Wall clock time and date at job start Tue Mar 31 2020 02:58:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.46501 * 119.99509 * 2 1 4 4 C 1.39703 * 120.00441 * 180.02562 * 2 1 3 5 5 C 1.39030 * 120.00548 * 183.98949 * 4 2 1 6 6 C 1.38191 * 120.21857 * 179.97438 * 5 4 2 7 7 C 1.38030 * 120.23213 * 359.71653 * 6 5 4 8 8 C 1.39581 * 120.00101 * 0.55987 * 7 6 5 9 9 C 1.47862 * 120.10936 * 179.71868 * 8 7 6 10 10 O 1.21545 * 120.00190 * 172.49731 * 9 8 7 11 11 N 1.34780 * 119.99994 * 352.49768 * 9 8 7 12 12 C 1.47580 * 134.49357 * 174.59642 * 11 9 8 13 13 C 1.53936 * 86.12050 * 155.35648 * 12 11 9 14 14 O 1.42898 * 113.74379 * 269.15703 * 13 12 11 15 15 C 1.50697 * 113.74817 * 137.95070 * 13 12 11 16 16 H 1.08009 * 119.99473 * 1.92172 * 15 13 12 17 17 C 1.37874 * 120.00498 * 181.92533 * 15 13 12 18 18 N 1.31514 * 119.99860 * 0.02562 * 17 15 13 19 19 Si 1.86806 * 119.99905 * 179.97438 * 17 15 13 20 20 H 1.48494 * 109.47421 * 270.00047 * 19 17 15 21 21 H 1.48504 * 109.46982 * 30.00219 * 19 17 15 22 22 H 1.48505 * 109.46764 * 150.00029 * 19 17 15 23 23 C 1.47812 * 134.45600 * 354.46241 * 11 9 8 24 24 C 1.38646 * 120.00242 * 3.96124 * 4 2 1 25 25 H 1.08998 * 109.46733 * 270.00055 * 1 2 3 26 26 H 1.08998 * 109.47545 * 30.00356 * 1 2 3 27 27 H 1.09002 * 109.46755 * 150.00324 * 1 2 3 28 28 H 1.08997 * 109.47171 * 185.32910 * 3 2 1 29 29 H 1.09006 * 109.46922 * 305.32449 * 3 2 1 30 30 H 1.08996 * 109.47419 * 65.32429 * 3 2 1 31 31 H 1.07999 * 119.88631 * 359.97438 * 5 4 2 32 32 H 1.08007 * 119.88846 * 180.02562 * 6 5 4 33 33 H 1.07998 * 120.00204 * 180.29532 * 7 6 5 34 34 H 1.08993 * 113.77048 * 41.04925 * 12 11 9 35 35 H 1.09008 * 113.86689 * 269.67303 * 12 11 9 36 36 H 0.96694 * 114.00396 * 178.07406 * 14 13 12 37 37 H 0.97006 * 119.99929 * 180.02562 * 18 17 15 38 38 H 1.08994 * 113.77133 * 90.37678 * 23 11 9 39 39 H 1.09005 * 113.83560 * 318.91201 * 23 11 9 40 40 H 1.07996 * 120.11373 * 0.02562 * 24 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.1637 -1.2098 -0.0005 5 6 3.5514 -1.2113 0.0832 6 6 4.2469 -2.4055 0.0836 7 6 3.5682 -3.6050 0.0067 8 6 2.1754 -3.6143 -0.0836 9 6 1.4464 -4.8977 -0.1724 10 8 0.2325 -4.9124 -0.1135 11 7 2.1280 -6.0512 -0.3186 12 6 1.7533 -7.4785 -0.3393 13 6 3.0342 -7.6951 -1.1651 14 8 2.8316 -7.6010 -2.5765 15 6 3.8150 -8.9200 -0.7640 16 1 3.4417 -9.5667 0.0164 17 6 5.0057 -9.2153 -1.3932 18 7 5.4605 -8.4276 -2.3431 19 14 5.9738 -10.7334 -0.8954 20 1 6.9221 -10.3814 0.1917 21 1 5.0379 -11.7820 -0.4158 22 1 6.7308 -11.2437 -2.0667 23 6 3.5510 -6.3937 -0.5251 24 6 1.4730 -2.4091 -0.0840 25 1 -0.3633 0.0000 1.0277 26 1 -0.3634 0.8899 -0.5139 27 1 -0.3633 -0.8900 -0.5138 28 1 3.2652 1.0719 -0.0954 29 1 1.8644 1.8805 -0.8385 30 1 2.0076 1.7980 0.9338 31 1 4.0876 -0.2761 0.1482 32 1 5.3249 -2.4005 0.1493 33 1 4.1152 -4.5362 0.0120 34 1 0.8355 -7.6838 -0.8900 35 1 1.7767 -7.9548 0.6409 36 1 3.6391 -7.7073 -3.0977 37 1 6.2981 -8.6355 -2.7860 38 1 4.1043 -6.5491 0.4010 39 1 4.0658 -5.7346 -1.2242 40 1 0.3951 -2.4102 -0.1491 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000188678708.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:58:04 Heat of formation + Delta-G solvation = -15.884732 kcal Electronic energy + Delta-G solvation = -22973.633676 eV Core-core repulsion = 19561.674470 eV Total energy + Delta-G solvation = -3411.959207 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.56218 -40.31453 -38.93355 -37.02188 -35.83638 -34.14127 -32.44980 -31.38466 -30.11101 -29.05272 -27.23191 -27.18894 -25.64916 -24.02876 -22.34923 -21.47324 -20.28366 -19.30508 -18.45897 -17.81982 -17.15911 -16.91174 -16.39358 -16.37834 -16.18090 -15.96120 -15.80384 -15.04357 -14.83298 -14.66033 -14.33226 -14.14108 -13.86731 -13.43216 -13.39000 -13.38312 -13.25305 -12.90971 -12.87499 -12.74817 -12.39053 -12.22439 -12.16517 -11.95343 -11.36916 -11.00751 -10.87406 -10.64051 -10.21135 -10.00770 -9.56036 -8.26494 -8.24473 -6.41758 -0.09753 0.55771 1.48562 1.52152 1.61087 1.85512 1.87425 2.23203 2.42715 2.93296 2.98131 3.39747 3.75664 3.90049 3.99097 4.14280 4.20372 4.30923 4.42551 4.44958 4.49517 4.54482 4.58286 4.62488 4.76901 4.77848 4.83931 4.86422 4.90310 4.93915 5.05447 5.18391 5.24040 5.45745 5.53957 5.74040 5.77907 5.93713 6.29437 6.47068 6.63696 6.76242 7.08351 7.31476 7.44934 8.81638 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.028622 B = 0.003754 C = 0.003471 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 978.036980 B = 7456.960534 C = 8065.391534 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.088 3.912 2 N -0.644 5.644 3 C 0.086 3.914 4 C 0.200 3.800 5 C -0.170 4.170 6 C -0.075 4.075 7 C -0.164 4.164 8 C -0.100 4.100 9 C 0.560 3.440 10 O -0.599 6.599 11 N -0.628 5.628 12 C 0.110 3.890 13 C 0.220 3.780 14 O -0.587 6.587 15 C -0.557 4.557 16 H 0.073 0.927 17 C 0.035 3.965 18 N -0.914 5.914 19 Si 0.969 3.031 20 H -0.270 1.270 21 H -0.272 1.272 22 H -0.284 1.284 23 C 0.093 3.907 24 C -0.160 4.160 25 H 0.051 0.949 26 H 0.091 0.909 27 H 0.053 0.947 28 H 0.087 0.913 29 H 0.069 0.931 30 H 0.064 0.936 31 H 0.162 0.838 32 H 0.158 0.842 33 H 0.133 0.867 34 H 0.059 0.941 35 H 0.107 0.893 36 H 0.388 0.612 37 H 0.276 0.724 38 H 0.098 0.902 39 H 0.074 0.926 40 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.754 17.159 5.120 17.922 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 N -0.356 5.356 3 C -0.056 4.056 4 C 0.098 3.902 5 C -0.192 4.192 6 C -0.093 4.093 7 C -0.184 4.184 8 C -0.103 4.103 9 C 0.353 3.647 10 O -0.483 6.483 11 N -0.359 5.359 12 C -0.012 4.012 13 C 0.179 3.821 14 O -0.399 6.399 15 C -0.595 4.595 16 H 0.091 0.909 17 C -0.166 4.166 18 N -0.554 5.554 19 Si 0.794 3.206 20 H -0.195 1.195 21 H -0.197 1.197 22 H -0.209 1.209 23 C -0.029 4.029 24 C -0.184 4.184 25 H 0.070 0.930 26 H 0.109 0.891 27 H 0.072 0.928 28 H 0.105 0.895 29 H 0.088 0.912 30 H 0.083 0.917 31 H 0.179 0.821 32 H 0.176 0.824 33 H 0.150 0.850 34 H 0.077 0.923 35 H 0.125 0.875 36 H 0.242 0.758 37 H 0.086 0.914 38 H 0.116 0.884 39 H 0.092 0.908 40 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -0.550 17.629 5.216 18.393 hybrid contribution 0.647 -1.129 -0.170 1.312 sum 0.097 16.500 5.045 17.255 Atomic orbital electron populations 1.21727 0.78980 1.03145 1.01648 1.46526 1.05652 1.03069 1.80372 1.21903 0.97922 0.83542 1.02220 1.17799 0.91989 0.85714 0.94711 1.21242 0.91478 0.99919 1.06545 1.21209 1.01211 0.90612 0.96272 1.21804 0.92530 1.00667 1.03443 1.19611 0.94634 0.91597 1.04499 1.18602 0.86305 0.84002 0.75823 1.90633 1.15091 1.87731 1.54835 1.50112 1.11733 1.05243 1.68830 1.23520 0.99178 0.78260 1.00231 1.20134 0.90381 0.92038 0.79545 1.86058 1.39700 1.95341 1.18771 1.21695 1.06111 1.10149 1.21496 0.90918 1.25732 0.97583 0.99215 0.94072 1.69471 1.22427 1.38728 1.24819 0.85385 0.78288 0.79063 0.77851 1.19528 1.19703 1.20938 1.24272 0.81290 0.97006 1.00363 1.20691 0.99939 0.90384 1.07377 0.93012 0.89062 0.92794 0.89496 0.91245 0.91746 0.82116 0.82414 0.84963 0.92291 0.87492 0.75804 0.91420 0.88425 0.90790 0.86148 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.61 10.32 127.77 1.32 2.93 16 2 N -0.64 -13.26 3.41 -747.39 -2.55 -15.81 16 3 C 0.09 1.07 10.60 127.77 1.35 2.42 16 4 C 0.20 5.34 6.54 38.17 0.25 5.58 16 5 C -0.17 -3.83 9.28 22.45 0.21 -3.62 16 6 C -0.07 -1.87 10.02 22.21 0.22 -1.65 16 7 C -0.16 -5.41 9.07 22.54 0.20 -5.21 16 8 C -0.10 -3.83 5.87 -20.10 -0.12 -3.95 16 9 C 0.56 25.63 7.98 86.79 0.69 26.32 16 10 O -0.60 -30.54 17.10 -3.86 -0.07 -30.60 16 11 N -0.63 -28.29 3.60 -843.05 -3.03 -31.33 16 12 C 0.11 5.01 8.23 86.48 0.71 5.72 16 13 C 0.22 10.72 1.40 -10.88 -0.02 10.70 16 14 O -0.59 -31.19 13.48 -148.98 -2.01 -33.19 16 15 C -0.56 -27.66 8.61 25.60 0.22 -27.44 16 16 H 0.07 3.51 7.81 -2.91 -0.02 3.48 16 17 C 0.03 1.70 5.39 84.65 0.46 2.16 16 18 N -0.91 -45.49 11.20 21.45 0.24 -45.25 16 19 Si 0.97 38.91 29.54 68.60 2.03 40.94 16 20 H -0.27 -10.48 7.11 99.48 0.71 -9.77 16 21 H -0.27 -10.91 7.11 99.48 0.71 -10.21 16 22 H -0.28 -11.32 7.11 99.48 0.71 -10.62 16 23 C 0.09 4.02 5.60 86.44 0.48 4.50 16 24 C -0.16 -5.46 8.78 22.67 0.20 -5.26 16 25 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 26 H 0.09 1.16 8.07 -2.39 -0.02 1.14 16 27 H 0.05 1.19 6.04 -2.39 -0.01 1.18 16 28 H 0.09 0.91 5.35 -2.39 -0.01 0.89 16 29 H 0.07 0.69 8.14 -2.38 -0.02 0.67 16 30 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 31 H 0.16 2.40 5.78 -2.91 -0.02 2.38 16 32 H 0.16 2.90 8.06 -2.91 -0.02 2.88 16 33 H 0.13 4.50 4.12 -2.91 -0.01 4.49 16 34 H 0.06 2.78 8.14 -2.39 -0.02 2.76 16 35 H 0.11 4.36 8.09 -2.38 -0.02 4.34 16 36 H 0.39 20.61 6.60 -74.06 -0.49 20.12 16 37 H 0.28 12.99 8.31 -92.70 -0.77 12.22 16 38 H 0.10 3.94 7.99 -2.39 -0.02 3.92 16 39 H 0.07 3.22 6.93 -2.38 -0.02 3.21 16 40 H 0.12 4.27 5.66 -2.91 -0.02 4.26 16 Total: -1.00 -64.55 328.73 1.39 -63.16 By element: Atomic # 1 Polarization: 38.26 SS G_CDS: 0.59 Total: 38.85 kcal Atomic # 6 Polarization: 7.04 SS G_CDS: 6.19 Total: 13.23 kcal Atomic # 7 Polarization: -87.04 SS G_CDS: -5.34 Total: -92.38 kcal Atomic # 8 Polarization: -61.72 SS G_CDS: -2.07 Total: -63.80 kcal Atomic # 14 Polarization: 38.91 SS G_CDS: 2.03 Total: 40.94 kcal Total: -64.55 1.39 -63.16 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000188678708.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.274 kcal (2) G-P(sol) polarization free energy of solvation -64.550 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.275 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.391 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.159 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.885 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds