Wall clock time and date at job start Tue Mar 31 2020 02:35:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.47212 * 2 1 4 4 C 1.50694 * 109.47400 * 239.99406 * 2 1 3 5 5 O 1.21280 * 120.00175 * 358.47476 * 4 2 1 6 6 N 1.34783 * 119.99998 * 178.47039 * 4 2 1 7 7 C 1.47061 * 136.05821 * 4.85099 * 6 4 2 8 8 C 1.53234 * 88.08469 * 207.20058 * 7 6 4 9 9 O 1.42908 * 114.01546 * 87.71343 * 8 7 6 10 10 C 1.50701 * 114.32906 * 220.46735 * 8 7 6 11 11 H 1.07999 * 119.99427 * 98.96803 * 10 8 7 12 12 C 1.37872 * 120.00151 * 278.96813 * 10 8 7 13 13 N 1.31512 * 120.00031 * 6.38598 * 12 10 8 14 14 Si 1.86802 * 120.00096 * 186.38163 * 12 10 8 15 15 H 1.48498 * 109.47024 * 94.99660 * 14 12 10 16 16 H 1.48497 * 109.47120 * 214.99665 * 14 12 10 17 17 H 1.48496 * 109.47020 * 334.99697 * 14 12 10 18 18 C 1.47070 * 136.05510 * 185.22113 * 6 4 2 19 19 C 1.50698 * 109.47041 * 119.99354 * 2 1 3 20 20 C 1.38674 * 120.41961 * 293.60108 * 19 2 1 21 21 C 1.38631 * 118.42195 * 179.97438 * 20 19 2 22 22 C 1.38225 * 119.15796 * 359.97438 * 21 20 19 23 23 N 1.31854 * 120.76697 * 359.97438 * 22 21 20 24 24 C 1.31886 * 121.72424 * 0.04267 * 23 22 21 25 25 H 1.09002 * 109.47253 * 304.84410 * 1 2 3 26 26 H 1.09005 * 109.46546 * 64.84636 * 1 2 3 27 27 H 1.08995 * 109.47043 * 184.84132 * 1 2 3 28 28 H 1.09000 * 109.47375 * 174.26424 * 3 2 1 29 29 H 1.09002 * 109.46808 * 294.25834 * 3 2 1 30 30 H 1.09001 * 109.47569 * 54.25515 * 3 2 1 31 31 H 1.08996 * 113.46695 * 321.93989 * 7 6 4 32 32 H 1.09006 * 113.46739 * 92.37454 * 7 6 4 33 33 H 0.96697 * 113.99319 * 91.25659 * 9 8 7 34 34 H 0.97002 * 120.00329 * 180.02562 * 13 12 10 35 35 H 1.09003 * 113.46258 * 267.62314 * 18 6 4 36 36 H 1.08996 * 113.46702 * 38.06669 * 18 6 4 37 37 H 1.07998 * 120.79145 * 359.97438 * 20 19 2 38 38 H 1.08000 * 120.41955 * 179.71829 * 21 20 19 39 39 H 1.08003 * 119.61695 * 180.02562 * 22 21 20 40 40 H 1.08000 * 119.61515 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7105 -1.2303 5 8 1.2447 -1.1957 -2.0146 6 7 3.3571 -0.8067 -1.4592 7 6 4.5857 -0.4450 -0.7364 8 6 5.2847 -0.3148 -2.0938 9 8 5.1669 0.9800 -2.6869 10 6 6.6886 -0.8619 -2.1241 11 1 6.8754 -1.8477 -2.5235 12 6 7.7344 -0.1038 -1.6420 13 7 7.4945 1.0417 -1.0420 14 14 9.4923 -0.7036 -1.8408 15 1 10.0852 -0.1026 -3.0624 16 1 10.2897 -0.3017 -0.6543 17 1 9.4994 -2.1835 -1.9638 18 6 4.2101 -1.3138 -2.5447 19 6 2.0323 -0.7103 1.2305 20 6 1.8150 -0.1719 2.4899 21 6 2.2945 -0.8603 3.5935 22 6 2.9682 -2.0522 3.4033 23 7 3.1557 -2.5349 2.1907 24 6 2.7137 -1.9071 1.1184 25 1 -0.3634 0.5872 0.8434 26 1 -0.3632 0.4368 -0.9303 27 1 -0.3633 -1.0240 0.0867 28 1 3.1252 1.4442 0.1027 29 1 1.7631 1.9258 -0.9370 30 1 1.5952 1.9852 0.8341 31 1 4.5097 0.4989 -0.1966 32 1 4.9807 -1.2528 -0.1203 33 1 5.8868 1.5839 -2.4589 34 1 8.2303 1.5753 -0.7032 35 1 4.5040 -2.3554 -2.4152 36 1 3.8154 -1.1071 -3.5395 37 1 1.2847 0.7615 2.6081 38 1 2.1473 -0.4682 4.5890 39 1 3.3446 -2.5949 4.2579 40 1 2.8868 -2.3332 0.1412 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000332477535.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:35:30 Heat of formation + Delta-G solvation = -8.405895 kcal Electronic energy + Delta-G solvation = -24237.055297 eV Core-core repulsion = 20825.420397 eV Total energy + Delta-G solvation = -3411.634900 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -40.85033 -39.33440 -37.75113 -35.28060 -34.06854 -32.29261 -31.99631 -30.17614 -28.85492 -27.09155 -25.66593 -25.10909 -23.98081 -23.25687 -21.66531 -19.69186 -18.15147 -17.72065 -17.05922 -16.40761 -16.08500 -15.54199 -15.10238 -14.71361 -14.55148 -14.22876 -13.96378 -13.65769 -13.26454 -13.07831 -12.68170 -12.66587 -12.49688 -12.24600 -12.09297 -11.96079 -11.76014 -11.73426 -11.22270 -11.13592 -11.04943 -10.77505 -10.49376 -10.23385 -9.70591 -9.57541 -9.31194 -9.09933 -8.89085 -8.85973 -8.35495 -7.88688 -6.40863 -4.50699 1.18294 1.35132 3.07839 3.14641 3.23234 3.26231 3.48500 3.89064 4.18514 4.45964 4.63608 4.80326 4.83154 4.94337 5.02256 5.13550 5.16505 5.26134 5.49049 5.58562 5.70553 5.74599 5.86198 5.88846 5.95047 5.96907 6.12790 6.16519 6.26176 6.29589 6.30715 6.42379 6.54694 6.65098 6.76907 6.80983 7.08031 7.60693 7.76510 8.08320 8.45159 8.53339 8.69898 9.20635 9.27594 10.65444 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.016917 B = 0.005943 C = 0.005080 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1654.758702 B = 4710.468325 C = 5510.269590 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.032 4.032 3 C -0.141 4.141 4 C 0.544 3.456 5 O -0.558 6.558 6 N -0.633 5.633 7 C 0.080 3.920 8 C 0.240 3.760 9 O -0.567 6.567 10 C -0.537 4.537 11 H 0.073 0.927 12 C 0.073 3.927 13 N -0.892 5.892 14 Si 0.904 3.096 15 H -0.277 1.277 16 H -0.284 1.284 17 H -0.270 1.270 18 C 0.106 3.894 19 C -0.117 4.117 20 C -0.067 4.067 21 C -0.174 4.174 22 C 0.092 3.908 23 N -0.478 5.478 24 C 0.109 3.891 25 H 0.060 0.940 26 H 0.069 0.931 27 H 0.060 0.940 28 H 0.075 0.925 29 H 0.066 0.934 30 H 0.062 0.938 31 H 0.068 0.932 32 H 0.080 0.920 33 H 0.388 0.612 34 H 0.271 0.729 35 H 0.086 0.914 36 H 0.066 0.934 37 H 0.134 0.866 38 H 0.133 0.867 39 H 0.153 0.847 40 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.235 0.498 8.618 11.930 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.035 4.035 3 C -0.198 4.198 4 C 0.333 3.667 5 O -0.438 6.438 6 N -0.366 5.366 7 C -0.043 4.043 8 C 0.198 3.802 9 O -0.376 6.376 10 C -0.576 4.576 11 H 0.091 0.909 12 C -0.130 4.130 13 N -0.531 5.531 14 Si 0.731 3.269 15 H -0.203 1.203 16 H -0.210 1.210 17 H -0.195 1.195 18 C -0.016 4.016 19 C -0.119 4.119 20 C -0.093 4.093 21 C -0.194 4.194 22 C -0.065 4.065 23 N -0.186 5.186 24 C -0.048 4.048 25 H 0.079 0.921 26 H 0.088 0.912 27 H 0.079 0.921 28 H 0.094 0.906 29 H 0.085 0.915 30 H 0.081 0.919 31 H 0.086 0.914 32 H 0.099 0.901 33 H 0.240 0.760 34 H 0.081 0.919 35 H 0.104 0.896 36 H 0.085 0.915 37 H 0.151 0.849 38 H 0.151 0.849 39 H 0.171 0.829 40 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -8.871 -0.643 7.987 11.954 hybrid contribution 1.085 0.839 0.490 1.457 sum -7.786 0.196 8.477 11.512 Atomic orbital electron populations 1.21659 0.91294 1.02592 1.02270 1.19650 0.97293 0.96336 0.90264 1.21964 1.02944 0.92351 1.02511 1.19700 0.80553 0.79765 0.86660 1.90641 1.54661 1.49641 1.48844 1.49812 1.03467 1.59528 1.23766 1.24184 0.80264 0.99571 1.00232 1.19479 0.91604 0.81941 0.87150 1.86069 1.53005 1.24663 1.73905 1.21379 0.90653 1.03187 1.42332 0.90914 1.25069 1.00043 0.94837 0.93078 1.69668 1.33018 1.13291 1.37112 0.86371 0.83214 0.79414 0.77888 1.20286 1.20988 1.19481 1.23347 0.88165 0.98802 0.91305 1.20582 0.99896 0.96714 0.94739 1.21342 0.97213 0.99229 0.91477 1.22074 1.00624 0.97073 0.99608 1.22782 0.95198 0.93609 0.94958 1.67744 1.18083 1.33848 0.98907 1.22941 0.92566 0.91449 0.97806 0.92148 0.91247 0.92078 0.90635 0.91522 0.91867 0.91404 0.90144 0.75973 0.91883 0.89576 0.91535 0.84852 0.84870 0.82940 0.82786 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.65 7.63 37.16 0.28 -1.37 16 2 C -0.03 -0.50 0.64 -156.82 -0.10 -0.60 16 3 C -0.14 -2.07 7.92 37.16 0.29 -1.78 16 4 C 0.54 10.82 5.37 -10.99 -0.06 10.76 16 5 O -0.56 -12.55 16.72 5.56 0.09 -12.45 16 6 N -0.63 -13.04 2.61 -185.38 -0.48 -13.52 16 7 C 0.08 1.71 5.80 -8.65 -0.05 1.66 16 8 C 0.24 5.61 1.43 -91.39 -0.13 5.48 16 9 O -0.57 -13.94 13.56 -35.23 -0.48 -14.42 16 10 C -0.54 -13.27 8.66 -34.44 -0.30 -13.57 16 11 H 0.07 1.77 7.82 -52.49 -0.41 1.36 16 12 C 0.07 1.79 5.27 -17.82 -0.09 1.70 16 13 N -0.89 -22.19 11.61 55.43 0.64 -21.54 16 14 Si 0.90 19.36 29.54 -169.99 -5.02 14.33 16 15 H -0.28 -5.94 7.11 56.52 0.40 -5.54 16 16 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 17 H -0.27 -5.78 7.11 56.52 0.40 -5.38 16 18 C 0.11 2.28 8.04 -8.50 -0.07 2.21 16 19 C -0.12 -1.78 4.38 -104.48 -0.46 -2.24 16 20 C -0.07 -0.83 9.06 -39.27 -0.36 -1.18 16 21 C -0.17 -1.98 10.11 -39.44 -0.40 -2.38 16 22 C 0.09 1.20 11.18 -17.55 -0.20 1.01 16 23 N -0.48 -7.91 10.36 -13.25 -0.14 -8.04 16 24 C 0.11 1.87 8.45 -17.55 -0.15 1.73 16 25 H 0.06 0.65 8.03 -51.93 -0.42 0.23 16 26 H 0.07 0.98 7.98 -51.93 -0.41 0.57 16 27 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 28 H 0.07 1.27 5.41 -51.93 -0.28 0.99 16 29 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 30 H 0.06 0.73 7.36 -51.93 -0.38 0.35 16 31 H 0.07 1.48 5.75 -51.93 -0.30 1.18 16 32 H 0.08 1.77 7.52 -51.93 -0.39 1.37 16 33 H 0.39 9.62 6.91 45.56 0.31 9.93 16 34 H 0.27 6.45 8.31 -40.82 -0.34 6.11 16 35 H 0.09 1.72 8.10 -51.93 -0.42 1.30 16 36 H 0.07 1.45 8.14 -51.93 -0.42 1.03 16 37 H 0.13 1.30 7.38 -52.49 -0.39 0.92 16 38 H 0.13 1.07 8.06 -52.49 -0.42 0.65 16 39 H 0.15 1.52 8.06 -52.48 -0.42 1.10 16 40 H 0.16 2.92 5.69 -52.49 -0.30 2.62 16 LS Contribution 326.48 15.07 4.92 4.92 Total: -1.00 -28.29 326.48 -6.88 -35.16 By element: Atomic # 1 Polarization: 18.78 SS G_CDS: -4.63 Total: 14.15 kcal Atomic # 6 Polarization: 3.20 SS G_CDS: -1.78 Total: 1.42 kcal Atomic # 7 Polarization: -43.13 SS G_CDS: 0.02 Total: -43.11 kcal Atomic # 8 Polarization: -26.49 SS G_CDS: -0.38 Total: -26.87 kcal Atomic # 14 Polarization: 19.36 SS G_CDS: -5.02 Total: 14.33 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -28.29 -6.88 -35.16 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000332477535.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.759 kcal (2) G-P(sol) polarization free energy of solvation -28.287 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.528 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.878 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.165 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.406 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds