Wall clock time and date at job start Tue Mar 31 2020 02:40:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17407 * 1 3 3 C 1.47196 * 179.97438 * 2 1 4 4 N 1.46501 * 109.47098 * 352.83103 * 3 2 1 5 5 C 1.33881 * 122.75722 * 89.97874 * 4 3 2 6 6 O 1.21228 * 125.40091 * 359.97438 * 5 4 3 7 7 C 1.51316 * 109.20554 * 179.97438 * 5 4 3 8 8 C 1.54226 * 103.55470 * 359.97438 * 7 5 4 9 9 H 1.08997 * 110.60984 * 241.32661 * 8 7 5 10 10 N 1.46903 * 110.60515 * 118.51683 * 8 7 5 11 11 C 1.46852 * 110.99954 * 67.27407 * 10 8 7 12 12 C 1.53036 * 109.52195 * 174.15953 * 11 10 8 13 13 C 1.53114 * 109.27704 * 59.18481 * 12 11 10 14 14 C 1.50700 * 109.52286 * 182.44020 * 13 12 11 15 15 H 1.08002 * 119.99978 * 359.97438 * 14 13 12 16 16 C 1.37874 * 120.00700 * 179.97438 * 14 13 12 17 17 N 1.31520 * 119.99424 * 359.97438 * 16 14 13 18 18 Si 1.86791 * 120.00585 * 179.97438 * 16 14 13 19 19 H 1.48496 * 109.47115 * 89.99961 * 18 16 14 20 20 H 1.48505 * 109.47242 * 209.99903 * 18 16 14 21 21 H 1.48500 * 109.47205 * 330.00168 * 18 16 14 22 22 C 1.53123 * 109.16022 * 302.33971 * 13 12 11 23 23 C 1.46847 * 111.00015 * 303.06595 * 10 8 7 24 24 C 1.33869 * 122.76727 * 269.95180 * 4 3 2 25 25 O 1.21231 * 125.39175 * 0.04514 * 24 4 3 26 26 H 4.40642 * 5.51441 * 180.02562 * 4 1 2 27 27 H 1.09002 * 109.46788 * 232.83063 * 3 2 1 28 28 H 1.08995 * 109.46845 * 112.83434 * 3 2 1 29 29 H 1.08997 * 110.60440 * 241.48314 * 7 5 4 30 30 H 1.09002 * 110.60632 * 118.51292 * 7 5 4 31 31 H 1.09005 * 109.45868 * 54.14252 * 11 10 8 32 32 H 1.09001 * 109.46045 * 294.18168 * 11 10 8 33 33 H 1.08998 * 109.49658 * 179.12191 * 12 11 10 34 34 H 1.08993 * 109.50287 * 299.23716 * 12 11 10 35 35 H 1.08999 * 109.53045 * 62.24891 * 13 12 11 36 36 H 0.97003 * 119.99827 * 180.02562 * 17 16 14 37 37 H 1.09007 * 109.50338 * 297.71985 * 22 13 12 38 38 H 1.09000 * 109.53781 * 177.62225 * 22 13 12 39 39 H 1.08999 * 109.46118 * 305.85363 * 23 10 8 40 40 H 1.08993 * 109.46319 * 65.82384 * 23 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1741 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1350 -1.3696 0.1724 5 6 3.3764 -2.1877 -0.8595 6 8 3.2251 -1.9066 -2.0290 7 6 3.8681 -3.5191 -0.3346 8 6 3.8695 -3.3261 1.1955 9 1 4.8771 -3.4394 1.5955 10 7 2.9504 -4.2757 1.8372 11 6 3.4362 -5.6544 1.6976 12 6 2.5358 -6.5975 2.4986 13 6 1.0996 -6.4876 1.9793 14 6 0.1971 -7.3693 2.8035 15 1 0.6061 -7.9508 3.6166 16 6 -1.1505 -7.4337 2.5197 17 7 -1.6486 -6.7252 1.5300 18 14 -2.2689 -8.5271 3.5409 19 1 -2.8014 -7.7537 4.6913 20 1 -3.3967 -9.0039 2.7006 21 1 -1.4979 -9.6929 4.0426 22 6 0.6347 -5.0329 2.0910 23 6 1.5903 -4.1351 1.3018 24 6 3.3776 -1.9064 1.3744 25 8 3.2272 -1.3441 2.4379 26 1 -1.0498 -0.0005 -0.0001 27 1 3.0090 0.6217 0.8189 28 1 3.0091 0.3996 -0.9471 29 1 4.8755 -3.7254 -0.6958 30 1 3.1856 -4.3196 -0.6200 31 1 4.4570 -5.7197 2.0743 32 1 3.4184 -5.9410 0.6461 33 1 2.8874 -7.6226 2.3821 34 1 2.5640 -6.3200 3.5523 35 1 1.0642 -6.8023 0.9363 36 1 -2.5969 -6.7701 1.3305 37 1 0.6331 -4.7308 3.1384 38 1 -0.3721 -4.9397 1.6838 39 1 1.2703 -3.0970 1.3910 40 1 1.5810 -4.4289 0.2522 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000491698038.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:40:13 Heat of formation + Delta-G solvation = 1.906824 kcal Electronic energy + Delta-G solvation = -23800.677190 eV Core-core repulsion = 20389.489483 eV Total energy + Delta-G solvation = -3411.187707 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.19462 -38.75817 -38.23949 -35.98198 -34.93613 -33.36897 -31.92791 -30.17401 -29.94535 -27.27805 -26.54337 -24.83340 -22.78719 -22.35228 -21.22747 -19.96780 -18.75590 -18.42146 -17.45952 -16.81657 -16.57483 -16.30933 -15.21928 -15.06714 -14.72421 -14.50637 -14.46159 -13.80550 -13.75617 -13.66426 -13.49110 -13.08352 -12.68268 -12.42355 -12.20251 -11.83004 -11.54985 -11.16245 -10.97387 -10.85980 -10.60960 -10.41554 -10.37057 -10.30622 -10.11963 -10.10735 -9.95502 -9.51184 -9.06314 -8.80111 -8.33649 -8.07607 -6.00769 -4.06106 1.43778 1.96161 2.59478 2.70197 3.05600 3.30408 3.37335 3.40134 3.80812 4.13142 4.19574 4.23934 4.40880 4.44432 4.86930 4.98856 5.05825 5.29387 5.32017 5.35462 5.47843 5.50978 5.66050 5.78207 5.92940 5.98979 6.14263 6.42261 6.49963 6.64052 6.74034 6.93606 6.97332 7.20415 7.25601 7.40078 7.45149 7.45428 7.68327 7.74233 7.97117 8.08091 8.43161 8.97347 9.58860 11.05584 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.019698 B = 0.004703 C = 0.004265 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1421.156351 B = 5952.115932 C = 6562.807500 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.225 4.225 3 C 0.215 3.785 4 N -0.574 5.574 5 C 0.535 3.465 6 O -0.483 6.483 7 C -0.198 4.198 8 C 0.054 3.946 9 H 0.132 0.868 10 N -0.508 5.508 11 C 0.059 3.941 12 C -0.107 4.107 13 C 0.047 3.953 14 C -0.511 4.511 15 H 0.055 0.945 16 C 0.061 3.939 17 N -0.892 5.892 18 Si 0.890 3.110 19 H -0.281 1.281 20 H -0.288 1.288 21 H -0.274 1.274 22 C -0.102 4.102 23 C 0.049 3.951 24 C 0.538 3.462 25 O -0.459 6.459 26 H 0.222 0.778 27 H 0.115 0.885 28 H 0.114 0.886 29 H 0.123 0.877 30 H 0.127 0.873 31 H 0.066 0.934 32 H 0.033 0.967 33 H 0.055 0.945 34 H 0.060 0.940 35 H 0.022 0.978 36 H 0.260 0.740 37 H 0.046 0.954 38 H 0.095 0.905 39 H 0.051 0.949 40 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.242 10.223 -4.181 15.760 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.226 4.226 3 C 0.095 3.905 4 N -0.319 5.319 5 C 0.324 3.676 6 O -0.354 6.354 7 C -0.240 4.240 8 C -0.059 4.059 9 H 0.149 0.851 10 N -0.232 5.232 11 C -0.068 4.068 12 C -0.145 4.145 13 C 0.029 3.971 14 C -0.549 4.549 15 H 0.074 0.926 16 C -0.140 4.140 17 N -0.531 5.531 18 Si 0.718 3.282 19 H -0.207 1.207 20 H -0.213 1.213 21 H -0.199 1.199 22 C -0.140 4.140 23 C -0.078 4.078 24 C 0.326 3.674 25 O -0.327 6.327 26 H 0.239 0.761 27 H 0.133 0.867 28 H 0.132 0.868 29 H 0.141 0.859 30 H 0.145 0.855 31 H 0.085 0.915 32 H 0.051 0.949 33 H 0.074 0.926 34 H 0.079 0.921 35 H 0.040 0.960 36 H 0.069 0.931 37 H 0.065 0.935 38 H 0.113 0.887 39 H 0.070 0.930 40 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges 10.903 10.840 -3.791 15.835 hybrid contribution -0.988 -0.609 -0.407 1.230 sum 9.915 10.232 -4.199 14.854 Atomic orbital electron populations 1.25072 0.96003 0.96359 0.99775 1.22993 0.94496 1.03485 1.01638 1.18425 0.84799 0.82170 1.05101 1.46872 1.59799 1.15219 1.09982 1.20819 0.75082 0.86895 0.84757 1.90758 1.49321 1.78912 1.16455 1.23332 1.05989 0.96679 0.97980 1.22605 1.00595 0.90937 0.91723 0.85074 1.62183 1.01636 1.04688 1.54741 1.22237 0.98782 0.86729 0.99052 1.21701 0.97210 0.96107 0.99474 1.18701 0.89612 0.92435 0.96379 1.21174 0.92651 1.25332 1.15717 0.92630 1.24968 0.98211 0.95684 0.95125 1.69868 1.13171 1.40879 1.29218 0.86621 0.80401 0.80947 0.80188 1.20718 1.21340 1.19943 1.21672 0.98823 0.95265 0.98235 1.22458 0.87899 1.00102 0.97327 1.20756 0.75324 0.88884 0.82471 1.90755 1.47328 1.67131 1.27442 0.76077 0.86669 0.86767 0.85916 0.85537 0.91548 0.94880 0.92616 0.92117 0.95999 0.93059 0.93482 0.88697 0.93028 0.95182 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.97 19.25 29.55 0.57 -1.40 16 2 C -0.23 -3.06 13.68 -37.12 -0.51 -3.57 16 3 C 0.22 2.48 6.03 -6.83 -0.04 2.44 16 4 N -0.57 -7.46 2.51 -118.47 -0.30 -7.76 16 5 C 0.54 7.07 8.08 -11.08 -0.09 6.98 16 6 O -0.48 -7.57 17.48 5.60 0.10 -7.47 16 7 C -0.20 -2.20 5.68 -26.94 -0.15 -2.35 16 8 C 0.05 0.68 3.22 -67.92 -0.22 0.46 16 9 H 0.13 1.28 8.12 -51.93 -0.42 0.86 16 10 N -0.51 -8.23 4.69 -226.94 -1.06 -9.30 16 11 C 0.06 0.91 5.14 -3.83 -0.02 0.89 16 12 C -0.11 -2.07 5.32 -26.65 -0.14 -2.21 16 13 C 0.05 1.12 2.16 -91.65 -0.20 0.92 16 14 C -0.51 -13.62 8.56 -34.44 -0.29 -13.92 16 15 H 0.06 1.47 7.74 -52.49 -0.41 1.06 16 16 C 0.06 1.66 5.31 -17.82 -0.09 1.56 16 17 N -0.89 -25.01 11.37 55.43 0.63 -24.37 16 18 Si 0.89 21.05 29.54 -169.99 -5.02 16.03 16 19 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 20 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 21 H -0.27 -6.40 7.11 56.52 0.40 -5.99 16 22 C -0.10 -2.35 5.12 -26.65 -0.14 -2.48 16 23 C 0.05 0.93 4.78 -3.83 -0.02 0.91 16 24 C 0.54 7.69 6.03 -11.09 -0.07 7.62 16 25 O -0.46 -7.88 17.48 5.60 0.10 -7.78 16 26 H 0.22 2.12 7.80 -54.10 -0.42 1.70 16 27 H 0.12 1.14 7.83 -51.93 -0.41 0.73 16 28 H 0.11 1.10 7.83 -51.93 -0.41 0.69 16 29 H 0.12 0.95 8.14 -51.93 -0.42 0.53 16 30 H 0.13 1.58 5.31 -51.93 -0.28 1.31 16 31 H 0.07 0.84 8.11 -51.93 -0.42 0.42 16 32 H 0.03 0.49 7.00 -51.93 -0.36 0.12 16 33 H 0.06 1.03 8.14 -51.93 -0.42 0.60 16 34 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 35 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 36 H 0.26 6.99 8.31 -40.82 -0.34 6.65 16 37 H 0.05 1.14 8.14 -51.92 -0.42 0.72 16 38 H 0.09 2.47 6.17 -51.93 -0.32 2.15 16 39 H 0.05 1.00 6.85 -51.93 -0.36 0.64 16 40 H 0.03 0.57 6.40 -51.93 -0.33 0.23 16 LS Contribution 330.93 15.07 4.99 4.99 Total: -1.00 -31.73 330.93 -7.36 -39.09 By element: Atomic # 1 Polarization: 6.12 SS G_CDS: -5.38 Total: 0.74 kcal Atomic # 6 Polarization: -2.75 SS G_CDS: -1.41 Total: -4.16 kcal Atomic # 7 Polarization: -40.70 SS G_CDS: -0.73 Total: -41.43 kcal Atomic # 8 Polarization: -15.45 SS G_CDS: 0.20 Total: -15.25 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.02 Total: 16.03 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -31.73 -7.36 -39.09 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491698038.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.000 kcal (2) G-P(sol) polarization free energy of solvation -31.731 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.269 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.362 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.093 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.907 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds