0.439 3.561 7 O -0.622 6.622 8 N -0.573 5.573 9 C -0.333 4.333 10 H 0.079 0.921 11 C -0.013 4.013 12 N -0.921 5.921 13 Si 0.993 3.007 14 H -0.271 1.271 15 H -0.271 1.271 16 H -0.273 1.273 17 C -0.060 4.060 18 H 0.102 0.898 19 C 0.055 3.945 20 O -0.319 6.319 21 C 0.087 3.913 22 C -0.156 4.156 23 C -0.085 4.085 24 C -0.151 4.151 25 C -0.077 4.077 26 C -0.174 4.174 27 H 0.061 0.939 28 H 0.058 0.942 29 H 0.055 0.945 30 H 0.344 0.656 31 H 0.105 0.895 32 H 0.065 0.935 33 H 0.396 0.604 34 H 0.278 0.722 35 H 0.085 0.915 36 H 0.106 0.894 37 H 0.134 0.866 38 H 0.157 0.843 39 H 0.152 0.848 40 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.516 3.045 -22.364 23.235 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.006 4.006 3 H 0.107 0.893 4 N -0.303 5.303 5 C -0.067 4.067 6 C 0.226 3.774 7 O -0.508 6.508 8 N -0.211 5.211 9 C -0.463 4.463 10 H 0.097 0.903 11 C -0.213 4.213 12 N -0.562 5.562 13 Si 0.816 3.184 14 H -0.196 1.196 15 H -0.195 1.195 16 H -0.197 1.197 17 C -0.079 4.079 18 H 0.120 0.880 19 C -0.019 4.019 20 O -0.233 6.233 21 C 0.042 3.958 22 C -0.174 4.174 23 C -0.102 4.102 24 C -0.169 4.169 25 C -0.095 4.095 26 C -0.175 4.175 27 H 0.080 0.920 28 H 0.077 0.923 29 H 0.074 0.926 30 H 0.164 0.836 31 H 0.123 0.877 32 H 0.083 0.917 33 H 0.230 0.770 34 H 0.087 0.913 35 H 0.104 0.896 36 H 0.124 0.876 37 H 0.152 0.848 38 H 0.175 0.825 39 H 0.169 0.831 40 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -4.858 2.331 -22.380 23.020 hybrid contribution -0.600 0.075 1.387 1.513 sum -5.458 2.406 -20.993 21.824 Atomic orbital electron populations 1.22458 0.96513 1.02416 1.01994 1.21425 0.92983 0.97862 0.88366 0.89291 1.60155 1.58234 1.09133 1.02810 1.21554 1.01090 0.95387 0.88622 1.20837 0.83434 0.88005 0.85096 1.90490 1.56636 1.18264 1.85456 1.41936 1.58303 1.12627 1.08196 1.19666 1.42126 0.95983 0.88514 0.90285 1.26038 0.97222 0.96622 1.01403 1.69669 1.48592 1.09730 1.28187 0.84932 0.78505 0.78036 0.76903 1.19624 1.19547 1.19750 1.21292 1.01964 0.93410 0.91272 0.88029 1.23896 0.86395 0.96914 0.94733 1.86790 1.39517 1.45965 1.51029 1.19905 0.95378 0.88233 0.92282 1.20563 1.03566 0.99994 0.93323 1.21229 0.95985 0.93027 0.99987 1.21384 0.97384 1.01611 0.96493 1.20625 0.99594 0.94137 0.95172 1.20799 1.00295 0.98902 0.97517 0.92042 0.92327 0.92605 0.83626 0.87664 0.91728 0.76983 0.91288 0.89650 0.87628 0.84773 0.82516 0.83057 0.84617 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.11 7.96 71.98 0.57 -3.54 16 2 C 0.10 2.50 2.43 44.92 0.11 2.60 16 3 H 0.09 2.05 7.80 -2.38 -0.02 2.04 16 4 N -0.67 -20.62 5.74 -495.60 -2.84 -23.46 16 5 C 0.07 2.23 5.97 85.56 0.51 2.74 16 6 C 0.44 20.75 7.82 87.66 0.69 21.44 16 7 O -0.62 -34.21 15.78 -3.08 -0.05 -34.26 16 8 N -0.57 -29.41 5.29 -306.98 -1.62 -31.03 16 9 C -0.33 -18.95 9.68 84.04 0.81 -18.14 16 10 H 0.08 4.79 7.16 -2.91 -0.02 4.77 16 11 C -0.01 -0.70 5.50 84.92 0.47 -0.24 16 12 N -0.92 -49.74 13.05 21.66 0.28 -49.46 16 13 Si 0.99 42.96 29.55 68.60 2.03 44.99 16 14 H -0.27 -11.38 7.11 99.48 0.71 -10.67 16 15 H -0.27 -11.08 7.11 99.48 0.71 -10.38 16 16 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 17 C -0.06 -1.37 3.25 -10.65 -0.03 -1.40 16 18 H 0.10 2.36 8.14 -2.39 -0.02 2.34 16 19 C 0.06 1.26 6.71 72.57 0.49 1.74 16 20 O -0.32 -7.94 10.06 -95.07 -0.96 -8.89 16 21 C 0.09 1.98 6.12 22.69 0.14 2.12 16 22 C -0.16 -2.90 10.06 22.45 0.23 -2.68 16 23 C -0.08 -1.21 10.02 22.21 0.22 -0.99 16 24 C -0.15 -2.18 10.07 22.31 0.22 -1.95 16 25 C -0.08 -1.38 10.03 22.16 0.22 -1.16 16 26 C -0.17 -3.74 4.91 -19.52 -0.10 -3.83 16 27 H 0.06 1.44 6.82 -2.39 -0.02 1.42 16 28 H 0.06 1.43 6.29 -2.39 -0.02 1.41 16 29 H 0.05 1.30 7.45 -2.38 -0.02 1.28 16 30 H 0.34 11.16 7.31 -89.69 -0.66 10.50 16 31 H 0.11 3.21 8.06 -2.39 -0.02 3.19 16 32 H 0.06 1.96 7.44 -2.39 -0.02 1.94 16 33 H 0.40 19.30 7.90 -92.71 -0.73 18.56 16 34 H 0.28 14.03 8.31 -92.71 -0.77 13.26 16 35 H 0.09 1.75 8.14 -2.38 -0.02 1.73 16 36 H 0.11 2.43 6.32 -2.39 -0.02 2.42 16 37 H 0.13 2.13 8.06 -2.91 -0.02 2.10 16 38 H 0.16 1.27 8.06 -2.91 -0.02 1.24 16 39 H 0.15 1.36 8.06 -2.91 -0.02 1.34 16 40 H 0.14 2.03 8.06 -2.91 -0.02 2.00 16 Total: -1.00 -67.11 330.66 1.08 -66.04 By element: Atomic # 1 Polarization: 39.67 SS G_CDS: -0.31 Total: 39.36 kcal Atomic # 6 Polarization: -7.83 SS G_CDS: 4.55 Total: -3.28 kcal Atomic # 7 Polarization: -99.77 SS G_CDS: -4.18 Total: -103.95 kcal Atomic # 8 Polarization: -42.15 SS G_CDS: -1.00 Total: -43.15 kcal Atomic # 14 Polarization: 42.96 SS G_CDS: 2.03 Total: 44.99 kcal Total: -67.11 1.08 -66.04 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000185576173.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.322 kcal (2) G-P(sol) polarization free energy of solvation -67.113 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.791 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.076 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.037 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.715 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds