Wall clock time and date at job start Tue Mar 31 2020 02:53:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 N 1.46497 * 109.47058 * 2 1 4 4 C 1.46496 * 119.99647 * 270.00049 * 3 2 1 5 5 C 1.34775 * 120.00119 * 90.00134 * 3 2 1 6 6 O 1.21286 * 119.99976 * 359.97438 * 5 3 2 7 7 C 1.50703 * 120.00084 * 179.97438 * 5 3 2 8 8 N 1.46493 * 109.47063 * 179.97438 * 7 5 3 9 9 C 1.34776 * 119.99933 * 179.97438 * 8 7 5 10 10 O 1.21582 * 119.99748 * 0.02562 * 9 8 7 11 11 C 1.47649 * 120.00001 * 180.02562 * 9 8 7 12 12 C 1.40016 * 119.89637 * 0.24992 * 11 9 8 13 13 C 1.36306 * 120.10434 * 180.25839 * 12 11 9 14 14 C 1.40885 * 119.89590 * 359.47343 * 13 12 11 15 15 C 1.41111 * 120.10921 * 180.30311 * 14 13 12 16 16 H 1.07994 * 120.00597 * 154.53119 * 15 14 13 17 17 C 1.40227 * 119.99382 * 334.52933 * 15 14 13 18 18 N 1.30644 * 120.00033 * 343.05813 * 17 15 14 19 19 Si 1.86799 * 119.99848 * 163.06034 * 17 15 14 20 20 H 1.48501 * 109.47101 * 89.99684 * 19 17 15 21 21 H 1.48501 * 109.47179 * 209.99729 * 19 17 15 22 22 H 1.48501 * 109.46949 * 330.00066 * 19 17 15 23 23 C 1.40889 * 119.79071 * 0.27404 * 14 13 12 24 24 C 1.36316 * 119.89281 * 0.02562 * 23 14 13 25 25 H 1.08994 * 109.46882 * 300.00071 * 1 2 3 26 26 H 1.08997 * 109.46726 * 60.00044 * 1 2 3 27 27 H 1.08999 * 109.47020 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.46503 * 239.99897 * 2 1 3 29 29 H 1.08997 * 109.46726 * 119.99956 * 2 1 3 30 30 H 1.09002 * 109.46969 * 269.99897 * 4 3 2 31 31 H 1.09000 * 109.47501 * 29.99837 * 4 3 2 32 32 H 1.09008 * 109.47218 * 150.00461 * 4 3 2 33 33 H 1.08997 * 109.47011 * 59.99532 * 7 5 3 34 34 H 1.09002 * 109.46574 * 300.00211 * 7 5 3 35 35 H 0.97004 * 120.00572 * 0.02562 * 8 7 5 36 36 H 1.08002 * 119.94001 * 0.03091 * 12 11 9 37 37 H 1.08006 * 120.05292 * 179.74851 * 13 12 11 38 38 H 0.97005 * 119.99903 * 179.97438 * 18 17 15 39 39 H 1.08001 * 120.05483 * 180.02562 * 23 14 13 40 40 H 1.08000 * 119.94946 * 179.97438 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2625 2.0717 -1.2687 5 6 2.2431 2.0165 1.1672 6 8 2.0405 1.4450 2.2176 7 6 2.7459 3.4372 1.1672 8 7 2.9080 3.8978 2.5483 9 6 3.3505 5.1468 2.7946 10 8 3.6147 5.8914 1.8704 11 6 3.5145 5.6109 4.1866 12 6 3.2146 4.7498 5.2492 13 6 3.3593 5.1756 6.5359 14 6 3.8221 6.4806 6.7959 15 6 3.9797 6.9239 8.1263 16 1 4.6850 7.7095 8.3538 17 6 3.2205 6.3443 9.1529 18 7 2.1530 5.6490 8.8632 19 14 3.7353 6.5665 10.9348 20 1 3.0936 7.7866 11.4870 21 1 3.3097 5.3829 11.7242 22 1 5.2117 6.7067 11.0096 23 6 4.1276 7.3416 5.7234 24 6 3.9739 6.9090 4.4399 25 1 -0.3633 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 1.8933 -0.5139 -0.8900 29 1 1.8934 -0.5138 0.8900 30 1 3.2920 1.9004 -1.5834 31 1 1.5818 1.6876 -2.0284 32 1 2.0956 3.1410 -1.1384 33 1 2.0284 4.0766 0.6531 34 1 3.7062 3.4826 0.6534 35 1 2.6976 3.3037 3.2857 36 1 2.8645 3.7480 5.0488 37 1 3.1239 4.5121 7.3550 38 1 1.6280 5.2478 9.5734 39 1 4.4831 8.3427 5.9178 40 1 4.2074 7.5684 3.6170 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000274937971.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:53:53 Heat of formation + Delta-G solvation = -76.934440 kcal Electronic energy + Delta-G solvation = -22116.347628 eV Core-core repulsion = 18701.741107 eV Total energy + Delta-G solvation = -3414.606521 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.41261 -40.44256 -38.88339 -37.03997 -35.67469 -35.48743 -32.64816 -31.94942 -31.31191 -29.14855 -27.66920 -27.19344 -24.32690 -23.39378 -22.77553 -21.33329 -20.44874 -19.36989 -18.87012 -17.93944 -17.29557 -17.13903 -17.08836 -16.49956 -15.79794 -15.74817 -15.44542 -15.04277 -14.72373 -14.55750 -14.37628 -14.18034 -13.85899 -13.73765 -13.58492 -13.41608 -13.22836 -13.02464 -12.88180 -12.83990 -12.64466 -12.36582 -11.97579 -11.79485 -11.38837 -11.13461 -11.07250 -10.80545 -10.21309 -9.78937 -9.58927 -9.41872 -8.79283 -6.49363 0.41416 1.14372 1.37418 1.38587 1.42563 1.54872 1.72988 2.08850 2.17549 2.44316 2.77318 3.35162 3.67785 4.08710 4.14223 4.20178 4.27882 4.29526 4.30392 4.40878 4.45301 4.52085 4.70356 4.80456 4.92106 4.93479 4.98134 5.02172 5.14363 5.26400 5.28331 5.36182 5.50860 5.58259 5.80470 5.92562 5.98951 6.18441 6.21327 6.53043 6.58755 6.76118 6.87562 6.94391 7.33996 8.15945 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.025251 B = 0.003084 C = 0.002792 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1108.596837 B = 9077.171170 C =10024.997905 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.106 3.894 3 N -0.609 5.609 4 C 0.064 3.936 5 C 0.507 3.493 6 O -0.574 6.574 7 C 0.105 3.895 8 N -0.725 5.725 9 C 0.578 3.422 10 O -0.596 6.596 11 C -0.295 4.295 12 C -0.057 4.057 13 C -0.198 4.198 14 C 0.103 3.897 15 C -0.472 4.472 16 H 0.089 0.911 17 C 0.035 3.965 18 N -0.800 5.800 19 Si 0.989 3.011 20 H -0.259 1.259 21 H -0.264 1.264 22 H -0.256 1.256 23 C -0.251 4.251 24 C -0.027 4.027 25 H 0.030 0.970 26 H 0.070 0.930 27 H 0.082 0.918 28 H 0.112 0.888 29 H 0.063 0.937 30 H 0.076 0.924 31 H 0.100 0.900 32 H 0.078 0.922 33 H 0.106 0.894 34 H 0.108 0.892 35 H 0.408 0.592 36 H 0.111 0.889 37 H 0.111 0.889 38 H 0.296 0.704 39 H 0.109 0.891 40 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.226 -10.431 -14.602 18.083 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.016 4.016 3 N -0.341 5.341 4 C -0.077 4.077 5 C 0.295 3.705 6 O -0.454 6.454 7 C -0.022 4.022 8 N -0.380 5.380 9 C 0.372 3.628 10 O -0.480 6.480 11 C -0.300 4.300 12 C -0.076 4.076 13 C -0.217 4.217 14 C 0.099 3.901 15 C -0.499 4.499 16 H 0.107 0.893 17 C -0.184 4.184 18 N -0.424 5.424 19 Si 0.809 3.191 20 H -0.184 1.184 21 H -0.188 1.188 22 H -0.179 1.179 23 C -0.271 4.271 24 C -0.047 4.047 25 H 0.049 0.951 26 H 0.089 0.911 27 H 0.101 0.899 28 H 0.131 0.869 29 H 0.081 0.919 30 H 0.094 0.906 31 H 0.119 0.881 32 H 0.097 0.903 33 H 0.124 0.876 34 H 0.125 0.875 35 H 0.247 0.753 36 H 0.129 0.871 37 H 0.128 0.872 38 H 0.108 0.892 39 H 0.127 0.873 40 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -2.378 -10.398 -14.665 18.134 hybrid contribution -0.148 -0.106 1.135 1.150 sum -2.526 -10.504 -13.529 17.314 Atomic orbital electron populations 1.22092 0.95306 1.03137 1.01607 1.21627 0.94885 0.81149 1.03913 1.47955 1.64870 1.15013 1.06311 1.22194 1.03386 0.98172 0.83950 1.20685 0.77311 0.88406 0.84089 1.90691 1.53854 1.68259 1.32610 1.21168 1.03728 0.92144 0.85128 1.45628 1.68912 1.14819 1.08596 1.18284 0.75010 0.80578 0.88949 1.90603 1.54573 1.56024 1.46803 1.19134 1.21743 0.97938 0.91161 1.20702 0.96648 0.97555 0.92675 1.20983 1.08530 0.96676 0.95513 1.18142 0.87109 0.91155 0.93652 1.20137 1.19614 1.18085 0.92051 0.89304 1.26988 0.92750 0.92019 1.06609 1.69777 1.10947 1.23538 1.38133 0.85086 0.80103 0.79288 0.74636 1.18366 1.18816 1.17934 1.20895 1.14052 0.99769 0.92371 1.20515 0.94063 0.94008 0.96079 0.95119 0.91114 0.89914 0.86947 0.91863 0.90576 0.88122 0.90303 0.87621 0.87468 0.75340 0.87097 0.87152 0.89234 0.87275 0.87183 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.34 10.24 71.99 0.74 -1.60 16 2 C 0.11 1.60 6.13 86.38 0.53 2.13 16 3 N -0.61 -10.79 2.87 -846.74 -2.43 -13.23 16 4 C 0.06 0.62 10.24 127.77 1.31 1.93 16 5 C 0.51 13.33 7.74 87.66 0.68 14.01 16 6 O -0.57 -19.69 15.25 -3.05 -0.05 -19.74 16 7 C 0.10 2.85 4.71 85.64 0.40 3.25 16 8 N -0.72 -26.13 5.48 -469.90 -2.57 -28.71 16 9 C 0.58 24.99 7.76 86.73 0.67 25.67 16 10 O -0.60 -27.49 16.32 -3.97 -0.06 -27.56 16 11 C -0.30 -14.04 5.89 -19.93 -0.12 -14.16 16 12 C -0.06 -2.70 9.47 22.25 0.21 -2.49 16 13 C -0.20 -10.30 8.63 22.47 0.19 -10.10 16 14 C 0.10 5.47 5.57 -21.28 -0.12 5.35 16 15 C -0.47 -24.24 9.05 23.46 0.21 -24.03 16 16 H 0.09 4.32 7.90 -2.91 -0.02 4.30 16 17 C 0.04 1.67 5.15 85.35 0.44 2.11 16 18 N -0.80 -39.65 10.95 21.87 0.24 -39.41 16 19 Si 0.99 35.58 29.59 68.60 2.03 37.61 16 20 H -0.26 -8.97 7.11 99.48 0.71 -8.26 16 21 H -0.26 -9.02 7.11 99.48 0.71 -8.31 16 22 H -0.26 -9.04 7.11 99.48 0.71 -8.34 16 23 C -0.25 -12.61 9.73 22.47 0.22 -12.39 16 24 C -0.03 -1.33 9.52 22.25 0.21 -1.12 16 25 H 0.03 0.63 8.14 -2.39 -0.02 0.61 16 26 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 27 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 28 H 0.11 0.93 8.07 -2.39 -0.02 0.91 16 29 H 0.06 1.26 7.42 -2.39 -0.02 1.24 16 30 H 0.08 0.56 8.14 -2.39 -0.02 0.54 16 31 H 0.10 0.48 8.07 -2.39 -0.02 0.46 16 32 H 0.08 0.77 6.44 -2.38 -0.02 0.76 16 33 H 0.11 2.61 7.40 -2.39 -0.02 2.59 16 34 H 0.11 2.61 8.11 -2.39 -0.02 2.59 16 35 H 0.41 15.06 5.44 -92.71 -0.50 14.55 16 36 H 0.11 4.71 6.37 -2.91 -0.02 4.69 16 37 H 0.11 5.87 6.18 -2.91 -0.02 5.86 16 38 H 0.30 13.10 8.29 -92.70 -0.77 12.33 16 39 H 0.11 5.06 8.06 -2.91 -0.02 5.04 16 40 H 0.11 5.05 7.63 -2.91 -0.02 5.03 16 Total: -1.00 -67.52 339.57 3.29 -64.23 By element: Atomic # 1 Polarization: 37.69 SS G_CDS: 0.56 Total: 38.25 kcal Atomic # 6 Polarization: -17.03 SS G_CDS: 5.58 Total: -11.45 kcal Atomic # 7 Polarization: -76.57 SS G_CDS: -4.77 Total: -81.34 kcal Atomic # 8 Polarization: -47.19 SS G_CDS: -0.11 Total: -47.30 kcal Atomic # 14 Polarization: 35.58 SS G_CDS: 2.03 Total: 37.61 kcal Total: -67.52 3.29 -64.23 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000274937971.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.706 kcal (2) G-P(sol) polarization free energy of solvation -67.518 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.224 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.289 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.229 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.934 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds