Wall clock time and date at job start Tue Mar 31 2020 02:50:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09000 * 109.47050 * 2 1 4 4 C 1.52999 * 109.46623 * 239.99904 * 2 1 3 5 5 C 1.50704 * 109.47295 * 65.00435 * 4 2 1 6 6 O 1.21279 * 119.99596 * 359.97438 * 5 4 2 7 7 N 1.34778 * 120.00129 * 179.97438 * 5 4 2 8 8 C 1.46502 * 119.99830 * 179.97438 * 7 5 4 9 9 C 1.50702 * 109.46864 * 179.97438 * 8 7 5 10 10 O 1.21295 * 119.99869 * 0.02562 * 9 8 7 11 11 N 1.34769 * 119.99980 * 180.02562 * 9 8 7 12 12 C 1.37097 * 120.00302 * 180.02562 * 11 9 8 13 13 H 1.07994 * 119.99870 * 359.97438 * 12 11 9 14 14 C 1.38954 * 120.00110 * 180.02562 * 12 11 9 15 15 N 1.31413 * 119.99761 * 359.97438 * 14 12 11 16 16 Si 1.86803 * 119.99787 * 179.97438 * 14 12 11 17 17 H 1.48497 * 109.47191 * 0.02562 * 16 14 12 18 18 H 1.48496 * 109.47013 * 120.00138 * 16 14 12 19 19 H 1.48502 * 109.46964 * 240.00001 * 16 14 12 20 20 C 1.50697 * 109.47239 * 120.00336 * 2 1 3 21 21 C 1.38232 * 120.00067 * 59.72133 * 20 2 1 22 22 C 1.38245 * 119.99835 * 179.78890 * 21 20 2 23 23 C 1.38233 * 119.99658 * 0.44465 * 22 21 20 24 24 C 1.38230 * 120.00309 * 359.81021 * 23 22 21 25 25 C 1.38230 * 120.00189 * 359.97438 * 24 23 22 26 26 H 1.09001 * 109.47002 * 299.99734 * 1 2 3 27 27 H 1.08993 * 109.46955 * 60.00171 * 1 2 3 28 28 H 1.09000 * 109.47050 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.46738 * 184.99930 * 4 2 1 30 30 H 1.08994 * 109.47465 * 305.00017 * 4 2 1 31 31 H 0.97003 * 119.99614 * 359.97438 * 7 5 4 32 32 H 1.08990 * 109.47208 * 300.00469 * 8 7 5 33 33 H 1.09003 * 109.46329 * 60.00266 * 8 7 5 34 34 H 0.97006 * 119.99789 * 0.02562 * 11 9 8 35 35 H 0.97005 * 119.99496 * 180.02562 * 15 14 12 36 36 H 1.07998 * 120.00648 * 0.02562 * 21 20 2 37 37 H 1.07993 * 119.99881 * 180.27524 * 22 21 20 38 38 H 1.08003 * 119.99588 * 179.83531 * 23 22 21 39 39 H 1.08007 * 119.99922 * 180.02562 * 24 23 22 40 40 H 1.08000 * 120.00524 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0399 -0.7213 -1.2493 5 6 1.6413 0.0571 -2.4766 6 8 1.0110 1.0870 -2.3633 7 7 1.9852 -0.3914 -3.7002 8 6 1.5972 0.3650 -4.8933 9 6 2.1006 -0.3448 -6.1238 10 8 2.7219 -1.3808 -6.0147 11 7 1.8604 0.1716 -7.3452 12 6 2.3179 -0.4743 -8.4646 13 1 2.8711 -1.3967 -8.3676 14 6 2.0707 0.0584 -9.7239 15 7 1.3980 1.1811 -9.8419 16 14 2.6948 -0.8214 -11.2491 17 1 3.4172 -2.0553 -10.8481 18 1 1.5455 -1.1814 -12.1178 19 1 3.6171 0.0730 -11.9939 20 6 2.0324 -0.7105 1.2304 21 6 1.6937 -2.0322 1.4520 22 6 2.1582 -2.6852 2.5785 23 6 2.9537 -2.0136 3.4879 24 6 3.2880 -0.6904 3.2690 25 6 2.8273 -0.0387 2.1403 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8899 28 1 -0.3633 -1.0277 -0.0005 29 1 3.1263 -0.7995 -1.2056 30 1 1.6053 -1.7198 -1.2952 31 1 2.4897 -1.2150 -3.7907 32 1 0.5109 0.4426 -4.9370 33 1 2.0313 1.3638 -4.8473 34 1 1.3638 1.0003 -7.4323 35 1 1.2251 1.5528 -10.7211 36 1 1.0695 -2.5559 0.7432 37 1 1.8973 -3.7191 2.7494 38 1 3.3144 -2.5230 4.3693 39 1 3.9099 -0.1658 3.9793 40 1 3.0881 0.9953 1.9694 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000344170180.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:50:22 Heat of formation + Delta-G solvation = -66.963367 kcal Electronic energy + Delta-G solvation = -21706.392826 eV Core-core repulsion = 18292.218683 eV Total energy + Delta-G solvation = -3414.174143 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.12286 -39.23282 -38.15013 -35.22876 -34.39957 -33.66581 -31.40638 -31.11253 -30.12275 -28.66518 -26.79559 -24.52504 -23.58024 -22.70955 -20.71625 -19.86446 -19.44780 -18.11034 -17.43199 -16.74165 -15.89896 -15.57547 -15.52096 -15.18860 -14.98637 -14.47533 -14.28927 -14.03582 -13.83936 -13.58617 -13.42166 -13.24438 -12.79381 -12.53231 -12.21097 -12.13652 -11.70437 -11.65093 -11.48905 -11.26942 -11.15576 -10.94770 -10.76920 -10.42257 -10.34012 -9.66457 -9.61186 -9.11513 -8.88802 -8.78292 -8.64932 -8.11915 -6.53223 -3.95229 1.15949 1.20536 2.82748 3.09099 3.21052 3.26861 3.37312 3.61706 3.72337 4.10110 4.53894 4.57791 4.79944 4.85144 4.86621 4.94354 4.99754 5.13976 5.15423 5.31581 5.33808 5.41000 5.54903 5.65627 5.80762 5.83888 5.88429 5.95081 5.96759 6.05961 6.07336 6.24295 6.31318 6.36311 6.50668 6.70115 6.81425 7.44662 7.80874 7.90685 8.42135 8.46800 9.03051 9.37624 9.85394 10.63716 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.039841 B = 0.002397 C = 0.002325 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 702.621293 B =11676.669942 C =12040.167740 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.035 4.035 3 H 0.087 0.913 4 C -0.133 4.133 5 C 0.511 3.489 6 O -0.547 6.547 7 N -0.708 5.708 8 C 0.108 3.892 9 C 0.428 3.572 10 O -0.598 6.598 11 N -0.550 5.550 12 C -0.305 4.305 13 H 0.106 0.894 14 C 0.025 3.975 15 N -0.894 5.894 16 Si 0.933 3.067 17 H -0.267 1.267 18 H -0.280 1.280 19 H -0.280 1.280 20 C -0.073 4.073 21 C -0.114 4.114 22 C -0.119 4.119 23 C -0.128 4.128 24 C -0.120 4.120 25 C -0.116 4.116 26 H 0.052 0.948 27 H 0.081 0.919 28 H 0.050 0.950 29 H 0.094 0.906 30 H 0.094 0.906 31 H 0.411 0.589 32 H 0.083 0.917 33 H 0.083 0.917 34 H 0.396 0.604 35 H 0.274 0.726 36 H 0.122 0.878 37 H 0.120 0.880 38 H 0.118 0.882 39 H 0.120 0.880 40 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.465 -3.209 22.331 22.565 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.054 4.054 3 H 0.105 0.895 4 C -0.173 4.173 5 C 0.298 3.702 6 O -0.426 6.426 7 N -0.362 5.362 8 C -0.019 4.019 9 C 0.213 3.787 10 O -0.484 6.484 11 N -0.184 5.184 12 C -0.434 4.434 13 H 0.124 0.876 14 C -0.178 4.178 15 N -0.535 5.535 16 Si 0.759 3.241 17 H -0.191 1.191 18 H -0.206 1.206 19 H -0.206 1.206 20 C -0.073 4.073 21 C -0.132 4.132 22 C -0.137 4.137 23 C -0.146 4.146 24 C -0.138 4.138 25 C -0.134 4.134 26 H 0.071 0.929 27 H 0.100 0.900 28 H 0.069 0.931 29 H 0.113 0.887 30 H 0.112 0.888 31 H 0.249 0.751 32 H 0.101 0.899 33 H 0.101 0.899 34 H 0.230 0.770 35 H 0.084 0.916 36 H 0.140 0.860 37 H 0.138 0.862 38 H 0.136 0.864 39 H 0.138 0.862 40 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 0.373 -3.054 22.259 22.470 hybrid contribution 0.258 -0.271 -0.946 1.018 sum 0.631 -3.325 21.312 21.579 Atomic orbital electron populations 1.21969 0.93629 1.01726 1.03293 1.19888 0.96813 0.99149 0.89563 0.89491 1.21728 1.03189 1.00222 0.92121 1.20562 0.79426 0.85776 0.84483 1.90650 1.40428 1.24782 1.86739 1.45770 1.57219 1.28382 1.04862 1.20944 1.00776 0.95604 0.84598 1.19768 0.86530 0.87795 0.84582 1.90497 1.46233 1.25686 1.86020 1.41813 1.48395 1.23855 1.04364 1.19779 1.32861 1.07680 0.83077 0.87627 1.25338 0.96764 0.96199 0.99484 1.69626 1.39331 1.19070 1.25432 0.85753 0.78482 0.79316 0.80513 1.19128 1.20603 1.20597 1.19952 0.96996 0.94229 0.96116 1.21053 1.00077 0.94398 0.97714 1.21150 0.98077 0.99840 0.94670 1.21132 0.99041 0.94942 0.99495 1.21137 1.00070 0.94983 0.97594 1.21120 0.97910 1.00004 0.94400 0.92887 0.90000 0.93142 0.88736 0.88751 0.75138 0.89893 0.89907 0.77037 0.91628 0.86002 0.86189 0.86360 0.86225 0.86027 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.64 8.74 37.16 0.32 -1.32 16 2 C -0.04 -0.38 2.21 -91.77 -0.20 -0.58 16 3 H 0.09 1.01 7.69 -51.93 -0.40 0.61 16 4 C -0.13 -1.45 4.92 -27.88 -0.14 -1.59 16 5 C 0.51 7.55 7.55 -10.98 -0.08 7.47 16 6 O -0.55 -9.52 13.96 5.56 0.08 -9.44 16 7 N -0.71 -11.41 5.53 -61.47 -0.34 -11.75 16 8 C 0.11 1.97 6.15 -5.19 -0.03 1.94 16 9 C 0.43 9.73 7.85 -10.99 -0.09 9.65 16 10 O -0.60 -15.19 15.24 5.54 0.08 -15.11 16 11 N -0.55 -13.58 5.29 -10.96 -0.06 -13.64 16 12 C -0.30 -8.25 9.68 -14.93 -0.14 -8.39 16 13 H 0.11 2.99 7.16 -52.49 -0.38 2.61 16 14 C 0.02 0.65 5.50 -17.47 -0.10 0.56 16 15 N -0.89 -23.82 13.05 55.50 0.72 -23.10 16 16 Si 0.93 20.46 29.55 -169.99 -5.02 15.44 16 17 H -0.27 -5.85 7.11 56.52 0.40 -5.44 16 18 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 19 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 20 C -0.07 -0.72 4.78 -104.62 -0.50 -1.22 16 21 C -0.11 -1.05 8.76 -39.58 -0.35 -1.40 16 22 C -0.12 -1.01 10.05 -39.58 -0.40 -1.41 16 23 C -0.13 -1.05 10.05 -39.59 -0.40 -1.44 16 24 C -0.12 -1.01 10.05 -39.59 -0.40 -1.41 16 25 C -0.12 -1.09 9.67 -39.58 -0.38 -1.47 16 26 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 27 H 0.08 1.09 5.95 -51.93 -0.31 0.78 16 28 H 0.05 0.50 7.38 -51.93 -0.38 0.12 16 29 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 30 H 0.09 0.90 7.58 -51.93 -0.39 0.50 16 31 H 0.41 6.51 7.44 -40.82 -0.30 6.21 16 32 H 0.08 1.45 8.14 -51.93 -0.42 1.03 16 33 H 0.08 1.45 8.14 -51.93 -0.42 1.03 16 34 H 0.40 9.40 7.90 -40.82 -0.32 9.08 16 35 H 0.27 6.86 8.31 -40.82 -0.34 6.53 16 36 H 0.12 0.99 7.16 -52.49 -0.38 0.62 16 37 H 0.12 0.78 8.06 -52.49 -0.42 0.36 16 38 H 0.12 0.72 8.06 -52.48 -0.42 0.30 16 39 H 0.12 0.77 8.06 -52.48 -0.42 0.35 16 40 H 0.12 1.00 7.95 -52.49 -0.42 0.58 16 LS Contribution 341.16 15.07 5.14 5.14 Total: -1.00 -30.86 341.16 -7.65 -38.50 By element: Atomic # 1 Polarization: 19.95 SS G_CDS: -5.37 Total: 14.58 kcal Atomic # 6 Polarization: 2.26 SS G_CDS: -2.88 Total: -0.62 kcal Atomic # 7 Polarization: -48.81 SS G_CDS: 0.33 Total: -48.49 kcal Atomic # 8 Polarization: -24.71 SS G_CDS: 0.16 Total: -24.55 kcal Atomic # 14 Polarization: 20.46 SS G_CDS: -5.02 Total: 15.44 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -30.86 -7.65 -38.50 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344170180.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.460 kcal (2) G-P(sol) polarization free energy of solvation -30.856 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.316 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.648 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.504 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.963 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds