Wall clock time and date at job start Tue Mar 31 2020 02:37:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52991 * 109.47177 * 2 1 4 4 C 1.53003 * 109.46978 * 120.00176 * 2 1 3 5 5 H 1.08997 * 109.47239 * 56.83193 * 4 2 1 6 6 N 1.46500 * 109.46955 * 296.83440 * 4 2 1 7 7 C 1.34780 * 119.99815 * 155.00494 * 6 4 2 8 8 O 1.21585 * 120.00020 * 359.97438 * 7 6 4 9 9 C 1.47644 * 119.99629 * 179.97438 * 7 6 4 10 10 C 1.40015 * 119.89303 * 179.97438 * 9 7 6 11 11 C 1.36311 * 120.10663 * 180.23246 * 10 9 7 12 12 C 1.40890 * 119.89128 * 359.51759 * 11 10 9 13 13 C 1.41109 * 120.10436 * 180.23222 * 12 11 10 14 14 H 1.08000 * 119.99995 * 207.24841 * 13 12 11 15 15 C 1.40223 * 120.00067 * 27.24157 * 13 12 11 16 16 N 1.30649 * 120.00154 * 12.95002 * 15 13 12 17 17 Si 1.86803 * 120.00102 * 192.94275 * 15 13 12 18 18 H 1.48505 * 109.46556 * 90.00676 * 17 15 13 19 19 H 1.48499 * 109.47009 * 210.00251 * 17 15 13 20 20 H 1.48491 * 109.47289 * 330.00674 * 17 15 13 21 21 C 1.40886 * 119.79313 * 0.48112 * 12 11 10 22 22 C 1.36322 * 119.89208 * 359.74747 * 21 12 11 23 23 C 1.50702 * 109.46991 * 176.83386 * 4 2 1 24 24 N 1.34778 * 120.00089 * 277.62961 * 23 4 2 25 25 O 1.21277 * 120.00041 * 97.63344 * 23 4 2 26 26 H 1.09000 * 109.47130 * 305.09627 * 1 2 3 27 27 H 1.09001 * 109.47140 * 65.09193 * 1 2 3 28 28 H 1.09004 * 109.47256 * 185.09975 * 1 2 3 29 29 H 1.09000 * 109.46858 * 239.99754 * 2 1 3 30 30 H 1.09002 * 109.47018 * 179.97438 * 3 2 1 31 31 H 1.08998 * 109.47265 * 299.99784 * 3 2 1 32 32 H 1.09000 * 109.47427 * 60.00102 * 3 2 1 33 33 H 0.96999 * 119.99789 * 334.99760 * 6 4 2 34 34 H 1.07997 * 119.94568 * 359.95250 * 10 9 7 35 35 H 1.08001 * 120.05693 * 179.74216 * 11 10 9 36 36 H 0.96993 * 120.00471 * 179.97438 * 16 15 13 37 37 H 1.07996 * 120.05818 * 179.73313 * 21 12 11 38 38 H 1.07996 * 119.94889 * 179.97438 * 22 21 12 39 39 H 0.97000 * 119.99683 * 4.95342 * 24 23 4 40 40 H 0.96994 * 120.00119 * 184.95696 * 24 23 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7213 1.2493 5 1 1.6310 -1.7312 1.2781 6 7 1.6149 0.0119 2.4442 7 6 1.4869 -0.6331 3.6207 8 8 1.7239 -1.8237 3.6901 9 6 1.0590 0.1060 4.8250 10 6 0.9263 -0.5664 6.0460 11 6 0.5270 0.1107 7.1596 12 6 0.2575 1.4915 7.0828 13 6 -0.1514 2.1978 8.2339 14 1 -0.7612 3.0837 8.1356 15 6 0.2340 1.7495 9.5054 16 7 1.1667 0.8423 9.6233 17 14 -0.5861 2.4495 11.0309 18 1 -1.7748 1.6284 11.3746 19 1 0.3744 2.4282 12.1632 20 1 -1.0099 3.8481 10.7674 21 6 0.3925 2.1637 5.8521 22 6 0.7879 1.4771 4.7427 23 6 3.5449 -0.7896 1.2106 24 7 4.1576 -1.7562 0.4986 25 8 4.2048 0.0251 1.8203 26 1 -0.3633 0.5909 0.8408 27 1 -0.3633 0.4328 -0.9321 28 1 -0.3634 -1.0236 0.0914 29 1 1.8933 -0.5139 -0.8900 30 1 3.1300 1.4424 0.0005 31 1 1.6767 1.9562 -0.8900 32 1 1.6767 1.9563 0.8900 33 1 1.4256 0.9617 2.3887 34 1 1.1363 -1.6242 6.1045 35 1 0.4209 -0.4096 8.1000 36 1 1.4335 0.5324 10.5028 37 1 0.1828 3.2211 5.7874 38 1 0.8912 1.9914 3.7987 39 1 3.6331 -2.3634 -0.0463 40 1 5.1230 -1.8445 0.5312 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000270451864.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:37:30 Heat of formation + Delta-G solvation = -97.329693 kcal Electronic energy + Delta-G solvation = -22907.245827 eV Core-core repulsion = 19491.754902 eV Total energy + Delta-G solvation = -3415.490925 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.57864 -40.12535 -38.83687 -37.32869 -35.68170 -34.69792 -33.92367 -31.95673 -31.34733 -28.77556 -28.08471 -27.26010 -23.92018 -22.83500 -22.44247 -21.50003 -20.67933 -19.37249 -18.83825 -18.46814 -17.83605 -17.12808 -16.73672 -16.09600 -15.74782 -15.65718 -15.39071 -15.37088 -14.89564 -14.81840 -14.44976 -14.09786 -13.98919 -13.64475 -13.35884 -13.26100 -12.95196 -12.84229 -12.63258 -12.38823 -12.22705 -11.88082 -11.83630 -11.74815 -11.36417 -11.30839 -11.17304 -10.79138 -10.66872 -10.05829 -9.58254 -9.39522 -8.75021 -6.50198 0.41009 1.13550 1.38484 1.42668 1.53878 1.54851 2.04924 2.16487 2.26229 2.66567 2.84245 3.64280 3.67969 3.84621 3.92274 4.16343 4.26933 4.29605 4.39416 4.51347 4.59891 4.81352 4.94299 4.96410 4.99060 5.01235 5.12973 5.19630 5.24611 5.35362 5.41931 5.45290 5.58379 5.76659 5.87278 5.94188 6.00527 6.19742 6.42460 6.55739 6.63126 6.76836 6.88242 7.31231 7.37994 8.19497 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.029130 B = 0.003531 C = 0.003380 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 960.967218 B = 7927.543819 C = 8281.913091 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.084 4.084 3 C -0.154 4.154 4 C 0.128 3.872 5 H 0.110 0.890 6 N -0.701 5.701 7 C 0.574 3.426 8 O -0.603 6.603 9 C -0.290 4.290 10 C -0.051 4.051 11 C -0.197 4.197 12 C 0.101 3.899 13 C -0.473 4.473 14 H 0.093 0.907 15 C 0.031 3.969 16 N -0.811 5.811 17 Si 0.993 3.007 18 H -0.260 1.260 19 H -0.269 1.269 20 H -0.251 1.251 21 C -0.242 4.242 22 C -0.040 4.040 23 C 0.502 3.498 24 N -0.834 5.834 25 O -0.583 6.583 26 H 0.047 0.953 27 H 0.084 0.916 28 H 0.060 0.940 29 H 0.118 0.882 30 H 0.043 0.957 31 H 0.087 0.913 32 H 0.048 0.952 33 H 0.408 0.592 34 H 0.092 0.908 35 H 0.107 0.893 36 H 0.294 0.706 37 H 0.117 0.883 38 H 0.128 0.872 39 H 0.418 0.582 40 H 0.406 0.594 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.141 -0.867 -17.679 17.737 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.103 4.103 3 C -0.212 4.212 4 C 0.019 3.981 5 H 0.128 0.872 6 N -0.353 5.353 7 C 0.368 3.632 8 O -0.487 6.487 9 C -0.295 4.295 10 C -0.070 4.070 11 C -0.217 4.217 12 C 0.098 3.902 13 C -0.500 4.500 14 H 0.111 0.889 15 C -0.187 4.187 16 N -0.435 5.435 17 Si 0.812 3.188 18 H -0.185 1.185 19 H -0.193 1.193 20 H -0.174 1.174 21 C -0.262 4.262 22 C -0.058 4.058 23 C 0.286 3.714 24 N -0.399 5.399 25 O -0.462 6.462 26 H 0.066 0.934 27 H 0.103 0.897 28 H 0.079 0.921 29 H 0.136 0.864 30 H 0.063 0.937 31 H 0.106 0.894 32 H 0.067 0.933 33 H 0.247 0.753 34 H 0.111 0.889 35 H 0.125 0.875 36 H 0.105 0.895 37 H 0.135 0.865 38 H 0.146 0.854 39 H 0.250 0.750 40 H 0.238 0.762 Dipole moment (debyes) X Y Z Total from point charges -0.578 -1.224 -17.052 17.106 hybrid contribution 0.282 0.002 0.876 0.920 sum -0.296 -1.222 -16.176 16.225 Atomic orbital electron populations 1.21840 0.92798 1.02662 1.02972 1.21378 0.97695 0.96676 0.94595 1.21911 1.00683 0.95661 1.02908 1.21147 0.89874 0.99496 0.87568 0.87210 1.45490 1.69194 1.13312 1.07340 1.18434 0.75033 0.86071 0.83664 1.90598 1.54721 1.17078 1.86281 1.19186 1.21617 0.95290 0.93371 1.20558 0.95974 0.98000 0.92504 1.20992 1.08547 0.94899 0.97244 1.18168 0.86877 0.91773 0.93392 1.20159 1.28141 1.10725 0.90999 0.88937 1.27042 0.93362 0.93892 1.04389 1.69798 1.21790 1.23834 1.28110 0.85032 0.78619 0.79915 0.75194 1.18478 1.19324 1.17448 1.20965 1.12189 0.99275 0.93738 1.20661 0.95087 0.92196 0.97885 1.21528 0.91925 0.80409 0.77556 1.43649 1.12217 1.34452 1.49601 1.90727 1.67926 1.41966 1.45613 0.93395 0.89742 0.92095 0.86393 0.93739 0.89415 0.93306 0.75280 0.88948 0.87520 0.89509 0.86500 0.85446 0.75029 0.76245 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.19 9.00 71.98 0.65 -1.54 16 2 C -0.08 -1.38 2.74 -10.80 -0.03 -1.41 16 3 C -0.15 -2.76 8.76 71.98 0.63 -2.13 16 4 C 0.13 3.28 2.08 44.25 0.09 3.37 16 5 H 0.11 2.78 7.58 -2.39 -0.02 2.76 16 6 N -0.70 -23.21 4.00 -449.15 -1.80 -25.01 16 7 C 0.57 25.12 7.72 86.73 0.67 25.79 16 8 O -0.60 -29.39 15.98 -3.99 -0.06 -29.46 16 9 C -0.29 -13.87 5.89 -19.93 -0.12 -13.99 16 10 C -0.05 -2.67 9.52 22.25 0.21 -2.46 16 11 C -0.20 -10.78 8.61 22.47 0.19 -10.59 16 12 C 0.10 5.38 5.56 -21.28 -0.12 5.26 16 13 C -0.47 -24.26 9.05 23.46 0.21 -24.05 16 14 H 0.09 4.42 7.88 -2.91 -0.02 4.40 16 15 C 0.03 1.48 5.22 85.35 0.45 1.93 16 16 N -0.81 -41.78 10.84 21.87 0.24 -41.54 16 17 Si 0.99 36.18 29.58 68.60 2.03 38.21 16 18 H -0.26 -9.22 7.11 99.48 0.71 -8.51 16 19 H -0.27 -9.41 7.11 99.48 0.71 -8.71 16 20 H -0.25 -8.73 7.11 99.48 0.71 -8.02 16 21 C -0.24 -11.44 9.73 22.47 0.22 -11.23 16 22 C -0.04 -1.72 9.47 22.25 0.21 -1.51 16 23 C 0.50 14.28 6.34 87.66 0.56 14.84 16 24 N -0.83 -15.02 8.87 -173.53 -1.54 -16.56 16 25 O -0.58 -22.62 17.00 -3.02 -0.05 -22.67 16 26 H 0.05 0.88 7.83 -2.39 -0.02 0.87 16 27 H 0.08 0.89 8.14 -2.39 -0.02 0.87 16 28 H 0.06 0.92 8.14 -2.38 -0.02 0.90 16 29 H 0.12 1.20 8.14 -2.39 -0.02 1.18 16 30 H 0.04 0.96 7.01 -2.39 -0.02 0.95 16 31 H 0.09 1.12 8.14 -2.39 -0.02 1.10 16 32 H 0.05 0.98 6.36 -2.39 -0.02 0.97 16 33 H 0.41 12.27 4.67 -92.71 -0.43 11.84 16 34 H 0.09 4.85 7.63 -2.91 -0.02 4.82 16 35 H 0.11 6.04 6.17 -2.91 -0.02 6.02 16 36 H 0.29 13.62 8.29 -92.71 -0.77 12.85 16 37 H 0.12 4.95 8.06 -2.91 -0.02 4.93 16 38 H 0.13 4.42 6.37 -2.91 -0.02 4.40 16 39 H 0.42 4.27 8.83 -92.71 -0.82 3.45 16 40 H 0.41 6.62 8.93 -92.71 -0.83 5.79 16 Total: -1.00 -73.56 335.48 1.66 -71.90 By element: Atomic # 1 Polarization: 43.83 SS G_CDS: -0.98 Total: 42.85 kcal Atomic # 6 Polarization: -21.54 SS G_CDS: 3.82 Total: -17.72 kcal Atomic # 7 Polarization: -80.02 SS G_CDS: -3.10 Total: -83.12 kcal Atomic # 8 Polarization: -52.01 SS G_CDS: -0.12 Total: -52.12 kcal Atomic # 14 Polarization: 36.18 SS G_CDS: 2.03 Total: 38.21 kcal Total: -73.56 1.66 -71.90 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000270451864.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.426 kcal (2) G-P(sol) polarization free energy of solvation -73.562 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.988 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.659 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.904 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.330 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds