Wall clock time and date at job start Tue Mar 31 2020 02:58:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46491 * 1 3 3 C 1.46502 * 120.00384 * 2 1 4 4 C 1.39051 * 119.99928 * 179.97438 * 2 1 3 5 5 C 1.39216 * 119.92996 * 0.02562 * 4 2 1 6 6 C 1.37612 * 120.06747 * 180.02562 * 5 4 2 7 7 C 1.39794 * 119.93067 * 359.97438 * 6 5 4 8 8 C 1.47521 * 120.06889 * 179.97438 * 7 6 5 9 9 O 1.21597 * 120.00226 * 351.49275 * 8 7 6 10 10 N 1.34777 * 120.00018 * 171.49549 * 8 7 6 11 11 C 1.47583 * 134.49160 * 181.89466 * 10 8 7 12 12 C 1.53948 * 86.11428 * 155.35711 * 11 10 8 13 13 O 1.42897 * 113.74340 * 269.14938 * 12 11 10 14 14 C 1.50698 * 113.73829 * 137.95423 * 12 11 10 15 15 H 1.08006 * 120.00234 * 17.16107 * 14 12 11 16 16 C 1.37874 * 119.99876 * 197.16482 * 14 12 11 17 17 N 1.31520 * 120.00221 * 191.82529 * 16 14 12 18 18 Si 1.86795 * 120.00319 * 11.82125 * 16 14 12 19 19 H 1.48491 * 109.47727 * 179.97438 * 18 16 14 20 20 H 1.48505 * 109.47172 * 300.00766 * 18 16 14 21 21 H 1.48508 * 109.46787 * 60.00124 * 18 16 14 22 22 C 1.47810 * 134.45838 * 1.76086 * 10 8 7 23 23 C 1.39792 * 119.86567 * 0.24802 * 7 6 5 24 24 C 1.37617 * 119.92597 * 359.49477 * 23 7 6 25 25 H 1.09002 * 109.47379 * 269.99783 * 1 2 3 26 26 H 1.08997 * 109.47296 * 30.00188 * 1 2 3 27 27 H 1.09008 * 109.47181 * 149.99895 * 1 2 3 28 28 H 1.08995 * 109.46865 * 270.00284 * 3 2 1 29 29 H 1.09004 * 109.46421 * 29.99836 * 3 2 1 30 30 H 1.08999 * 109.47527 * 149.99456 * 3 2 1 31 31 H 1.07997 * 119.96723 * 359.97438 * 5 4 2 32 32 H 1.07994 * 120.03360 * 179.97438 * 6 5 4 33 33 H 1.09000 * 113.76723 * 41.05685 * 11 10 8 34 34 H 1.08992 * 113.76912 * 269.65836 * 11 10 8 35 35 H 0.96696 * 114.00681 * 176.85659 * 13 12 11 36 36 H 0.97008 * 119.99664 * 354.87072 * 17 16 14 37 37 H 1.09000 * 113.76927 * 90.37488 * 22 10 8 38 38 H 1.09007 * 113.83579 * 318.91560 * 22 10 8 39 39 H 1.07992 * 120.03856 * 179.75016 * 23 7 6 40 40 H 1.08000 * 119.96594 * 180.25461 * 24 23 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.1602 -1.2042 0.0005 5 6 1.4626 -2.4090 0.0005 6 6 2.1478 -3.6024 0.0016 7 6 3.5457 -3.6041 0.0021 8 6 4.2833 -4.8817 0.0039 9 8 3.6853 -5.9288 0.1606 10 7 5.6200 -4.8883 -0.1682 11 6 6.6464 -5.9452 -0.2557 12 6 7.4792 -4.9248 -1.0527 13 8 7.2672 -4.9864 -2.4645 14 6 8.9388 -4.9083 -0.6781 15 1 9.3657 -5.7368 -0.1325 16 6 9.7291 -3.8353 -1.0318 17 7 11.0368 -3.9156 -0.9169 18 14 8.9427 -2.2676 -1.6745 19 1 10.0012 -1.2723 -1.9809 20 1 8.1739 -2.5694 -2.9087 21 1 8.0274 -1.7146 -0.6440 22 6 6.6459 -3.8394 -0.3475 23 6 4.2433 -2.3927 0.0068 24 6 3.5523 -1.2026 0.0004 25 1 -0.3634 0.0000 1.0277 26 1 -0.3634 0.8899 -0.5138 27 1 -0.3634 -0.8900 -0.5139 28 1 2.3791 1.5833 -1.0276 29 1 1.6084 2.0283 0.5138 30 1 3.1499 1.1384 0.5139 31 1 0.3826 -2.4071 0.0005 32 1 1.6061 -4.5367 0.0020 33 1 6.3362 -6.8114 -0.8402 34 1 7.0835 -6.2137 0.7059 35 1 7.7518 -4.3157 -2.9648 36 1 11.4410 -4.7002 -0.5142 37 1 7.0830 -3.4880 0.5872 38 1 6.3355 -3.0274 -1.0052 39 1 5.3232 -2.3907 0.0114 40 1 4.0906 -0.2663 -0.0001 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000332036475.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:58:07 Heat of formation + Delta-G solvation = -13.532067 kcal Electronic energy + Delta-G solvation = -23164.329437 eV Core-core repulsion = 19752.472250 eV Total energy + Delta-G solvation = -3411.857188 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.67495 -40.42917 -39.09766 -36.97380 -36.04092 -34.64579 -32.38288 -31.66857 -30.11119 -29.05954 -27.56603 -27.04464 -25.75909 -23.20608 -22.75720 -21.46602 -20.56990 -19.92768 -18.60565 -18.13400 -17.49836 -17.14105 -16.62722 -16.38149 -15.99619 -15.79054 -15.62740 -15.21475 -14.79727 -14.69132 -14.42207 -14.28839 -14.18721 -13.88432 -13.45990 -13.37018 -13.28057 -13.03588 -12.87494 -12.75714 -12.40837 -12.16663 -11.77896 -11.73027 -11.28635 -11.04707 -10.87744 -10.85575 -10.29622 -10.01127 -9.72392 -8.82642 -8.29093 -6.59723 0.04214 0.44849 1.42465 1.48738 1.64218 1.86015 1.89956 2.16562 2.43007 2.90777 2.94139 3.27506 3.63107 3.70224 3.80643 3.93099 4.20271 4.24601 4.31932 4.37998 4.40113 4.51776 4.53291 4.54162 4.58375 4.65600 4.76793 4.82580 4.91841 4.93469 4.97520 5.07502 5.19307 5.32731 5.53322 5.59666 5.71666 5.91521 6.26290 6.40347 6.41988 6.71632 6.94374 7.11582 7.27003 8.52853 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.018862 B = 0.004874 C = 0.004032 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1484.123004 B = 5742.847552 C = 6942.099700 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.082 3.918 2 N -0.631 5.631 3 C 0.081 3.919 4 C 0.241 3.759 5 C -0.208 4.208 6 C -0.019 4.019 7 C -0.218 4.218 8 C 0.572 3.428 9 O -0.602 6.602 10 N -0.631 5.631 11 C 0.123 3.877 12 C 0.192 3.808 13 O -0.573 6.573 14 C -0.621 4.621 15 H 0.033 0.967 16 C -0.006 4.006 17 N -0.921 5.921 18 Si 1.065 2.935 19 H -0.285 1.285 20 H -0.247 1.247 21 H -0.231 1.231 22 C 0.066 3.934 23 C -0.054 4.054 24 C -0.210 4.210 25 H 0.058 0.942 26 H 0.088 0.912 27 H 0.073 0.927 28 H 0.058 0.942 29 H 0.089 0.911 30 H 0.072 0.928 31 H 0.153 0.847 32 H 0.126 0.874 33 H 0.065 0.935 34 H 0.096 0.904 35 H 0.374 0.626 36 H 0.258 0.742 37 H 0.106 0.894 38 H 0.095 0.905 39 H 0.137 0.863 40 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.856 15.479 1.482 25.220 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 N -0.339 5.339 3 C -0.061 4.061 4 C 0.135 3.865 5 C -0.230 4.230 6 C -0.039 4.039 7 C -0.223 4.223 8 C 0.367 3.633 9 O -0.486 6.486 10 N -0.363 5.363 11 C 0.001 3.999 12 C 0.151 3.849 13 O -0.383 6.383 14 C -0.659 4.659 15 H 0.052 0.948 16 C -0.207 4.207 17 N -0.555 5.555 18 Si 0.884 3.116 19 H -0.210 1.210 20 H -0.172 1.172 21 H -0.154 1.154 22 C -0.056 4.056 23 C -0.073 4.073 24 C -0.232 4.232 25 H 0.077 0.923 26 H 0.107 0.893 27 H 0.091 0.909 28 H 0.077 0.923 29 H 0.108 0.892 30 H 0.091 0.909 31 H 0.171 0.829 32 H 0.144 0.856 33 H 0.083 0.917 34 H 0.114 0.886 35 H 0.225 0.775 36 H 0.067 0.933 37 H 0.124 0.876 38 H 0.113 0.887 39 H 0.155 0.845 40 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -20.527 16.136 1.167 26.136 hybrid contribution 0.830 -2.020 0.695 2.292 sum -19.697 14.116 1.862 24.304 Atomic orbital electron populations 1.21910 0.77766 1.04054 1.02281 1.46608 1.06462 1.03136 1.77680 1.21921 0.97810 0.84074 1.02330 1.18155 0.91358 0.86759 0.90271 1.20784 1.00842 0.89848 1.11550 1.21000 0.91886 0.98765 0.92215 1.19537 0.94697 0.91709 1.16357 1.18481 0.80166 0.89638 0.75064 1.90658 1.68254 1.35393 1.54299 1.49960 1.04280 1.11578 1.70529 1.23204 0.84516 0.92885 0.99331 1.20384 0.92340 0.92486 0.79677 1.86368 1.72935 1.59920 1.19036 1.22309 0.94810 1.07028 1.41761 0.94827 1.27317 0.94495 1.04737 0.94163 1.70951 1.11279 1.32798 1.40472 0.83954 0.76149 0.72541 0.78974 1.21046 1.17225 1.15410 1.24698 0.85558 0.93665 1.01641 1.21784 1.00986 0.91373 0.93177 1.20853 0.92448 0.98650 1.11292 0.92300 0.89302 0.90863 0.92303 0.89241 0.90898 0.82939 0.85649 0.91677 0.88611 0.77486 0.93288 0.87617 0.88706 0.84516 0.83087 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.76 10.17 127.77 1.30 2.06 16 2 N -0.63 -9.34 3.39 -747.31 -2.53 -11.88 16 3 C 0.08 0.81 10.17 127.77 1.30 2.11 16 4 C 0.24 5.14 6.55 38.47 0.25 5.39 16 5 C -0.21 -4.73 9.18 22.36 0.21 -4.52 16 6 C -0.02 -0.56 9.58 22.50 0.22 -0.34 16 7 C -0.22 -7.57 5.88 -20.08 -0.12 -7.69 16 8 C 0.57 24.40 7.97 86.69 0.69 25.09 16 9 O -0.60 -29.13 17.10 -4.02 -0.07 -29.20 16 10 N -0.63 -26.69 3.61 -843.44 -3.04 -29.73 16 11 C 0.12 5.49 8.23 86.49 0.71 6.20 16 12 C 0.19 8.80 1.07 -10.88 -0.01 8.79 16 13 O -0.57 -26.37 13.46 -148.98 -2.01 -28.38 16 14 C -0.62 -32.78 9.04 25.60 0.23 -32.55 16 15 H 0.03 1.96 8.05 -2.91 -0.02 1.94 16 16 C -0.01 -0.33 5.44 84.65 0.46 0.13 16 17 N -0.92 -53.18 13.70 21.45 0.29 -52.88 16 18 Si 1.06 41.65 24.65 68.60 1.69 43.35 16 19 H -0.28 -11.52 7.11 99.48 0.71 -10.82 16 20 H -0.25 -8.44 5.75 99.48 0.57 -7.86 16 21 H -0.23 -7.48 6.39 99.48 0.64 -6.85 16 22 C 0.07 2.60 3.24 86.44 0.28 2.88 16 23 C -0.05 -1.61 9.06 22.50 0.20 -1.40 16 24 C -0.21 -4.92 9.18 22.36 0.21 -4.71 16 25 H 0.06 0.48 8.14 -2.39 -0.02 0.46 16 26 H 0.09 0.48 8.07 -2.39 -0.02 0.46 16 27 H 0.07 0.68 6.17 -2.38 -0.01 0.66 16 28 H 0.06 0.54 8.14 -2.39 -0.02 0.52 16 29 H 0.09 0.52 8.07 -2.38 -0.02 0.50 16 30 H 0.07 0.75 6.17 -2.39 -0.01 0.74 16 31 H 0.15 2.54 6.11 -2.91 -0.02 2.52 16 32 H 0.13 3.80 7.67 -2.91 -0.02 3.77 16 33 H 0.06 2.97 8.14 -2.39 -0.02 2.95 16 34 H 0.10 4.09 8.09 -2.39 -0.02 4.07 16 35 H 0.37 15.51 5.86 -74.06 -0.43 15.08 16 36 H 0.26 15.24 8.73 -92.70 -0.81 14.43 16 37 H 0.11 3.93 8.08 -2.39 -0.02 3.91 16 38 H 0.10 3.29 5.08 -2.38 -0.01 3.28 16 39 H 0.14 4.07 3.89 -2.91 -0.01 4.06 16 40 H 0.15 2.71 6.11 -2.91 -0.02 2.69 16 Total: -1.00 -71.42 320.51 0.66 -70.75 By element: Atomic # 1 Polarization: 36.13 SS G_CDS: 0.40 Total: 36.53 kcal Atomic # 6 Polarization: -4.49 SS G_CDS: 5.93 Total: 1.44 kcal Atomic # 7 Polarization: -89.21 SS G_CDS: -5.29 Total: -94.49 kcal Atomic # 8 Polarization: -55.50 SS G_CDS: -2.07 Total: -57.58 kcal Atomic # 14 Polarization: 41.65 SS G_CDS: 1.69 Total: 43.35 kcal Total: -71.42 0.66 -70.75 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000332036475.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.222 kcal (2) G-P(sol) polarization free energy of solvation -71.416 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.194 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.662 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.754 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.532 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds