Wall clock time and date at job start Tue Mar 31 2020 02:40:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17407 * 1 3 3 C 1.47196 * 179.97438 * 2 1 4 4 N 1.46501 * 109.47098 * 352.83103 * 3 2 1 5 5 C 1.33881 * 122.75722 * 89.97874 * 4 3 2 6 6 O 1.21228 * 125.40091 * 359.97438 * 5 4 3 7 7 C 1.51316 * 109.20554 * 179.97438 * 5 4 3 8 8 C 1.54226 * 103.55470 * 359.97438 * 7 5 4 9 9 H 1.08997 * 110.60984 * 241.32661 * 8 7 5 10 10 N 1.46903 * 110.60515 * 118.51683 * 8 7 5 11 11 C 1.46852 * 110.99954 * 67.27407 * 10 8 7 12 12 C 1.53036 * 109.52195 * 174.15953 * 11 10 8 13 13 C 1.53114 * 109.27704 * 59.18481 * 12 11 10 14 14 C 1.50700 * 109.52286 * 182.44020 * 13 12 11 15 15 H 1.08002 * 119.99978 * 359.97438 * 14 13 12 16 16 C 1.37874 * 120.00700 * 179.97438 * 14 13 12 17 17 N 1.31520 * 119.99424 * 359.97438 * 16 14 13 18 18 Si 1.86791 * 120.00585 * 179.97438 * 16 14 13 19 19 H 1.48496 * 109.47115 * 89.99961 * 18 16 14 20 20 H 1.48505 * 109.47242 * 209.99903 * 18 16 14 21 21 H 1.48500 * 109.47205 * 330.00168 * 18 16 14 22 22 C 1.53123 * 109.16022 * 302.33971 * 13 12 11 23 23 C 1.46847 * 111.00015 * 303.06595 * 10 8 7 24 24 C 1.33869 * 122.76727 * 269.95180 * 4 3 2 25 25 O 1.21231 * 125.39175 * 0.04514 * 24 4 3 26 26 H 4.40642 * 5.51441 * 180.02562 * 4 1 2 27 27 H 1.09002 * 109.46788 * 232.83063 * 3 2 1 28 28 H 1.08995 * 109.46845 * 112.83434 * 3 2 1 29 29 H 1.08997 * 110.60440 * 241.48314 * 7 5 4 30 30 H 1.09002 * 110.60632 * 118.51292 * 7 5 4 31 31 H 1.09005 * 109.45868 * 54.14252 * 11 10 8 32 32 H 1.09001 * 109.46045 * 294.18168 * 11 10 8 33 33 H 1.08998 * 109.49658 * 179.12191 * 12 11 10 34 34 H 1.08993 * 109.50287 * 299.23716 * 12 11 10 35 35 H 1.08999 * 109.53045 * 62.24891 * 13 12 11 36 36 H 0.97003 * 119.99827 * 180.02562 * 17 16 14 37 37 H 1.09007 * 109.50338 * 297.71985 * 22 13 12 38 38 H 1.09000 * 109.53781 * 177.62225 * 22 13 12 39 39 H 1.08999 * 109.46118 * 305.85363 * 23 10 8 40 40 H 1.08993 * 109.46319 * 65.82384 * 23 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1741 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1350 -1.3696 0.1724 5 6 3.3764 -2.1877 -0.8595 6 8 3.2251 -1.9066 -2.0290 7 6 3.8681 -3.5191 -0.3346 8 6 3.8695 -3.3261 1.1955 9 1 4.8771 -3.4394 1.5955 10 7 2.9504 -4.2757 1.8372 11 6 3.4362 -5.6544 1.6976 12 6 2.5358 -6.5975 2.4986 13 6 1.0996 -6.4876 1.9793 14 6 0.1971 -7.3693 2.8035 15 1 0.6061 -7.9508 3.6166 16 6 -1.1505 -7.4337 2.5197 17 7 -1.6486 -6.7252 1.5300 18 14 -2.2689 -8.5271 3.5409 19 1 -2.8014 -7.7537 4.6913 20 1 -3.3967 -9.0039 2.7006 21 1 -1.4979 -9.6929 4.0426 22 6 0.6347 -5.0329 2.0910 23 6 1.5903 -4.1351 1.3018 24 6 3.3776 -1.9064 1.3744 25 8 3.2272 -1.3441 2.4379 26 1 -1.0498 -0.0005 -0.0001 27 1 3.0090 0.6217 0.8189 28 1 3.0091 0.3996 -0.9471 29 1 4.8755 -3.7254 -0.6958 30 1 3.1856 -4.3196 -0.6200 31 1 4.4570 -5.7197 2.0743 32 1 3.4184 -5.9410 0.6461 33 1 2.8874 -7.6226 2.3821 34 1 2.5640 -6.3200 3.5523 35 1 1.0642 -6.8023 0.9363 36 1 -2.5969 -6.7701 1.3305 37 1 0.6331 -4.7308 3.1384 38 1 -0.3721 -4.9397 1.6838 39 1 1.2703 -3.0970 1.3910 40 1 1.5810 -4.4289 0.2522 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000491698038.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:40:13 Heat of formation + Delta-G solvation = -19.166421 kcal Electronic energy + Delta-G solvation = -23801.590995 eV Core-core repulsion = 20389.489483 eV Total energy + Delta-G solvation = -3412.101511 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -43.26105 -39.98246 -39.55215 -37.11852 -36.34218 -34.75653 -33.44958 -31.58778 -31.44043 -28.34611 -27.92169 -26.35689 -24.16222 -23.84973 -22.60654 -21.03757 -20.27206 -19.52264 -18.60767 -18.34845 -17.84511 -17.60669 -16.67375 -16.30830 -16.12953 -15.88440 -15.61558 -14.97292 -14.92956 -14.82022 -14.69720 -14.51311 -14.32790 -13.99116 -13.55439 -13.13220 -13.03284 -12.74675 -12.58171 -12.42966 -12.20313 -12.02229 -11.86744 -11.45798 -11.40500 -11.36166 -11.19711 -11.10081 -10.80936 -10.67741 -10.37891 -9.34662 -8.07879 -6.20163 0.35731 0.95333 1.40969 1.42611 1.51732 1.56238 1.68666 2.02837 2.44334 2.71551 3.09028 3.19910 3.21192 3.29416 3.38245 3.97026 4.07792 4.13192 4.16350 4.18852 4.38327 4.42393 4.47273 4.61819 4.70356 4.76207 4.83512 4.86418 5.01469 5.08591 5.22154 5.32496 5.54759 5.61092 5.64218 5.90622 5.95591 6.11594 6.16937 6.21514 6.41716 6.44773 6.62408 6.92195 7.47974 8.96543 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.019698 B = 0.004703 C = 0.004265 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1421.156351 B = 5952.115932 C = 6562.807500 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.254 4.254 3 C 0.208 3.792 4 N -0.574 5.574 5 C 0.535 3.465 6 O -0.510 6.510 7 C -0.186 4.186 8 C 0.059 3.941 9 H 0.175 0.825 10 N -0.521 5.521 11 C 0.065 3.935 12 C -0.102 4.102 13 C 0.044 3.956 14 C -0.530 4.530 15 H 0.053 0.947 16 C 0.012 3.988 17 N -0.919 5.919 18 Si 0.949 3.051 19 H -0.280 1.280 20 H -0.285 1.285 21 H -0.266 1.266 22 C -0.093 4.093 23 C 0.068 3.932 24 C 0.538 3.462 25 O -0.493 6.493 26 H 0.244 0.756 27 H 0.129 0.871 28 H 0.132 0.868 29 H 0.169 0.831 30 H 0.117 0.883 31 H 0.110 0.890 32 H 0.046 0.954 33 H 0.064 0.936 34 H 0.049 0.951 35 H -0.004 1.004 36 H 0.258 0.742 37 H 0.025 0.975 38 H 0.058 0.942 39 H 0.042 0.958 40 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.460 9.862 -4.262 17.223 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.255 4.255 3 C 0.088 3.912 4 N -0.317 5.317 5 C 0.326 3.674 6 O -0.383 6.383 7 C -0.227 4.227 8 C -0.053 4.053 9 H 0.192 0.808 10 N -0.246 5.246 11 C -0.061 4.061 12 C -0.140 4.140 13 C 0.025 3.975 14 C -0.568 4.568 15 H 0.071 0.929 16 C -0.186 4.186 17 N -0.559 5.559 18 Si 0.775 3.225 19 H -0.206 1.206 20 H -0.211 1.211 21 H -0.191 1.191 22 C -0.131 4.131 23 C -0.060 4.060 24 C 0.326 3.674 25 O -0.363 6.363 26 H 0.261 0.739 27 H 0.147 0.853 28 H 0.150 0.850 29 H 0.187 0.813 30 H 0.135 0.865 31 H 0.128 0.872 32 H 0.064 0.936 33 H 0.082 0.918 34 H 0.068 0.932 35 H 0.014 0.986 36 H 0.067 0.933 37 H 0.044 0.956 38 H 0.076 0.924 39 H 0.060 0.940 40 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges 13.139 10.474 -3.875 17.243 hybrid contribution -1.714 -0.465 -0.380 1.816 sum 11.425 10.009 -4.254 15.774 Atomic orbital electron populations 1.25844 0.97057 0.95786 0.99474 1.23668 0.95657 1.04079 1.02073 1.18707 0.83886 0.81929 1.06650 1.46926 1.59204 1.15779 1.09755 1.21204 0.74330 0.87584 0.84295 1.90752 1.50537 1.79532 1.17505 1.23369 1.08209 0.94721 0.96372 1.22780 1.01262 0.88525 0.92747 0.80827 1.62015 1.00784 1.06085 1.55672 1.22224 0.99619 0.85008 0.99294 1.21568 0.95108 0.98042 0.99296 1.18678 0.92353 0.91918 0.94536 1.21612 0.93542 1.25710 1.15906 0.92908 1.25714 0.99723 0.96998 0.96201 1.70011 1.13246 1.42056 1.30553 0.85690 0.78619 0.79485 0.78673 1.20601 1.21117 1.19052 1.21394 0.98336 0.96212 0.97165 1.22039 0.89193 0.98180 0.96539 1.21093 0.74557 0.89576 0.82150 1.90742 1.48861 1.68077 1.28618 0.73916 0.85291 0.84995 0.81335 0.86533 0.87164 0.93573 0.91758 0.93178 0.98552 0.93256 0.95635 0.92373 0.93989 0.95077 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.21 19.25 74.32 1.43 -2.78 16 2 C -0.25 -6.88 13.68 31.12 0.43 -6.46 16 3 C 0.21 4.61 6.03 84.57 0.51 5.12 16 4 N -0.57 -13.98 2.51 -766.55 -1.93 -15.90 16 5 C 0.53 12.97 8.08 87.99 0.71 13.68 16 6 O -0.51 -15.17 17.48 -2.87 -0.05 -15.22 16 7 C -0.19 -3.41 5.68 30.46 0.17 -3.24 16 8 C 0.06 1.25 3.22 44.78 0.14 1.40 16 9 H 0.17 2.35 8.12 -2.39 -0.02 2.33 16 10 N -0.52 -15.61 4.69 -871.90 -4.09 -19.70 16 11 C 0.06 1.76 5.14 86.32 0.44 2.21 16 12 C -0.10 -3.80 5.32 30.64 0.16 -3.64 16 13 C 0.04 2.10 2.16 -11.46 -0.02 2.07 16 14 C -0.53 -28.75 8.56 25.60 0.22 -28.53 16 15 H 0.05 2.82 7.74 -2.91 -0.02 2.79 16 16 C 0.01 0.65 5.31 84.65 0.45 1.10 16 17 N -0.92 -53.02 11.37 21.45 0.24 -52.78 16 18 Si 0.95 43.68 29.54 68.60 2.03 45.71 16 19 H -0.28 -12.75 7.11 99.48 0.71 -12.05 16 20 H -0.29 -12.95 7.11 99.48 0.71 -12.24 16 21 H -0.27 -11.78 7.11 99.48 0.71 -11.08 16 22 C -0.09 -4.41 5.12 30.65 0.16 -4.25 16 23 C 0.07 2.56 4.78 86.33 0.41 2.98 16 24 C 0.54 14.31 6.03 87.99 0.53 14.84 16 25 O -0.49 -16.40 17.48 -2.88 -0.05 -16.45 16 26 H 0.24 4.60 7.80 -4.43 -0.03 4.57 16 27 H 0.13 2.45 7.83 -2.39 -0.02 2.43 16 28 H 0.13 2.40 7.83 -2.39 -0.02 2.38 16 29 H 0.17 1.61 8.14 -2.39 -0.02 1.59 16 30 H 0.12 2.54 5.31 -2.39 -0.01 2.52 16 31 H 0.11 2.14 8.11 -2.38 -0.02 2.12 16 32 H 0.05 1.17 7.00 -2.39 -0.02 1.15 16 33 H 0.06 2.25 8.14 -2.39 -0.02 2.23 16 34 H 0.05 1.95 8.14 -2.39 -0.02 1.93 16 35 H 0.00 -0.19 8.14 -2.39 -0.02 -0.21 16 36 H 0.26 14.30 8.31 -92.71 -0.77 13.53 16 37 H 0.02 1.27 8.14 -2.38 -0.02 1.25 16 38 H 0.06 3.17 6.17 -2.39 -0.01 3.16 16 39 H 0.04 1.64 6.85 -2.39 -0.02 1.63 16 40 H 0.03 1.16 6.40 -2.39 -0.02 1.14 16 Total: -1.00 -71.61 330.93 2.94 -68.67 By element: Atomic # 1 Polarization: 10.14 SS G_CDS: 1.04 Total: 11.18 kcal Atomic # 6 Polarization: -11.25 SS G_CDS: 5.74 Total: -5.50 kcal Atomic # 7 Polarization: -82.61 SS G_CDS: -5.77 Total: -88.38 kcal Atomic # 8 Polarization: -31.57 SS G_CDS: -0.10 Total: -31.67 kcal Atomic # 14 Polarization: 43.68 SS G_CDS: 2.03 Total: 45.71 kcal Total: -71.61 2.94 -68.67 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491698038.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.504 kcal (2) G-P(sol) polarization free energy of solvation -71.615 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.111 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.945 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.670 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.166 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds