Wall clock time and date at job start Tue Mar 31 2020 02:35:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.47212 * 2 1 4 4 C 1.50694 * 109.47400 * 239.99406 * 2 1 3 5 5 O 1.21280 * 120.00175 * 358.47476 * 4 2 1 6 6 N 1.34783 * 119.99998 * 178.47039 * 4 2 1 7 7 C 1.47061 * 136.05821 * 4.85099 * 6 4 2 8 8 C 1.53234 * 88.08469 * 207.20058 * 7 6 4 9 9 O 1.42908 * 114.01546 * 87.71343 * 8 7 6 10 10 C 1.50701 * 114.32906 * 220.46735 * 8 7 6 11 11 H 1.07999 * 119.99427 * 98.96803 * 10 8 7 12 12 C 1.37872 * 120.00151 * 278.96813 * 10 8 7 13 13 N 1.31512 * 120.00031 * 6.38598 * 12 10 8 14 14 Si 1.86802 * 120.00096 * 186.38163 * 12 10 8 15 15 H 1.48498 * 109.47024 * 94.99660 * 14 12 10 16 16 H 1.48497 * 109.47120 * 214.99665 * 14 12 10 17 17 H 1.48496 * 109.47020 * 334.99697 * 14 12 10 18 18 C 1.47070 * 136.05510 * 185.22113 * 6 4 2 19 19 C 1.50698 * 109.47041 * 119.99354 * 2 1 3 20 20 C 1.38674 * 120.41961 * 293.60108 * 19 2 1 21 21 C 1.38631 * 118.42195 * 179.97438 * 20 19 2 22 22 C 1.38225 * 119.15796 * 359.97438 * 21 20 19 23 23 N 1.31854 * 120.76697 * 359.97438 * 22 21 20 24 24 C 1.31886 * 121.72424 * 0.04267 * 23 22 21 25 25 H 1.09002 * 109.47253 * 304.84410 * 1 2 3 26 26 H 1.09005 * 109.46546 * 64.84636 * 1 2 3 27 27 H 1.08995 * 109.47043 * 184.84132 * 1 2 3 28 28 H 1.09000 * 109.47375 * 174.26424 * 3 2 1 29 29 H 1.09002 * 109.46808 * 294.25834 * 3 2 1 30 30 H 1.09001 * 109.47569 * 54.25515 * 3 2 1 31 31 H 1.08996 * 113.46695 * 321.93989 * 7 6 4 32 32 H 1.09006 * 113.46739 * 92.37454 * 7 6 4 33 33 H 0.96697 * 113.99319 * 91.25659 * 9 8 7 34 34 H 0.97002 * 120.00329 * 180.02562 * 13 12 10 35 35 H 1.09003 * 113.46258 * 267.62314 * 18 6 4 36 36 H 1.08996 * 113.46702 * 38.06669 * 18 6 4 37 37 H 1.07998 * 120.79145 * 359.97438 * 20 19 2 38 38 H 1.08000 * 120.41955 * 179.71829 * 21 20 19 39 39 H 1.08003 * 119.61695 * 180.02562 * 22 21 20 40 40 H 1.08000 * 119.61515 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7105 -1.2303 5 8 1.2447 -1.1957 -2.0146 6 7 3.3571 -0.8067 -1.4592 7 6 4.5857 -0.4450 -0.7364 8 6 5.2847 -0.3148 -2.0938 9 8 5.1669 0.9800 -2.6869 10 6 6.6886 -0.8619 -2.1241 11 1 6.8754 -1.8477 -2.5235 12 6 7.7344 -0.1038 -1.6420 13 7 7.4945 1.0417 -1.0420 14 14 9.4923 -0.7036 -1.8408 15 1 10.0852 -0.1026 -3.0624 16 1 10.2897 -0.3017 -0.6543 17 1 9.4994 -2.1835 -1.9638 18 6 4.2101 -1.3138 -2.5447 19 6 2.0323 -0.7103 1.2305 20 6 1.8150 -0.1719 2.4899 21 6 2.2945 -0.8603 3.5935 22 6 2.9682 -2.0522 3.4033 23 7 3.1557 -2.5349 2.1907 24 6 2.7137 -1.9071 1.1184 25 1 -0.3634 0.5872 0.8434 26 1 -0.3632 0.4368 -0.9303 27 1 -0.3633 -1.0240 0.0867 28 1 3.1252 1.4442 0.1027 29 1 1.7631 1.9258 -0.9370 30 1 1.5952 1.9852 0.8341 31 1 4.5097 0.4989 -0.1966 32 1 4.9807 -1.2528 -0.1203 33 1 5.8868 1.5839 -2.4589 34 1 8.2303 1.5753 -0.7032 35 1 4.5040 -2.3554 -2.4152 36 1 3.8154 -1.1071 -3.5395 37 1 1.2847 0.7615 2.6081 38 1 2.1473 -0.4682 4.5890 39 1 3.3446 -2.5949 4.2579 40 1 2.8868 -2.3332 0.1412 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000332477535.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:35:29 Heat of formation + Delta-G solvation = -27.550135 kcal Electronic energy + Delta-G solvation = -24237.885454 eV Core-core repulsion = 20825.420397 eV Total energy + Delta-G solvation = -3412.465057 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.20131 -40.73908 -39.38818 -36.60708 -35.92801 -34.21493 -33.03640 -31.27226 -30.54727 -28.29239 -27.42081 -26.84020 -25.19267 -24.35368 -23.08145 -21.32000 -19.78932 -19.30033 -18.45713 -17.75935 -17.55126 -17.08769 -16.68785 -16.15769 -16.03026 -15.84763 -15.20470 -14.96861 -14.75066 -14.39236 -14.18721 -14.03192 -13.96194 -13.68627 -13.55618 -13.38233 -13.18224 -13.07244 -12.81066 -12.65907 -12.32886 -12.27176 -12.23862 -11.99545 -11.30583 -10.89504 -10.73759 -10.68426 -10.38622 -10.23212 -9.91580 -9.63122 -8.28873 -6.45045 0.12828 0.34244 1.44097 1.47847 1.51352 1.56996 1.90356 2.39382 2.82875 2.92469 3.26705 3.36258 3.63772 3.65801 3.91578 3.92959 4.03840 4.07315 4.15097 4.26460 4.40923 4.50594 4.60061 4.64957 4.70803 4.72679 4.78034 4.80402 4.82214 4.94749 4.96035 5.13891 5.20927 5.22752 5.26484 5.33077 5.69378 5.76130 5.86725 6.59828 6.81703 7.01336 7.06404 7.28533 7.32095 8.76891 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.016917 B = 0.005943 C = 0.005080 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1654.758702 B = 4710.468325 C = 5510.269590 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.026 4.026 3 C -0.135 4.135 4 C 0.537 3.463 5 O -0.591 6.591 6 N -0.631 5.631 7 C 0.106 3.894 8 C 0.225 3.775 9 O -0.575 6.575 10 C -0.559 4.559 11 H 0.069 0.931 12 C 0.038 3.962 13 N -0.907 5.907 14 Si 0.963 3.037 15 H -0.275 1.275 16 H -0.281 1.281 17 H -0.271 1.271 18 C 0.103 3.897 19 C -0.126 4.126 20 C -0.063 4.063 21 C -0.157 4.157 22 C 0.081 3.919 23 N -0.511 5.511 24 C 0.079 3.921 25 H 0.101 0.899 26 H 0.059 0.941 27 H 0.048 0.952 28 H 0.051 0.949 29 H 0.056 0.944 30 H 0.106 0.894 31 H 0.065 0.935 32 H 0.071 0.929 33 H 0.385 0.615 34 H 0.275 0.725 35 H 0.095 0.905 36 H 0.058 0.942 37 H 0.171 0.829 38 H 0.178 0.822 39 H 0.182 0.818 40 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.760 1.664 11.322 14.412 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.029 4.029 3 C -0.192 4.192 4 C 0.328 3.672 5 O -0.473 6.473 6 N -0.363 5.363 7 C -0.017 4.017 8 C 0.183 3.817 9 O -0.384 6.384 10 C -0.597 4.597 11 H 0.087 0.913 12 C -0.164 4.164 13 N -0.546 5.546 14 Si 0.788 3.212 15 H -0.201 1.201 16 H -0.206 1.206 17 H -0.195 1.195 18 C -0.019 4.019 19 C -0.129 4.129 20 C -0.088 4.088 21 C -0.176 4.176 22 C -0.076 4.076 23 N -0.220 5.220 24 C -0.077 4.077 25 H 0.120 0.880 26 H 0.079 0.921 27 H 0.067 0.933 28 H 0.070 0.930 29 H 0.075 0.925 30 H 0.124 0.876 31 H 0.083 0.917 32 H 0.089 0.911 33 H 0.237 0.763 34 H 0.084 0.916 35 H 0.113 0.887 36 H 0.076 0.924 37 H 0.188 0.812 38 H 0.196 0.804 39 H 0.199 0.801 40 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -9.406 0.524 10.686 14.246 hybrid contribution 1.224 0.447 -0.301 1.337 sum -8.182 0.972 10.385 13.257 Atomic orbital electron populations 1.21674 0.89465 1.02587 1.03589 1.19686 0.98586 0.96324 0.88320 1.21947 1.01568 0.91836 1.03861 1.20656 0.79700 0.79139 0.87700 1.90609 1.55151 1.51061 1.50447 1.49804 1.03882 1.59582 1.23064 1.23756 0.80161 0.98868 0.98894 1.19660 0.91865 0.81661 0.88484 1.86056 1.52874 1.25168 1.74327 1.21570 0.91665 1.03393 1.43033 0.91273 1.25686 1.03078 0.95004 0.92665 1.69727 1.33973 1.13785 1.37118 0.85466 0.79176 0.78785 0.77776 1.20062 1.20600 1.19517 1.23320 0.88205 0.99030 0.91380 1.20529 1.00370 0.96233 0.95729 1.21768 0.96658 1.00274 0.90131 1.22549 0.98077 0.95607 1.01345 1.23400 0.95102 0.94744 0.94402 1.67653 1.19239 1.35061 1.00044 1.22571 0.95071 0.92974 0.97040 0.88030 0.92144 0.93280 0.93000 0.92454 0.87578 0.91699 0.91126 0.76346 0.91581 0.88691 0.92354 0.81194 0.80415 0.80111 0.86127 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.95 7.63 71.98 0.55 -2.40 16 2 C -0.03 -0.78 0.64 -53.68 -0.03 -0.82 16 3 C -0.14 -3.72 7.92 71.98 0.57 -3.15 16 4 C 0.54 21.94 5.37 87.65 0.47 22.41 16 5 O -0.59 -27.53 16.72 -3.03 -0.05 -27.58 16 6 N -0.63 -27.04 2.61 -859.30 -2.24 -29.28 16 7 C 0.11 4.68 5.80 83.09 0.48 5.16 16 8 C 0.22 10.83 1.43 -11.29 -0.02 10.81 16 9 O -0.58 -29.05 13.56 -148.98 -2.02 -31.07 16 10 C -0.56 -28.16 8.66 25.60 0.22 -27.94 16 11 H 0.07 3.44 7.82 -2.91 -0.02 3.42 16 12 C 0.04 1.85 5.27 84.65 0.45 2.29 16 13 N -0.91 -45.18 11.61 21.45 0.25 -44.93 16 14 Si 0.96 39.61 29.54 68.60 2.03 41.64 16 15 H -0.28 -11.18 7.11 99.48 0.71 -10.47 16 16 H -0.28 -11.32 7.11 99.48 0.71 -10.62 16 17 H -0.27 -11.07 7.11 99.48 0.71 -10.36 16 18 C 0.10 4.65 8.04 83.18 0.67 5.32 16 19 C -0.13 -3.67 4.38 -19.77 -0.09 -3.76 16 20 C -0.06 -1.30 9.06 22.47 0.20 -1.09 16 21 C -0.16 -2.86 10.11 22.36 0.23 -2.63 16 22 C 0.08 1.91 11.18 84.69 0.95 2.86 16 23 N -0.51 -16.82 10.36 -195.84 -2.03 -18.85 16 24 C 0.08 2.77 8.45 84.67 0.72 3.49 16 25 H 0.10 1.73 8.03 -2.39 -0.02 1.71 16 26 H 0.06 1.64 7.98 -2.38 -0.02 1.62 16 27 H 0.05 1.36 8.14 -2.39 -0.02 1.34 16 28 H 0.05 1.69 5.41 -2.39 -0.01 1.68 16 29 H 0.06 1.67 8.14 -2.39 -0.02 1.65 16 30 H 0.11 1.98 7.36 -2.39 -0.02 1.97 16 31 H 0.06 2.89 5.75 -2.39 -0.01 2.88 16 32 H 0.07 3.24 7.52 -2.38 -0.02 3.22 16 33 H 0.39 19.55 6.91 -74.06 -0.51 19.04 16 34 H 0.27 12.95 8.31 -92.71 -0.77 12.18 16 35 H 0.10 4.02 8.10 -2.39 -0.02 4.00 16 36 H 0.06 2.67 8.14 -2.39 -0.02 2.65 16 37 H 0.17 2.24 7.38 -2.91 -0.02 2.22 16 38 H 0.18 1.69 8.06 -2.91 -0.02 1.66 16 39 H 0.18 3.04 8.06 -2.91 -0.02 3.01 16 40 H 0.12 4.89 5.69 -2.91 -0.02 4.87 16 Total: -1.00 -63.70 326.48 1.85 -61.84 By element: Atomic # 1 Polarization: 37.12 SS G_CDS: 0.55 Total: 37.67 kcal Atomic # 6 Polarization: 5.18 SS G_CDS: 5.36 Total: 10.54 kcal Atomic # 7 Polarization: -89.03 SS G_CDS: -4.02 Total: -93.05 kcal Atomic # 8 Polarization: -56.57 SS G_CDS: -2.07 Total: -58.64 kcal Atomic # 14 Polarization: 39.61 SS G_CDS: 2.03 Total: 41.64 kcal Total: -63.70 1.85 -61.84 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000332477535.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.294 kcal (2) G-P(sol) polarization free energy of solvation -63.695 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.402 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.852 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.844 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.550 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds