Wall clock time and date at job start Tue Mar 31 2020 02:56:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46904 * 1 3 3 C 1.47013 * 111.00028 * 2 1 4 4 C 1.53093 * 109.26162 * 182.39515 * 3 2 1 5 5 O 1.43023 * 109.25587 * 303.15359 * 4 3 2 6 6 C 1.43018 * 113.77656 * 58.64775 * 5 4 3 7 7 C 1.47011 * 111.00117 * 123.63879 * 2 1 3 8 8 H 1.09000 * 109.50602 * 297.58124 * 7 2 1 9 9 C 1.50699 * 109.50885 * 57.67135 * 7 2 1 10 10 O 1.21278 * 119.99598 * 27.02810 * 9 7 2 11 11 N 1.34773 * 119.99896 * 206.75173 * 9 7 2 12 12 C 1.37145 * 120.00069 * 356.09725 * 11 9 7 13 13 H 1.07992 * 120.00075 * 300.92035 * 12 11 9 14 14 C 1.38890 * 119.99363 * 120.92213 * 12 11 9 15 15 N 1.31423 * 119.99592 * 182.11610 * 14 12 11 16 16 Si 1.86800 * 120.00548 * 2.10967 * 14 12 11 17 17 H 1.48499 * 109.46686 * 95.60366 * 16 14 12 18 18 H 1.48494 * 109.47040 * 215.60331 * 16 14 12 19 19 H 1.48498 * 109.46977 * 335.60419 * 16 14 12 20 20 C 1.39792 * 119.99980 * 176.09623 * 11 9 7 21 21 C 1.38959 * 120.07452 * 5.44566 * 20 11 9 22 22 C 1.38089 * 119.91959 * 179.78663 * 21 20 11 23 23 C 1.38303 * 120.07477 * 0.46755 * 22 21 20 24 24 C 1.38301 * 120.16019 * 359.78372 * 23 22 21 25 25 C 1.38084 * 120.07902 * 359.97438 * 24 23 22 26 26 H 1.08999 * 109.46665 * 301.03880 * 1 2 3 27 27 H 1.08994 * 109.47247 * 61.04390 * 1 2 3 28 28 H 1.09002 * 109.46992 * 181.04584 * 1 2 3 29 29 H 1.09001 * 109.50653 * 302.32908 * 3 2 1 30 30 H 1.09002 * 109.50626 * 62.45910 * 3 2 1 31 31 H 1.08999 * 109.50879 * 63.08619 * 4 3 2 32 32 H 1.08996 * 109.51299 * 183.17349 * 4 3 2 33 33 H 1.08997 * 109.54798 * 181.44372 * 6 5 4 34 34 H 1.08996 * 109.47278 * 61.30270 * 6 5 4 35 35 H 0.96996 * 120.00124 * 179.97438 * 15 14 12 36 36 H 1.07999 * 120.03990 * 0.02562 * 21 20 11 37 37 H 1.08001 * 119.96078 * 180.23106 * 22 21 20 38 38 H 1.08006 * 119.92253 * 179.76458 * 23 22 21 39 39 H 1.08000 * 119.96498 * 179.97438 * 24 23 22 40 40 H 1.07997 * 120.04334 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9959 1.3725 0.0000 4 6 3.5249 1.3265 -0.0604 5 8 4.0175 0.5574 1.0402 6 6 3.5251 -0.7850 1.0719 7 6 1.9959 -0.7603 1.1426 8 1 1.6822 -0.2848 2.0719 9 6 1.4671 -2.1707 1.0955 10 8 1.1588 -2.6674 0.0330 11 7 1.3420 -2.8818 2.2335 12 6 1.7704 -2.3520 3.4238 13 1 2.8036 -2.0623 3.5452 14 6 0.8752 -2.1880 4.4730 15 7 1.2758 -1.6420 5.5993 16 14 -0.8982 -2.7434 4.2833 17 1 -1.0528 -4.1077 4.8489 18 1 -1.7914 -1.8034 5.0069 19 1 -1.2601 -2.7606 2.8431 20 6 0.7757 -4.1594 2.2007 21 6 0.4452 -4.7435 0.9839 22 6 -0.1100 -6.0076 0.9550 23 6 -0.3461 -6.6881 2.1356 24 6 -0.0232 -6.1076 3.3487 25 6 0.5369 -4.8460 3.3850 26 1 -0.3632 0.5299 0.8805 27 1 -0.3633 0.4975 -0.8991 28 1 -0.3633 -1.0275 0.0188 29 1 1.6134 1.9092 -0.8682 30 1 1.6828 1.8825 0.9110 31 1 3.8385 0.8645 -0.9965 32 1 3.9222 2.3399 -0.0038 33 1 3.9217 -1.2984 1.9478 34 1 3.8392 -1.3086 0.1690 35 1 0.6506 -1.5272 6.3319 36 1 0.6259 -4.2112 0.0618 37 1 -0.3637 -6.4637 0.0095 38 1 -0.7839 -7.6751 2.1103 39 1 -0.2093 -6.6417 4.2688 40 1 0.7892 -4.3935 4.3326 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000591703128.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:56:41 Heat of formation + Delta-G solvation = -23.590187 kcal Electronic energy + Delta-G solvation = -24561.434644 eV Core-core repulsion = 21149.141304 eV Total energy + Delta-G solvation = -3412.293340 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.16132 -40.47763 -38.99397 -37.08729 -36.52682 -34.24139 -32.75863 -31.80033 -30.65361 -29.67469 -27.30625 -25.85755 -25.25938 -23.77526 -23.10949 -21.86321 -20.96950 -19.99883 -18.32586 -17.74760 -17.56550 -17.37129 -17.04142 -16.31258 -16.15804 -16.00466 -15.68489 -15.52230 -15.08907 -14.87657 -14.81166 -14.63915 -14.22948 -14.03902 -13.79388 -13.35630 -13.21901 -13.07470 -12.74969 -12.59096 -12.44793 -12.21799 -12.14995 -11.74828 -11.64552 -11.28868 -10.93024 -10.83677 -10.07470 -9.68686 -9.47348 -8.86571 -8.53991 -6.62366 0.37156 0.50868 1.16980 1.24710 1.33381 1.68040 2.04656 2.18686 2.67131 2.70541 3.00988 3.04625 3.71361 3.80431 3.96066 4.05032 4.11435 4.16310 4.22863 4.27924 4.42648 4.45130 4.54154 4.59780 4.64369 4.65773 4.75895 4.81241 4.85035 4.90574 4.95615 5.20452 5.42804 5.55646 5.63816 5.68364 5.73975 5.91278 5.93454 5.97908 6.08218 6.36377 6.77638 7.14739 7.46196 8.44152 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.017898 B = 0.007065 C = 0.006018 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1564.035314 B = 3962.472061 C = 4651.526678 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.528 5.528 3 C 0.017 3.983 4 C 0.056 3.944 5 O -0.393 6.393 6 C 0.093 3.907 7 C 0.054 3.946 8 H 0.061 0.939 9 C 0.505 3.495 10 O -0.547 6.547 11 N -0.421 5.421 12 C -0.361 4.361 13 H 0.088 0.912 14 C 0.054 3.946 15 N -0.885 5.885 16 Si 0.925 3.075 17 H -0.237 1.237 18 H -0.293 1.293 19 H -0.282 1.282 20 C 0.131 3.869 21 C -0.206 4.206 22 C -0.101 4.101 23 C -0.156 4.156 24 C -0.104 4.104 25 C -0.194 4.194 26 H 0.020 0.980 27 H 0.100 0.900 28 H 0.049 0.951 29 H 0.120 0.880 30 H 0.037 0.963 31 H 0.068 0.932 32 H 0.130 0.870 33 H 0.093 0.907 34 H 0.062 0.938 35 H 0.284 0.716 36 H 0.170 0.830 37 H 0.149 0.851 38 H 0.155 0.845 39 H 0.142 0.858 40 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.693 0.569 -8.401 8.589 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.254 5.254 3 C -0.110 4.110 4 C -0.021 4.021 5 O -0.311 6.311 6 C 0.015 3.985 7 C -0.058 4.058 8 H 0.079 0.921 9 C 0.296 3.704 10 O -0.429 6.429 11 N -0.132 5.132 12 C -0.488 4.488 13 H 0.106 0.894 14 C -0.154 4.154 15 N -0.519 5.519 16 Si 0.752 3.248 17 H -0.161 1.161 18 H -0.221 1.221 19 H -0.208 1.208 20 C 0.035 3.965 21 C -0.225 4.225 22 C -0.119 4.119 23 C -0.175 4.175 24 C -0.123 4.123 25 C -0.214 4.214 26 H 0.038 0.962 27 H 0.119 0.881 28 H 0.067 0.933 29 H 0.138 0.862 30 H 0.055 0.945 31 H 0.086 0.914 32 H 0.148 0.852 33 H 0.111 0.889 34 H 0.081 0.919 35 H 0.095 0.905 36 H 0.186 0.814 37 H 0.167 0.833 38 H 0.172 0.828 39 H 0.159 0.841 40 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -1.534 0.328 -9.001 9.137 hybrid contribution -1.156 0.219 1.317 1.766 sum -2.690 0.546 -7.684 8.159 Atomic orbital electron populations 1.22422 0.86639 1.01735 1.01492 1.62059 1.08769 1.14191 1.40410 1.22992 0.97032 0.88147 1.02857 1.22993 0.91950 0.97582 0.89529 1.87992 1.69585 1.23499 1.50047 1.22292 0.89236 0.84512 1.02420 1.21915 0.98003 0.91831 0.94027 0.92123 1.20829 0.78792 0.87823 0.82910 1.90175 1.51777 1.70171 1.30788 1.41506 1.52456 1.11119 1.08084 1.18820 0.96709 1.44040 0.89242 0.89411 1.26003 1.01179 0.93324 0.94873 1.69702 1.37843 1.39869 1.04526 0.86295 0.80403 0.79542 0.78566 1.16103 1.22053 1.20805 1.18845 0.96359 0.86301 0.94952 1.22888 1.02871 0.97683 0.99070 1.21463 0.97294 0.93612 0.99529 1.21408 1.02967 1.01457 0.91625 1.21223 0.97743 0.93659 0.99630 1.21141 1.05215 0.97712 0.97377 0.96168 0.88118 0.93259 0.86223 0.94485 0.91405 0.85180 0.88874 0.91936 0.90531 0.81365 0.83345 0.82761 0.84056 0.86252 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.84 9.25 127.69 1.18 2.02 16 2 N -0.53 -18.39 4.53 -900.47 -4.08 -22.47 16 3 C 0.02 0.46 5.66 86.31 0.49 0.95 16 4 C 0.06 1.41 7.01 72.01 0.50 1.91 16 5 O -0.39 -13.45 10.82 -148.98 -1.61 -15.06 16 6 C 0.09 3.52 6.24 72.02 0.45 3.97 16 7 C 0.05 2.22 1.70 44.18 0.08 2.29 16 8 H 0.06 2.83 7.20 -2.39 -0.02 2.81 16 9 C 0.50 23.37 5.71 87.66 0.50 23.87 16 10 O -0.55 -25.73 11.74 -3.02 -0.04 -25.76 16 11 N -0.42 -20.73 2.20 -458.91 -1.01 -21.74 16 12 C -0.36 -18.92 7.52 84.02 0.63 -18.29 16 13 H 0.09 4.88 6.94 -2.91 -0.02 4.86 16 14 C 0.05 2.82 4.59 84.91 0.39 3.21 16 15 N -0.89 -48.26 13.96 21.65 0.30 -47.96 16 16 Si 0.93 43.69 23.50 68.60 1.61 45.30 16 17 H -0.24 -10.35 5.99 99.48 0.60 -9.75 16 18 H -0.29 -13.60 7.11 99.48 0.71 -12.89 16 19 H -0.28 -14.24 6.60 99.48 0.66 -13.59 16 20 C 0.13 6.17 4.81 38.22 0.18 6.36 16 21 C -0.21 -8.80 9.05 22.41 0.20 -8.60 16 22 C -0.10 -3.44 10.04 22.25 0.22 -3.21 16 23 C -0.16 -4.89 10.04 22.30 0.22 -4.66 16 24 C -0.10 -3.75 9.85 22.25 0.22 -3.53 16 25 C -0.19 -8.64 5.52 22.41 0.12 -8.51 16 26 H 0.02 0.67 8.14 -2.39 -0.02 0.65 16 27 H 0.10 2.65 8.14 -2.39 -0.02 2.63 16 28 H 0.05 1.95 6.07 -2.39 -0.01 1.93 16 29 H 0.12 2.37 8.14 -2.39 -0.02 2.35 16 30 H 0.04 1.05 8.14 -2.39 -0.02 1.03 16 31 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 32 H 0.13 2.39 8.14 -2.39 -0.02 2.37 16 33 H 0.09 3.75 6.95 -2.39 -0.02 3.73 16 34 H 0.06 2.27 8.14 -2.39 -0.02 2.25 16 35 H 0.28 14.46 8.31 -92.71 -0.77 13.69 16 36 H 0.17 7.59 4.51 -63.93 -0.29 7.31 16 37 H 0.15 3.96 8.06 -2.91 -0.02 3.94 16 38 H 0.15 3.49 8.06 -2.91 -0.02 3.47 16 39 H 0.14 4.22 8.06 -2.91 -0.02 4.20 16 40 H 0.12 5.74 4.45 -2.91 -0.01 5.73 16 Total: -1.00 -62.81 309.06 1.19 -61.62 By element: Atomic # 1 Polarization: 27.69 SS G_CDS: 0.61 Total: 28.31 kcal Atomic # 6 Polarization: -7.63 SS G_CDS: 5.40 Total: -2.23 kcal Atomic # 7 Polarization: -87.38 SS G_CDS: -4.79 Total: -92.17 kcal Atomic # 8 Polarization: -39.18 SS G_CDS: -1.65 Total: -40.83 kcal Atomic # 14 Polarization: 43.69 SS G_CDS: 1.61 Total: 45.30 kcal Total: -62.81 1.19 -61.62 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591703128.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.034 kcal (2) G-P(sol) polarization free energy of solvation -62.812 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.778 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.188 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.624 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.590 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds