Wall clock time and date at job start Tue Mar 31 2020 03:00:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.37104 * 120.00131 * 2 1 4 4 H 1.07998 * 119.99905 * 204.40032 * 3 2 1 5 5 C 1.38950 * 119.99875 * 24.38896 * 3 2 1 6 6 N 1.31408 * 120.00021 * 12.66479 * 5 3 2 7 7 Si 1.86798 * 119.99653 * 192.66034 * 5 3 2 8 8 H 1.48500 * 109.47422 * 0.02562 * 7 5 3 9 9 H 1.48507 * 109.46795 * 120.00581 * 7 5 3 10 10 H 1.48508 * 109.47164 * 240.00126 * 7 5 3 11 11 C 1.34774 * 120.00220 * 179.97438 * 2 1 3 12 12 O 1.21297 * 120.00379 * 179.97438 * 11 2 1 13 13 C 1.50701 * 119.99903 * 0.02562 * 11 2 1 14 14 C 1.52997 * 109.47409 * 179.97438 * 13 11 2 15 15 N 1.46497 * 109.47383 * 179.97438 * 14 13 11 16 16 C 1.34778 * 120.00297 * 179.97438 * 15 14 13 17 17 O 1.21283 * 119.99849 * 0.02562 * 16 15 14 18 18 C 1.50700 * 120.00271 * 179.97438 * 16 15 14 19 19 C 1.50698 * 109.47237 * 180.02562 * 18 16 15 20 20 C 1.38229 * 119.99939 * 89.99902 * 19 18 16 21 21 C 1.38240 * 120.00327 * 179.97438 * 20 19 18 22 22 C 1.38242 * 119.99593 * 359.97438 * 21 20 19 23 23 C 1.38235 * 119.99808 * 0.27814 * 22 21 20 24 24 C 1.38235 * 120.00030 * 269.97970 * 19 18 16 25 25 H 1.09008 * 109.47116 * 265.86594 * 1 2 3 26 26 H 1.08997 * 109.47374 * 25.86470 * 1 2 3 27 27 H 1.09000 * 109.47146 * 145.86882 * 1 2 3 28 28 H 0.96998 * 119.99950 * 179.97438 * 6 5 3 29 29 H 1.09003 * 109.47490 * 59.99201 * 13 11 2 30 30 H 1.09004 * 109.47088 * 299.99398 * 13 11 2 31 31 H 1.09003 * 109.47278 * 59.99278 * 14 13 11 32 32 H 1.09006 * 109.47184 * 299.99910 * 14 13 11 33 33 H 0.96996 * 119.99879 * 0.02562 * 15 14 13 34 34 H 1.08998 * 109.46745 * 60.00133 * 18 16 15 35 35 H 1.09001 * 109.46791 * 300.00479 * 18 16 15 36 36 H 1.08000 * 120.00172 * 359.97438 * 20 19 18 37 37 H 1.07997 * 120.00536 * 180.02562 * 21 20 19 38 38 H 1.07997 * 119.99632 * 180.02562 * 22 21 20 39 39 H 1.07996 * 119.99625 * 179.72852 * 23 22 21 40 40 H 1.08003 * 120.00135 * 0.02562 * 24 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1505 1.1873 0.0000 4 1 3.1581 1.2291 -0.3864 5 6 1.5487 2.3370 0.4969 6 7 0.4347 2.2492 1.1883 7 14 2.3235 4.0073 0.1821 8 1 3.5638 3.8352 -0.6162 9 1 1.3680 4.8628 -0.5667 10 1 2.6541 4.6519 1.4784 11 6 2.1389 -1.1672 0.0005 12 8 3.3518 -1.1672 0.0001 13 6 1.3854 -2.4723 0.0005 14 6 2.3796 -3.6352 0.0005 15 7 1.6471 -4.9039 0.0011 16 6 2.3209 -6.0711 0.0007 17 8 3.5338 -6.0712 0.0003 18 6 1.5675 -7.3763 0.0019 19 6 2.5467 -8.5217 0.0018 20 6 2.9967 -9.0464 1.1989 21 6 3.8946 -10.0975 1.1989 22 6 4.3421 -10.6242 0.0016 23 6 3.8961 -10.0960 -1.1955 24 6 2.9947 -9.0479 -1.1954 25 1 -0.3634 -0.0741 1.0251 26 1 -0.3634 0.9247 -0.4483 27 1 -0.3633 -0.8507 -0.5766 28 1 0.0149 3.0517 1.5355 29 1 0.7589 -2.5302 -0.8896 30 1 0.7584 -2.5299 0.8904 31 1 3.0063 -3.5774 0.8905 32 1 3.0063 -3.5775 -0.8895 33 1 0.6771 -4.9039 0.0011 34 1 0.9399 -7.4342 -0.8873 35 1 0.9417 -7.4337 0.8926 36 1 2.6469 -8.6352 2.1342 37 1 4.2459 -10.5077 2.1341 38 1 5.0433 -11.4456 0.0016 39 1 4.2490 -10.5046 -2.1308 40 1 2.6432 -8.6379 -2.1307 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000337545857.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:00:01 Heat of formation + Delta-G solvation = -70.340279 kcal Electronic energy + Delta-G solvation = -21740.701993 eV Core-core repulsion = 18326.381417 eV Total energy + Delta-G solvation = -3414.320576 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.07669 -40.38301 -39.55239 -36.84383 -36.05999 -33.88293 -33.68079 -31.80471 -31.73587 -28.74406 -28.02803 -26.53576 -24.46253 -23.44905 -22.59413 -21.48981 -20.48101 -18.89336 -18.08537 -18.01513 -17.60293 -17.07200 -16.76775 -16.38870 -16.24026 -15.87890 -15.67249 -15.57630 -14.68946 -14.67394 -14.29010 -14.22920 -13.86179 -13.59102 -13.34340 -13.28513 -13.14460 -12.91918 -12.86981 -12.63523 -12.43818 -12.17058 -12.12436 -11.97351 -11.83571 -11.03963 -11.01027 -10.39680 -10.12232 -9.76887 -9.66738 -9.60177 -8.35856 -6.00380 0.44413 0.55185 1.34899 1.40496 1.53976 1.67385 2.01269 2.11496 2.31785 2.94287 3.07461 3.19481 3.71347 3.81479 3.98637 4.10878 4.13204 4.17060 4.20228 4.30571 4.43750 4.50143 4.62783 4.68566 4.76546 4.81311 4.90854 4.99878 5.08242 5.16922 5.19382 5.40093 5.42496 5.44742 5.58992 5.65231 5.69830 6.09892 6.16248 6.47552 6.61653 7.16309 7.32245 7.46656 8.02406 8.67214 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.047313 B = 0.002381 C = 0.002338 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 591.666411 B =11758.707211 C =11974.129610 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.118 3.882 2 N -0.463 5.463 3 C -0.345 4.345 4 H 0.066 0.934 5 C -0.002 4.002 6 N -0.894 5.894 7 Si 0.987 3.013 8 H -0.276 1.276 9 H -0.263 1.263 10 H -0.276 1.276 11 C 0.435 3.565 12 O -0.639 6.639 13 C -0.120 4.120 14 C 0.151 3.849 15 N -0.713 5.713 16 C 0.507 3.493 17 O -0.587 6.587 18 C -0.091 4.091 19 C -0.084 4.084 20 C -0.124 4.124 21 C -0.133 4.133 22 C -0.132 4.132 23 C -0.132 4.132 24 C -0.123 4.123 25 H 0.045 0.955 26 H 0.055 0.945 27 H 0.076 0.924 28 H 0.274 0.726 29 H 0.121 0.879 30 H 0.113 0.887 31 H 0.041 0.959 32 H 0.045 0.955 33 H 0.421 0.579 34 H 0.135 0.865 35 H 0.133 0.867 36 H 0.129 0.871 37 H 0.138 0.862 38 H 0.140 0.860 39 H 0.138 0.862 40 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.652 -22.381 -2.481 23.480 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.025 4.025 2 N -0.182 5.182 3 C -0.473 4.473 4 H 0.084 0.916 5 C -0.204 4.204 6 N -0.533 5.533 7 Si 0.811 3.189 8 H -0.201 1.201 9 H -0.188 1.188 10 H -0.202 1.202 11 C 0.224 3.776 12 O -0.527 6.527 13 C -0.161 4.161 14 C 0.026 3.974 15 N -0.367 5.367 16 C 0.295 3.705 17 O -0.467 6.467 18 C -0.130 4.130 19 C -0.084 4.084 20 C -0.142 4.142 21 C -0.151 4.151 22 C -0.150 4.150 23 C -0.150 4.150 24 C -0.141 4.141 25 H 0.064 0.936 26 H 0.074 0.926 27 H 0.095 0.905 28 H 0.084 0.916 29 H 0.139 0.861 30 H 0.131 0.869 31 H 0.059 0.941 32 H 0.064 0.936 33 H 0.259 0.741 34 H 0.152 0.848 35 H 0.151 0.849 36 H 0.147 0.853 37 H 0.155 0.845 38 H 0.158 0.842 39 H 0.156 0.844 40 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -5.401 -22.207 -2.389 22.979 hybrid contribution 0.290 1.287 0.098 1.323 sum -5.111 -20.921 -2.290 21.657 Atomic orbital electron populations 1.21502 0.78917 1.01179 1.00876 1.43880 1.07032 1.04522 1.62768 1.19599 1.00323 0.86306 1.41054 0.91561 1.26054 0.97088 1.02848 0.94385 1.70045 1.19601 1.30719 1.32900 0.84976 0.78337 0.77425 0.78186 1.20124 1.18756 1.20199 1.20979 0.87868 0.86514 0.82196 1.90521 1.16591 1.88169 1.57454 1.21557 0.98446 0.89739 1.06312 1.20605 0.93770 0.82104 1.00898 1.45837 1.11285 1.04436 1.75096 1.21325 0.87893 0.86382 0.74916 1.90739 1.16698 1.88315 1.50934 1.20739 0.97147 0.86919 1.08231 1.19587 0.98693 0.96306 0.93820 1.21284 0.98062 0.96925 0.97944 1.21429 0.97577 0.96919 0.99142 1.21471 1.00245 1.00736 0.92542 1.21430 0.97533 0.96939 0.99129 1.21287 0.98000 0.96911 0.97925 0.93600 0.92620 0.90533 0.91645 0.86122 0.86858 0.94075 0.93621 0.74050 0.84752 0.84900 0.85348 0.84452 0.84219 0.84384 0.85210 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 4.84 8.44 127.77 1.08 5.92 16 2 N -0.46 -23.49 3.01 -658.89 -1.98 -25.47 16 3 C -0.34 -19.71 9.24 84.04 0.78 -18.93 16 4 H 0.07 4.11 7.45 -2.91 -0.02 4.09 16 5 C 0.00 -0.10 5.04 84.93 0.43 0.33 16 6 N -0.89 -46.75 10.83 21.66 0.23 -46.51 16 7 Si 0.99 42.62 29.57 68.60 2.03 44.65 16 8 H -0.28 -12.23 7.11 99.48 0.71 -11.52 16 9 H -0.26 -10.55 7.11 99.48 0.71 -9.85 16 10 H -0.28 -11.68 7.11 99.48 0.71 -10.97 16 11 C 0.43 20.94 7.63 87.66 0.67 21.61 16 12 O -0.64 -37.16 15.70 -3.08 -0.05 -37.21 16 13 C -0.12 -3.80 4.42 29.85 0.13 -3.67 16 14 C 0.15 5.04 4.96 86.38 0.43 5.47 16 15 N -0.71 -16.18 5.56 -463.06 -2.57 -18.75 16 16 C 0.51 13.02 7.82 87.66 0.69 13.70 16 17 O -0.59 -22.15 16.03 -3.04 -0.05 -22.20 16 18 C -0.09 -1.40 5.83 29.10 0.17 -1.23 16 19 C -0.08 -1.72 4.37 -19.87 -0.09 -1.80 16 20 C -0.12 -2.54 9.70 22.27 0.22 -2.33 16 21 C -0.13 -2.51 10.05 22.27 0.22 -2.29 16 22 C -0.13 -2.38 10.05 22.27 0.22 -2.15 16 23 C -0.13 -2.48 10.05 22.27 0.22 -2.25 16 24 C -0.12 -2.49 9.70 22.27 0.22 -2.27 16 25 H 0.05 1.92 7.83 -2.38 -0.02 1.90 16 26 H 0.05 2.48 6.80 -2.39 -0.02 2.46 16 27 H 0.08 2.31 6.61 -2.39 -0.02 2.30 16 28 H 0.27 13.35 8.31 -92.71 -0.77 12.58 16 29 H 0.12 2.94 7.41 -2.39 -0.02 2.92 16 30 H 0.11 3.00 8.11 -2.38 -0.02 2.98 16 31 H 0.04 1.64 8.10 -2.39 -0.02 1.62 16 32 H 0.05 1.78 8.10 -2.38 -0.02 1.76 16 33 H 0.42 5.55 8.47 -92.71 -0.79 4.77 16 34 H 0.13 1.23 8.09 -2.39 -0.02 1.21 16 35 H 0.13 1.26 8.08 -2.39 -0.02 1.24 16 36 H 0.13 2.25 8.06 -2.91 -0.02 2.22 16 37 H 0.14 1.97 8.06 -2.91 -0.02 1.95 16 38 H 0.14 1.80 8.06 -2.91 -0.02 1.77 16 39 H 0.14 1.93 8.06 -2.91 -0.02 1.91 16 40 H 0.13 2.20 8.06 -2.91 -0.02 2.18 16 Total: -1.00 -81.13 342.97 3.26 -77.88 By element: Atomic # 1 Polarization: 17.25 SS G_CDS: 0.26 Total: 17.51 kcal Atomic # 6 Polarization: 4.72 SS G_CDS: 5.38 Total: 10.10 kcal Atomic # 7 Polarization: -86.41 SS G_CDS: -4.32 Total: -90.73 kcal Atomic # 8 Polarization: -59.31 SS G_CDS: -0.10 Total: -59.40 kcal Atomic # 14 Polarization: 42.62 SS G_CDS: 2.03 Total: 44.65 kcal Total: -81.13 3.26 -77.88 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337545857.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.535 kcal (2) G-P(sol) polarization free energy of solvation -81.131 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.596 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.256 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.875 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.340 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds