Wall clock time and date at job start Tue Mar 31 2020 02:39:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52997 * 109.46992 * 2 1 4 4 H 1.09001 * 109.47375 * 305.00364 * 3 2 1 5 5 C 1.50706 * 109.47103 * 185.00428 * 3 2 1 6 6 O 1.21279 * 119.99507 * 240.00171 * 5 3 2 7 7 N 1.34774 * 120.00020 * 59.99861 * 5 3 2 8 8 C 1.46496 * 119.99544 * 180.02562 * 7 5 3 9 9 C 1.50703 * 109.46760 * 180.02562 * 8 7 5 10 10 O 1.21289 * 120.00352 * 359.97438 * 9 8 7 11 11 N 1.34786 * 119.99895 * 179.97438 * 9 8 7 12 12 C 1.37099 * 119.99766 * 179.97438 * 11 9 8 13 13 H 1.08005 * 120.00006 * 0.02562 * 12 11 9 14 14 C 1.38945 * 119.99790 * 180.02562 * 12 11 9 15 15 N 1.31413 * 119.99950 * 180.02562 * 14 12 11 16 16 Si 1.86806 * 120.00212 * 359.97438 * 14 12 11 17 17 H 1.48495 * 109.46782 * 90.00072 * 16 14 12 18 18 H 1.48498 * 109.47283 * 210.00549 * 16 14 12 19 19 H 1.48500 * 109.47007 * 330.00356 * 16 14 12 20 20 C 1.50698 * 109.47342 * 65.00094 * 3 2 1 21 21 C 1.38238 * 119.99510 * 59.72627 * 20 3 2 22 22 C 1.38236 * 119.99716 * 179.79025 * 21 20 3 23 23 C 1.38235 * 119.99863 * 0.44186 * 22 21 20 24 24 C 1.38235 * 120.00068 * 359.80660 * 23 22 21 25 25 C 1.38228 * 120.00139 * 359.97438 * 24 23 22 26 26 H 1.09000 * 109.46966 * 59.99762 * 1 2 3 27 27 H 1.09004 * 109.47134 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.46717 * 299.99642 * 1 2 3 29 29 H 1.08998 * 109.46717 * 240.00358 * 2 1 3 30 30 H 1.08993 * 109.47618 * 120.00236 * 2 1 3 31 31 H 0.96994 * 119.99756 * 0.02562 * 7 5 3 32 32 H 1.08996 * 109.47366 * 299.99598 * 8 7 5 33 33 H 1.08992 * 109.47635 * 60.00246 * 8 7 5 34 34 H 0.97002 * 119.99849 * 0.02562 * 11 9 8 35 35 H 0.97005 * 119.99591 * 179.97438 * 15 14 12 36 36 H 1.07998 * 120.00214 * 359.97438 * 21 20 3 37 37 H 1.08004 * 120.00154 * 180.27420 * 22 21 20 38 38 H 1.08007 * 119.99982 * 179.83552 * 23 22 21 39 39 H 1.08005 * 119.99969 * 180.02562 * 24 23 22 40 40 H 1.08003 * 120.00160 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 -0.8418 5 6 3.5419 1.4443 -0.1239 6 8 4.2216 1.9435 0.7476 7 7 4.1297 0.8912 -1.2033 8 6 5.5897 0.8925 -1.3234 9 6 5.9883 0.2194 -2.6115 10 8 5.1367 -0.2187 -3.3557 11 7 7.2913 0.1043 -2.9366 12 6 7.6540 -0.5085 -4.1081 13 1 6.8955 -0.8986 -4.7708 14 6 8.9972 -0.6276 -4.4430 15 7 9.3448 -1.2146 -5.5662 16 14 10.3089 0.0478 -3.2973 17 1 10.7123 -1.0055 -2.3313 18 1 11.4905 0.4698 -4.0917 19 1 9.7667 1.2160 -2.5580 20 6 1.6413 2.1163 1.2877 21 6 2.0722 1.6048 2.4975 22 6 1.7101 2.2253 3.6785 23 6 0.9097 3.3520 3.6501 24 6 0.4747 3.8604 2.4405 25 6 0.8404 3.2426 1.2593 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8899 31 1 3.5860 0.4922 -1.9004 32 1 5.9534 1.9200 -1.3232 33 1 6.0241 0.3532 -0.4817 34 1 7.9725 0.4544 -2.3412 35 1 10.2825 -1.2974 -5.8001 36 1 2.6941 0.7221 2.5199 37 1 2.0504 1.8283 4.6235 38 1 0.6246 3.8353 4.5730 39 1 -0.1504 4.7410 2.4183 40 1 0.5002 3.6396 0.3143 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000343508009.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:39:58 Heat of formation + Delta-G solvation = -79.151503 kcal Electronic energy + Delta-G solvation = -22319.095829 eV Core-core repulsion = 18904.393170 eV Total energy + Delta-G solvation = -3414.702660 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.51216 -40.41298 -39.43347 -36.30395 -36.08738 -35.29077 -33.84203 -31.77374 -31.49047 -30.01962 -27.92863 -26.05020 -23.86202 -23.13054 -22.51579 -21.48634 -20.93174 -20.43228 -18.52255 -17.92057 -17.37259 -16.94379 -16.78789 -16.58572 -16.19381 -15.81029 -15.44745 -15.25617 -15.12375 -14.88071 -14.35478 -14.19432 -14.03700 -13.98929 -13.70260 -13.41657 -13.22239 -12.98068 -12.88579 -12.45979 -12.39263 -12.02527 -12.01675 -11.69578 -11.61049 -11.59371 -10.88540 -10.66914 -10.34682 -10.18086 -9.72632 -9.57542 -8.46670 -6.08618 0.47435 0.58628 1.29916 1.32757 1.42618 1.56530 1.78437 2.02631 2.19311 2.84568 2.99310 3.09568 3.54691 3.71291 3.93920 4.03087 4.10600 4.21857 4.26514 4.33658 4.38826 4.39179 4.49176 4.57696 4.70256 4.77743 4.89861 5.07301 5.15640 5.21246 5.22359 5.25201 5.40129 5.47495 5.62324 5.68245 5.75052 5.87093 6.17357 6.46505 6.49970 6.77113 7.14228 7.28712 7.76576 8.69745 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.029112 B = 0.003089 C = 0.002894 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 961.577556 B = 9062.799509 C = 9671.795458 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.112 4.112 3 C -0.061 4.061 4 H 0.123 0.877 5 C 0.518 3.482 6 O -0.569 6.569 7 N -0.709 5.709 8 C 0.117 3.883 9 C 0.445 3.555 10 O -0.613 6.613 11 N -0.578 5.578 12 C -0.331 4.331 13 H 0.064 0.936 14 C -0.007 4.007 15 N -0.925 5.925 16 Si 0.958 3.042 17 H -0.256 1.256 18 H -0.273 1.273 19 H -0.234 1.234 20 C -0.072 4.072 21 C -0.105 4.105 22 C -0.134 4.134 23 C -0.127 4.127 24 C -0.128 4.128 25 C -0.122 4.122 26 H 0.066 0.934 27 H 0.064 0.936 28 H 0.055 0.945 29 H 0.073 0.927 30 H 0.064 0.936 31 H 0.414 0.586 32 H 0.101 0.899 33 H 0.103 0.897 34 H 0.391 0.609 35 H 0.281 0.719 36 H 0.107 0.893 37 H 0.132 0.868 38 H 0.142 0.858 39 H 0.144 0.856 40 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.296 8.660 18.332 26.012 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.150 4.150 3 C -0.082 4.082 4 H 0.141 0.859 5 C 0.306 3.694 6 O -0.447 6.447 7 N -0.363 5.363 8 C -0.010 4.010 9 C 0.233 3.767 10 O -0.499 6.499 11 N -0.218 5.218 12 C -0.460 4.460 13 H 0.082 0.918 14 C -0.208 4.208 15 N -0.565 5.565 16 Si 0.778 3.222 17 H -0.181 1.181 18 H -0.198 1.198 19 H -0.157 1.157 20 C -0.073 4.073 21 C -0.123 4.123 22 C -0.152 4.152 23 C -0.145 4.145 24 C -0.146 4.146 25 C -0.140 4.140 26 H 0.085 0.915 27 H 0.083 0.917 28 H 0.074 0.926 29 H 0.092 0.908 30 H 0.082 0.918 31 H 0.252 0.748 32 H 0.119 0.881 33 H 0.121 0.879 34 H 0.227 0.773 35 H 0.091 0.909 36 H 0.125 0.875 37 H 0.150 0.850 38 H 0.159 0.841 39 H 0.162 0.838 40 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -16.197 8.638 18.282 25.908 hybrid contribution 1.099 -0.236 -0.387 1.189 sum -15.098 8.402 17.896 24.876 Atomic orbital electron populations 1.21715 0.93316 1.02550 1.02508 1.21557 0.98109 0.92383 1.02928 1.20399 0.89852 0.99661 0.98265 0.85910 1.20971 0.91320 0.76684 0.80461 1.90688 1.66367 1.46638 1.41056 1.45757 1.06573 1.60072 1.23934 1.20869 0.82906 1.02206 0.95049 1.20499 0.82704 0.84334 0.89182 1.90525 1.50475 1.54279 1.54587 1.41946 1.06585 1.53008 1.20301 1.19033 0.93540 1.35521 0.97912 0.91764 1.26054 0.99617 0.96746 0.98336 1.69781 1.19220 1.43012 1.24505 0.85453 0.77984 0.80090 0.78648 1.18086 1.19806 1.15723 1.19361 0.98315 0.96326 0.93285 1.20985 0.98548 1.00018 0.92741 1.21354 0.98811 0.96792 0.98219 1.21451 0.97787 0.96253 0.99007 1.21409 1.00479 1.00500 0.92177 1.21279 0.98200 0.94877 0.99611 0.91503 0.91674 0.92578 0.90836 0.91763 0.74798 0.88094 0.87938 0.77275 0.90909 0.87504 0.84965 0.84054 0.83834 0.84528 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.16 9.73 71.98 0.70 -1.46 16 2 C -0.11 -2.10 5.24 30.59 0.16 -1.94 16 3 C -0.06 -1.29 2.38 -12.29 -0.03 -1.32 16 4 H 0.12 2.15 7.88 -2.39 -0.02 2.13 16 5 C 0.52 14.67 7.03 87.66 0.62 15.29 16 6 O -0.57 -19.50 15.13 -3.02 -0.05 -19.55 16 7 N -0.71 -21.14 5.39 -466.80 -2.52 -23.66 16 8 C 0.12 3.81 6.15 85.63 0.53 4.34 16 9 C 0.45 19.21 7.85 87.66 0.69 19.90 16 10 O -0.61 -31.12 15.24 -3.06 -0.05 -31.16 16 11 N -0.58 -26.46 5.09 -306.97 -1.56 -28.02 16 12 C -0.33 -18.70 10.16 84.04 0.85 -17.85 16 13 H 0.06 4.28 7.39 -2.91 -0.02 4.26 16 14 C -0.01 -0.40 5.50 84.92 0.47 0.06 16 15 N -0.93 -54.20 13.96 21.66 0.30 -53.90 16 16 Si 0.96 38.03 27.74 68.60 1.90 39.93 16 17 H -0.26 -9.70 7.11 99.48 0.71 -8.99 16 18 H -0.27 -10.77 7.11 99.48 0.71 -10.06 16 19 H -0.23 -7.95 6.52 99.48 0.65 -7.30 16 20 C -0.07 -1.59 3.37 -19.87 -0.07 -1.66 16 21 C -0.10 -2.44 7.88 22.27 0.18 -2.26 16 22 C -0.13 -2.65 10.05 22.27 0.22 -2.43 16 23 C -0.13 -2.16 10.05 22.27 0.22 -1.93 16 24 C -0.13 -2.12 10.05 22.27 0.22 -1.90 16 25 C -0.12 -2.28 9.67 22.27 0.22 -2.06 16 26 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 27 H 0.06 0.89 8.14 -2.38 -0.02 0.88 16 28 H 0.06 0.87 7.38 -2.39 -0.02 0.86 16 29 H 0.07 1.41 7.43 -2.39 -0.02 1.40 16 30 H 0.06 1.27 7.21 -2.39 -0.02 1.26 16 31 H 0.41 12.30 6.80 -92.71 -0.63 11.67 16 32 H 0.10 3.02 8.14 -2.39 -0.02 3.00 16 33 H 0.10 3.03 8.14 -2.39 -0.02 3.01 16 34 H 0.39 15.07 5.76 -92.71 -0.53 14.54 16 35 H 0.28 15.05 8.31 -92.70 -0.77 14.28 16 36 H 0.11 2.62 7.48 -2.91 -0.02 2.60 16 37 H 0.13 2.12 8.06 -2.91 -0.02 2.10 16 38 H 0.14 1.65 8.06 -2.91 -0.02 1.62 16 39 H 0.14 1.61 8.06 -2.91 -0.02 1.59 16 40 H 0.14 1.99 7.95 -2.91 -0.02 1.97 16 Total: -1.00 -72.77 338.70 2.85 -69.91 By element: Atomic # 1 Polarization: 41.83 SS G_CDS: -0.16 Total: 41.67 kcal Atomic # 6 Polarization: -0.20 SS G_CDS: 4.98 Total: 4.78 kcal Atomic # 7 Polarization: -101.80 SS G_CDS: -3.78 Total: -105.58 kcal Atomic # 8 Polarization: -50.62 SS G_CDS: -0.09 Total: -50.71 kcal Atomic # 14 Polarization: 38.03 SS G_CDS: 1.90 Total: 39.93 kcal Total: -72.77 2.85 -69.91 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343508009.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.241 kcal (2) G-P(sol) polarization free energy of solvation -72.765 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.006 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.855 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.910 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.152 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds