Wall clock time and date at job start Tue Mar 31 2020 02:56:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46904 * 1 3 3 C 1.47013 * 111.00028 * 2 1 4 4 C 1.53093 * 109.26162 * 182.39515 * 3 2 1 5 5 O 1.43023 * 109.25587 * 303.15359 * 4 3 2 6 6 C 1.43018 * 113.77656 * 58.64775 * 5 4 3 7 7 C 1.47011 * 111.00117 * 123.63879 * 2 1 3 8 8 H 1.09000 * 109.50602 * 297.58124 * 7 2 1 9 9 C 1.50699 * 109.50885 * 57.67135 * 7 2 1 10 10 O 1.21278 * 119.99598 * 27.02810 * 9 7 2 11 11 N 1.34773 * 119.99896 * 206.75173 * 9 7 2 12 12 C 1.37145 * 120.00069 * 356.09725 * 11 9 7 13 13 H 1.07992 * 120.00075 * 300.92035 * 12 11 9 14 14 C 1.38890 * 119.99363 * 120.92213 * 12 11 9 15 15 N 1.31423 * 119.99592 * 182.11610 * 14 12 11 16 16 Si 1.86800 * 120.00548 * 2.10967 * 14 12 11 17 17 H 1.48499 * 109.46686 * 95.60366 * 16 14 12 18 18 H 1.48494 * 109.47040 * 215.60331 * 16 14 12 19 19 H 1.48498 * 109.46977 * 335.60419 * 16 14 12 20 20 C 1.39792 * 119.99980 * 176.09623 * 11 9 7 21 21 C 1.38959 * 120.07452 * 5.44566 * 20 11 9 22 22 C 1.38089 * 119.91959 * 179.78663 * 21 20 11 23 23 C 1.38303 * 120.07477 * 0.46755 * 22 21 20 24 24 C 1.38301 * 120.16019 * 359.78372 * 23 22 21 25 25 C 1.38084 * 120.07902 * 359.97438 * 24 23 22 26 26 H 1.08999 * 109.46665 * 301.03880 * 1 2 3 27 27 H 1.08994 * 109.47247 * 61.04390 * 1 2 3 28 28 H 1.09002 * 109.46992 * 181.04584 * 1 2 3 29 29 H 1.09001 * 109.50653 * 302.32908 * 3 2 1 30 30 H 1.09002 * 109.50626 * 62.45910 * 3 2 1 31 31 H 1.08999 * 109.50879 * 63.08619 * 4 3 2 32 32 H 1.08996 * 109.51299 * 183.17349 * 4 3 2 33 33 H 1.08997 * 109.54798 * 181.44372 * 6 5 4 34 34 H 1.08996 * 109.47278 * 61.30270 * 6 5 4 35 35 H 0.96996 * 120.00124 * 179.97438 * 15 14 12 36 36 H 1.07999 * 120.03990 * 0.02562 * 21 20 11 37 37 H 1.08001 * 119.96078 * 180.23106 * 22 21 20 38 38 H 1.08006 * 119.92253 * 179.76458 * 23 22 21 39 39 H 1.08000 * 119.96498 * 179.97438 * 24 23 22 40 40 H 1.07997 * 120.04334 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9959 1.3725 0.0000 4 6 3.5249 1.3265 -0.0604 5 8 4.0175 0.5574 1.0402 6 6 3.5251 -0.7850 1.0719 7 6 1.9959 -0.7603 1.1426 8 1 1.6822 -0.2848 2.0719 9 6 1.4671 -2.1707 1.0955 10 8 1.1588 -2.6674 0.0330 11 7 1.3420 -2.8818 2.2335 12 6 1.7704 -2.3520 3.4238 13 1 2.8036 -2.0623 3.5452 14 6 0.8752 -2.1880 4.4730 15 7 1.2758 -1.6420 5.5993 16 14 -0.8982 -2.7434 4.2833 17 1 -1.0528 -4.1077 4.8489 18 1 -1.7914 -1.8034 5.0069 19 1 -1.2601 -2.7606 2.8431 20 6 0.7757 -4.1594 2.2007 21 6 0.4452 -4.7435 0.9839 22 6 -0.1100 -6.0076 0.9550 23 6 -0.3461 -6.6881 2.1356 24 6 -0.0232 -6.1076 3.3487 25 6 0.5369 -4.8460 3.3850 26 1 -0.3632 0.5299 0.8805 27 1 -0.3633 0.4975 -0.8991 28 1 -0.3633 -1.0275 0.0188 29 1 1.6134 1.9092 -0.8682 30 1 1.6828 1.8825 0.9110 31 1 3.8385 0.8645 -0.9965 32 1 3.9222 2.3399 -0.0038 33 1 3.9217 -1.2984 1.9478 34 1 3.8392 -1.3086 0.1690 35 1 0.6506 -1.5272 6.3319 36 1 0.6259 -4.2112 0.0618 37 1 -0.3637 -6.4637 0.0095 38 1 -0.7839 -7.6751 2.1103 39 1 -0.2093 -6.6417 4.2688 40 1 0.7892 -4.3935 4.3326 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000591703128.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:56:42 Heat of formation + Delta-G solvation = -4.217167 kcal Electronic energy + Delta-G solvation = -24560.594567 eV Core-core repulsion = 21149.141304 eV Total energy + Delta-G solvation = -3411.453263 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.50317 -39.03830 -37.42770 -35.44288 -35.00950 -32.31173 -31.34516 -30.21754 -29.18029 -28.24940 -25.43605 -24.41647 -23.88111 -22.24453 -21.55215 -20.38357 -19.23199 -18.28092 -16.68409 -16.19808 -16.09444 -15.74372 -15.52981 -14.89737 -14.66119 -14.40864 -14.12141 -13.89327 -13.56112 -13.39345 -13.07781 -13.03750 -12.58901 -12.37863 -12.26953 -11.98148 -11.75599 -11.38984 -11.30938 -11.06211 -10.90370 -10.72149 -10.41045 -10.21576 -10.05253 -9.49316 -9.46321 -9.08622 -8.41945 -8.09435 -8.03059 -7.09652 -6.61900 -4.64666 1.97009 2.10120 3.04650 3.16407 3.24268 3.37455 3.75193 3.96892 4.04854 4.43196 4.54739 4.72130 5.08481 5.23348 5.33286 5.39191 5.50266 5.56451 5.61273 5.69803 5.76220 5.78677 5.84174 5.84955 5.96388 6.14564 6.22684 6.25562 6.32943 6.34955 6.49456 6.75417 7.07084 7.11107 7.20068 7.22523 7.26519 7.30963 7.36865 7.65922 7.91793 8.11528 8.70252 8.98006 9.27689 10.38186 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.017898 B = 0.007065 C = 0.006018 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1564.035314 B = 3962.472061 C = 4651.526678 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 N -0.523 5.523 3 C 0.019 3.981 4 C 0.062 3.938 5 O -0.379 6.379 6 C 0.083 3.917 7 C 0.047 3.953 8 H 0.090 0.910 9 C 0.509 3.491 10 O -0.538 6.538 11 N -0.408 5.408 12 C -0.371 4.371 13 H 0.110 0.890 14 C 0.080 3.920 15 N -0.852 5.852 16 Si 0.879 3.121 17 H -0.255 1.255 18 H -0.292 1.292 19 H -0.261 1.261 20 C 0.162 3.838 21 C -0.187 4.187 22 C -0.107 4.107 23 C -0.171 4.171 24 C -0.103 4.103 25 C -0.170 4.170 26 H 0.023 0.977 27 H 0.066 0.934 28 H 0.079 0.921 29 H 0.084 0.916 30 H 0.043 0.957 31 H 0.057 0.943 32 H 0.095 0.905 33 H 0.109 0.891 34 H 0.058 0.942 35 H 0.280 0.720 36 H 0.182 0.818 37 H 0.113 0.887 38 H 0.109 0.891 39 H 0.113 0.887 40 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.673 1.483 -6.927 7.116 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 N -0.248 5.248 3 C -0.109 4.109 4 C -0.015 4.015 5 O -0.297 6.297 6 C 0.006 3.994 7 C -0.065 4.065 8 H 0.108 0.892 9 C 0.300 3.700 10 O -0.419 6.419 11 N -0.118 5.118 12 C -0.497 4.497 13 H 0.128 0.872 14 C -0.130 4.130 15 N -0.484 5.484 16 Si 0.706 3.294 17 H -0.180 1.180 18 H -0.219 1.219 19 H -0.186 1.186 20 C 0.066 3.934 21 C -0.207 4.207 22 C -0.126 4.126 23 C -0.190 4.190 24 C -0.122 4.122 25 C -0.190 4.190 26 H 0.042 0.958 27 H 0.085 0.915 28 H 0.097 0.903 29 H 0.103 0.897 30 H 0.062 0.938 31 H 0.076 0.924 32 H 0.113 0.887 33 H 0.127 0.873 34 H 0.076 0.924 35 H 0.091 0.909 36 H 0.198 0.802 37 H 0.131 0.869 38 H 0.127 0.873 39 H 0.131 0.869 40 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -0.517 1.249 -7.526 7.646 hybrid contribution -1.495 -0.019 0.981 1.788 sum -2.012 1.230 -6.545 6.957 Atomic orbital electron populations 1.22434 0.86832 1.03279 1.00004 1.61978 1.08447 1.12308 1.42106 1.22804 0.96554 0.89995 1.01579 1.22649 0.92313 0.96288 0.90286 1.88012 1.69403 1.24095 1.48216 1.22515 0.90382 0.83525 1.02979 1.22055 0.97035 0.93114 0.94249 0.89201 1.20467 0.79234 0.87025 0.83323 1.90187 1.51373 1.69636 1.30743 1.41445 1.51747 1.10298 1.08337 1.19043 0.97635 1.44525 0.88544 0.87219 1.25618 0.98963 0.93334 0.95118 1.69650 1.36767 1.38225 1.03772 0.86991 0.83267 0.78993 0.80148 1.18034 1.21928 1.18557 1.18555 0.94937 0.86154 0.93736 1.22880 1.01527 0.96095 1.00177 1.21040 0.99183 0.95037 0.97322 1.20923 1.05041 1.00070 0.92948 1.20809 0.99068 0.94856 0.97434 1.21130 1.03246 0.96040 0.98566 0.95818 0.91478 0.90275 0.89749 0.93849 0.92424 0.88685 0.87261 0.92395 0.90939 0.80220 0.86912 0.87313 0.86871 0.84257 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.38 9.25 60.07 0.56 0.94 16 2 N -0.52 -9.20 4.53 -235.97 -1.07 -10.27 16 3 C 0.02 0.27 5.66 -3.71 -0.02 0.25 16 4 C 0.06 0.84 7.01 37.21 0.26 1.11 16 5 O -0.38 -6.53 10.82 -35.23 -0.38 -6.92 16 6 C 0.08 1.52 6.24 37.21 0.23 1.76 16 7 C 0.05 0.93 1.70 -68.75 -0.12 0.81 16 8 H 0.09 1.97 7.20 -51.93 -0.37 1.60 16 9 C 0.51 11.33 5.71 -10.99 -0.06 11.27 16 10 O -0.54 -12.34 11.74 5.56 0.07 -12.27 16 11 N -0.41 -9.67 2.20 -58.98 -0.13 -9.80 16 12 C -0.37 -9.24 7.52 -14.93 -0.11 -9.35 16 13 H 0.11 2.84 6.94 -52.49 -0.36 2.48 16 14 C 0.08 2.04 4.59 -17.49 -0.08 1.95 16 15 N -0.85 -22.44 13.96 55.49 0.77 -21.67 16 16 Si 0.88 20.67 23.50 -169.99 -3.99 16.68 16 17 H -0.26 -5.74 5.99 56.52 0.34 -5.40 16 18 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 19 H -0.26 -6.48 6.60 56.52 0.37 -6.10 16 20 C 0.16 3.78 4.81 -83.69 -0.40 3.38 16 21 C -0.19 -4.05 9.05 -39.37 -0.36 -4.41 16 22 C -0.11 -1.99 10.04 -39.61 -0.40 -2.39 16 23 C -0.17 -3.04 10.04 -39.53 -0.40 -3.43 16 24 C -0.10 -2.00 9.85 -39.61 -0.39 -2.39 16 25 C -0.17 -3.80 5.52 -39.37 -0.22 -4.01 16 26 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 27 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 28 H 0.08 1.54 6.07 -51.93 -0.32 1.22 16 29 H 0.08 0.99 8.14 -51.93 -0.42 0.56 16 30 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 32 H 0.10 1.03 8.14 -51.93 -0.42 0.60 16 33 H 0.11 2.05 6.95 -51.93 -0.36 1.69 16 34 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 35 H 0.28 6.93 8.31 -40.82 -0.34 6.59 16 36 H 0.18 4.02 4.51 -56.34 -0.25 3.77 16 37 H 0.11 1.75 8.06 -52.49 -0.42 1.33 16 38 H 0.11 1.58 8.06 -52.48 -0.42 1.16 16 39 H 0.11 1.90 8.06 -52.49 -0.42 1.48 16 40 H 0.14 3.30 4.45 -52.49 -0.23 3.06 16 LS Contribution 309.06 15.07 4.66 4.66 Total: -1.00 -27.92 309.06 -6.94 -34.86 By element: Atomic # 1 Polarization: 14.60 SS G_CDS: -5.36 Total: 9.25 kcal Atomic # 6 Polarization: -3.01 SS G_CDS: -1.51 Total: -4.51 kcal Atomic # 7 Polarization: -41.31 SS G_CDS: -0.42 Total: -41.74 kcal Atomic # 8 Polarization: -18.87 SS G_CDS: -0.32 Total: -19.19 kcal Atomic # 14 Polarization: 20.67 SS G_CDS: -3.99 Total: 16.68 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -27.92 -6.94 -34.86 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591703128.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.638 kcal (2) G-P(sol) polarization free energy of solvation -27.916 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.722 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.940 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.856 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.217 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds