Wall clock time and date at job start Tue Mar 31 2020 03:02:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46492 * 1 3 3 C 1.34782 * 120.00284 * 2 1 4 4 O 1.21283 * 119.99711 * 359.97438 * 3 2 1 5 5 C 1.50696 * 120.00113 * 180.02562 * 3 2 1 6 6 N 1.46506 * 109.47028 * 179.97438 * 5 3 2 7 7 C 1.34769 * 119.99929 * 179.97438 * 6 5 3 8 8 O 1.21284 * 120.00091 * 0.02562 * 7 6 5 9 9 C 1.50703 * 120.00156 * 179.97438 * 7 6 5 10 10 C 1.52995 * 109.47348 * 180.02562 * 9 7 6 11 11 H 1.08994 * 109.47385 * 53.81101 * 10 9 7 12 12 C 1.50707 * 109.46800 * 293.80633 * 10 9 7 13 13 H 1.07996 * 119.99939 * 324.79144 * 12 10 9 14 14 C 1.37876 * 119.99516 * 144.79724 * 12 10 9 15 15 N 1.31517 * 119.99498 * 181.40280 * 14 12 10 16 16 Si 1.86799 * 120.00347 * 1.40222 * 14 12 10 17 17 H 1.48496 * 109.47059 * 267.09616 * 16 14 12 18 18 H 1.48498 * 109.46945 * 27.10055 * 16 14 12 19 19 H 1.48502 * 109.46861 * 147.09689 * 16 14 12 20 20 C 1.50699 * 109.46966 * 173.80920 * 10 9 7 21 21 C 1.38237 * 120.00135 * 66.64777 * 20 10 9 22 22 C 1.38237 * 120.00124 * 179.80917 * 21 20 10 23 23 C 1.38241 * 119.99834 * 0.39586 * 22 21 20 24 24 C 1.38239 * 119.99727 * 359.85702 * 23 22 21 25 25 C 1.38229 * 120.00171 * 359.95425 * 24 23 22 26 26 H 1.08999 * 109.47409 * 180.02562 * 1 2 3 27 27 H 1.09004 * 109.47110 * 300.00158 * 1 2 3 28 28 H 1.09003 * 109.47641 * 59.99852 * 1 2 3 29 29 H 0.97001 * 120.00069 * 180.02562 * 2 1 3 30 30 H 1.08999 * 109.47050 * 60.00281 * 5 3 2 31 31 H 1.08996 * 109.47030 * 299.99926 * 5 3 2 32 32 H 0.97005 * 119.99423 * 0.02562 * 6 5 3 33 33 H 1.09004 * 109.46561 * 60.00018 * 9 7 6 34 34 H 1.09003 * 109.46933 * 300.01124 * 9 7 6 35 35 H 0.96996 * 119.99967 * 179.97438 * 15 14 12 36 36 H 1.07999 * 120.00352 * 359.97438 * 21 20 10 37 37 H 1.07995 * 120.00255 * 180.23001 * 22 21 20 38 38 H 1.07995 * 119.99860 * 179.82910 * 23 22 21 39 39 H 1.08003 * 119.99758 * 179.97438 * 24 23 22 40 40 H 1.08004 * 119.99873 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 1.5325 2.2176 -0.0005 5 6 3.6458 1.1672 -0.0006 6 7 4.1342 2.5484 -0.0011 7 6 5.4592 2.7947 -0.0011 8 8 6.2474 1.8728 -0.0012 9 6 5.9616 4.2155 -0.0022 10 6 7.4916 4.2155 -0.0027 11 1 7.8547 3.6082 -0.8317 12 6 7.9943 3.6428 1.2975 13 1 7.4540 3.8284 2.2140 14 6 9.1439 2.8819 1.3169 15 7 9.5674 2.3592 2.4470 16 14 10.0999 2.5935 -0.2618 17 1 9.6440 1.3288 -0.8925 18 1 9.8665 3.7245 -1.1954 19 1 11.5492 2.4981 0.0476 20 6 7.9939 5.6279 -0.1570 21 6 7.7772 6.5522 0.8478 22 6 8.2414 7.8468 0.7079 23 6 8.9151 8.2192 -0.4403 24 6 9.1272 7.2962 -1.4473 25 6 8.6664 6.0007 -1.3057 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3634 0.5139 -0.8900 29 1 1.9499 -0.8400 -0.0004 30 1 4.0088 0.6536 -0.8908 31 1 4.0095 0.6532 0.8891 32 1 3.5038 3.2857 -0.0006 33 1 5.5982 4.7300 0.8874 34 1 5.5982 4.7286 -0.8926 35 1 10.3760 1.8236 2.4606 36 1 7.2476 6.2623 1.7433 37 1 8.0753 8.5679 1.4945 38 1 9.2753 9.2313 -0.5507 39 1 9.6532 7.5873 -2.3446 40 1 8.8325 5.2795 -2.0924 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000353673376.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:02:08 Heat of formation + Delta-G solvation = -76.965458 kcal Electronic energy + Delta-G solvation = -22575.244277 eV Core-core repulsion = 19160.636411 eV Total energy + Delta-G solvation = -3414.607866 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.20338 -40.39761 -39.66561 -36.04227 -35.74197 -35.21733 -33.70016 -31.58981 -30.95030 -29.66261 -27.84798 -26.27694 -24.18218 -23.26428 -21.82358 -21.59910 -20.85493 -18.99348 -18.82878 -17.72457 -17.44430 -16.98958 -16.95825 -16.47397 -16.13532 -15.86092 -15.62280 -15.31031 -14.85271 -14.61393 -14.45698 -14.15220 -14.06914 -13.85166 -13.66871 -13.29530 -13.28198 -13.09400 -12.84477 -12.62132 -12.04676 -11.88518 -11.76175 -11.47239 -11.19144 -11.03546 -10.74960 -10.54234 -10.26133 -10.03107 -9.59430 -9.28364 -8.19006 -6.16537 0.70359 0.74984 1.36062 1.39941 1.42267 1.46301 1.86014 1.91010 2.44782 2.57159 3.10738 3.26661 3.66370 4.08635 4.15690 4.30879 4.32652 4.33760 4.40955 4.46644 4.47663 4.51109 4.62720 4.67589 4.87049 4.88627 4.94281 5.08985 5.21560 5.33012 5.39953 5.42007 5.45231 5.70993 5.78773 5.84669 6.05373 6.35464 6.39068 6.39280 6.65200 6.82936 7.07333 7.46145 7.48174 8.97995 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.016568 B = 0.004291 C = 0.003691 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1689.627959 B = 6523.693563 C = 7583.191187 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.084 3.916 2 N -0.718 5.718 3 C 0.514 3.486 4 O -0.572 6.572 5 C 0.099 3.901 6 N -0.724 5.724 7 C 0.516 3.484 8 O -0.555 6.555 9 C -0.113 4.113 10 C 0.058 3.942 11 H 0.036 0.964 12 C -0.466 4.466 13 H 0.033 0.967 14 C 0.024 3.976 15 N -0.954 5.954 16 Si 0.921 3.079 17 H -0.287 1.287 18 H -0.224 1.224 19 H -0.298 1.298 20 C -0.064 4.064 21 C -0.119 4.119 22 C -0.127 4.127 23 C -0.140 4.140 24 C -0.125 4.125 25 C -0.150 4.150 26 H 0.113 0.887 27 H 0.051 0.949 28 H 0.054 0.946 29 H 0.421 0.579 30 H 0.107 0.893 31 H 0.096 0.904 32 H 0.413 0.587 33 H 0.093 0.907 34 H 0.104 0.896 35 H 0.258 0.742 36 H 0.107 0.893 37 H 0.137 0.863 38 H 0.146 0.854 39 H 0.141 0.859 40 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.412 1.426 -8.903 17.000 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 N -0.370 5.370 3 C 0.300 3.700 4 O -0.452 6.452 5 C -0.028 4.028 6 N -0.381 5.381 7 C 0.304 3.696 8 O -0.431 6.431 9 C -0.153 4.153 10 C 0.039 3.961 11 H 0.055 0.945 12 C -0.504 4.504 13 H 0.052 0.948 14 C -0.172 4.172 15 N -0.596 5.596 16 Si 0.747 3.253 17 H -0.213 1.213 18 H -0.147 1.147 19 H -0.225 1.225 20 C -0.065 4.065 21 C -0.138 4.138 22 C -0.145 4.145 23 C -0.158 4.158 24 C -0.143 4.143 25 C -0.169 4.169 26 H 0.132 0.868 27 H 0.070 0.930 28 H 0.073 0.927 29 H 0.258 0.742 30 H 0.124 0.876 31 H 0.114 0.886 32 H 0.251 0.749 33 H 0.111 0.889 34 H 0.122 0.878 35 H 0.067 0.933 36 H 0.126 0.874 37 H 0.155 0.845 38 H 0.164 0.836 39 H 0.159 0.841 40 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -14.184 1.381 -8.836 16.768 hybrid contribution 0.648 -0.884 0.044 1.097 sum -13.536 0.497 -8.792 16.148 Atomic orbital electron populations 1.21732 0.77992 1.04544 1.01711 1.45649 1.08775 1.08347 1.74248 1.20570 0.89726 0.84375 0.75346 1.90677 1.70531 1.32630 1.51360 1.21077 0.90492 0.86029 1.05235 1.45731 1.07034 1.08307 1.77048 1.20978 0.81345 0.92526 0.74753 1.90724 1.56089 1.47362 1.48954 1.21599 0.97266 0.92284 1.04169 1.18009 0.91777 0.89905 0.96427 0.94543 1.20811 1.08041 1.28878 0.92695 0.94846 1.25622 0.98451 0.94964 0.98198 1.70036 1.24622 1.36777 1.28163 0.86145 0.76809 0.79882 0.82466 1.21337 1.14693 1.22526 1.20500 0.96743 0.95796 0.93426 1.21022 1.01001 0.93562 0.98165 1.21392 0.98612 0.95867 0.98634 1.21336 1.00199 1.00402 0.93856 1.21343 1.00016 0.92862 1.00066 1.21271 1.00724 0.97154 0.97703 0.86847 0.93019 0.92717 0.74207 0.87555 0.88642 0.74889 0.88882 0.87751 0.93342 0.87440 0.84480 0.83633 0.84149 0.86957 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.99 10.70 127.77 1.37 2.35 16 2 N -0.72 -10.64 5.71 -484.53 -2.77 -13.41 16 3 C 0.51 11.85 7.90 87.65 0.69 12.54 16 4 O -0.57 -17.06 15.67 -3.04 -0.05 -17.11 16 5 C 0.10 2.53 6.15 85.63 0.53 3.06 16 6 N -0.72 -22.54 5.53 -466.79 -2.58 -25.12 16 7 C 0.52 20.54 7.58 87.66 0.66 21.21 16 8 O -0.55 -27.43 15.02 -3.04 -0.05 -27.48 16 9 C -0.11 -4.28 4.96 29.85 0.15 -4.13 16 10 C 0.06 2.68 1.17 -12.29 -0.01 2.66 16 11 H 0.04 1.77 4.94 -2.39 -0.01 1.75 16 12 C -0.47 -26.51 6.88 25.60 0.18 -26.33 16 13 H 0.03 2.09 8.06 -2.91 -0.02 2.07 16 14 C 0.02 1.44 5.47 84.65 0.46 1.90 16 15 N -0.95 -62.39 13.96 21.45 0.30 -62.09 16 16 Si 0.92 47.53 27.00 68.60 1.85 49.38 16 17 H -0.29 -15.14 7.11 99.48 0.71 -14.43 16 18 H -0.22 -10.30 4.72 99.48 0.47 -9.83 16 19 H -0.30 -15.36 7.11 99.48 0.71 -14.65 16 20 C -0.06 -2.64 4.65 -19.87 -0.09 -2.74 16 21 C -0.12 -4.60 8.93 22.27 0.20 -4.40 16 22 C -0.13 -4.02 10.05 22.27 0.22 -3.79 16 23 C -0.14 -3.97 10.05 22.27 0.22 -3.75 16 24 C -0.13 -3.80 10.05 22.27 0.22 -3.58 16 25 C -0.15 -5.55 8.70 22.27 0.19 -5.36 16 26 H 0.11 0.51 8.14 -2.39 -0.02 0.49 16 27 H 0.05 0.73 8.14 -2.39 -0.02 0.72 16 28 H 0.05 0.74 8.14 -2.39 -0.02 0.72 16 29 H 0.42 3.70 8.83 -92.71 -0.82 2.88 16 30 H 0.11 2.48 8.14 -2.39 -0.02 2.46 16 31 H 0.10 2.51 8.14 -2.39 -0.02 2.49 16 32 H 0.41 11.71 7.44 -92.70 -0.69 11.02 16 33 H 0.09 3.37 8.05 -2.38 -0.02 3.35 16 34 H 0.10 3.22 8.14 -2.39 -0.02 3.20 16 35 H 0.26 16.07 8.31 -92.71 -0.77 15.30 16 36 H 0.11 4.30 7.87 -2.91 -0.02 4.28 16 37 H 0.14 3.52 8.06 -2.91 -0.02 3.50 16 38 H 0.15 3.05 8.06 -2.91 -0.02 3.03 16 39 H 0.14 3.33 8.06 -2.91 -0.02 3.31 16 40 H 0.11 4.04 7.12 -2.91 -0.02 4.02 16 Total: -1.00 -81.53 338.71 1.03 -80.51 By element: Atomic # 1 Polarization: 26.36 SS G_CDS: -0.68 Total: 25.68 kcal Atomic # 6 Polarization: -15.35 SS G_CDS: 5.00 Total: -10.35 kcal Atomic # 7 Polarization: -95.57 SS G_CDS: -5.05 Total: -100.62 kcal Atomic # 8 Polarization: -44.50 SS G_CDS: -0.09 Total: -44.59 kcal Atomic # 14 Polarization: 47.53 SS G_CDS: 1.85 Total: 49.38 kcal Total: -81.53 1.03 -80.51 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000353673376.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.542 kcal (2) G-P(sol) polarization free energy of solvation -81.533 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.992 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.026 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.507 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.965 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds