Wall clock time and date at job start Tue Mar 31 2020 02:56:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 O 1.21279 * 120.00334 * 2 1 4 4 N 1.34781 * 120.00126 * 180.02562 * 2 1 3 5 5 C 1.46500 * 120.00167 * 180.02562 * 4 2 1 6 6 C 1.52999 * 109.47221 * 180.02562 * 5 4 2 7 7 N 1.46500 * 109.47221 * 180.02562 * 6 5 4 8 8 C 1.46498 * 120.00012 * 270.00051 * 7 6 5 9 9 C 1.34778 * 119.99951 * 89.99596 * 7 6 5 10 10 O 1.21608 * 120.00079 * 5.21923 * 9 7 6 11 11 C 1.47426 * 119.99809 * 185.21557 * 9 7 6 12 12 C 1.39230 * 120.28255 * 313.18066 * 11 9 7 13 13 C 1.38227 * 120.09015 * 180.28626 * 12 11 9 14 14 C 1.38829 * 120.67549 * 359.71235 * 13 12 11 15 15 C 1.37602 * 120.56941 * 0.02562 * 14 13 12 16 16 C 1.40703 * 119.88254 * 0.02562 * 15 14 13 17 17 C 1.40892 * 120.32704 * 180.02562 * 16 15 14 18 18 H 1.07991 * 120.00216 * 149.55620 * 17 16 15 19 19 C 1.40268 * 119.99595 * 329.54851 * 17 16 15 20 20 N 1.30632 * 120.00410 * 336.33007 * 19 17 16 21 21 Si 1.86799 * 119.99916 * 156.32797 * 19 17 16 22 22 H 1.48501 * 109.47257 * 180.02562 * 21 19 17 23 23 H 1.48497 * 109.47230 * 300.00522 * 21 19 17 24 24 H 1.48503 * 109.46906 * 60.00012 * 21 19 17 25 25 H 1.08996 * 109.46827 * 179.97438 * 1 2 3 26 26 H 1.08999 * 109.47058 * 299.99769 * 1 2 3 27 27 H 1.09002 * 109.46638 * 59.99985 * 1 2 3 28 28 H 0.97002 * 119.99930 * 0.02562 * 4 2 1 29 29 H 1.09004 * 109.46989 * 59.99763 * 5 4 2 30 30 H 1.08998 * 109.46980 * 299.99905 * 5 4 2 31 31 H 1.09003 * 109.46908 * 59.99994 * 6 5 4 32 32 H 1.09003 * 109.46829 * 300.00224 * 6 5 4 33 33 H 1.09002 * 109.47107 * 265.64565 * 8 7 6 34 34 H 1.09003 * 109.46948 * 25.64164 * 8 7 6 35 35 H 1.09001 * 109.47338 * 145.64518 * 8 7 6 36 36 H 1.07994 * 119.95636 * 359.97438 * 12 11 9 37 37 H 1.07995 * 119.66147 * 179.74198 * 13 12 11 38 38 H 1.08002 * 119.71399 * 180.02562 * 14 13 12 39 39 H 1.07997 * 120.05461 * 180.02562 * 15 14 13 40 40 H 0.96999 * 119.99647 * 354.15203 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1135 1.0503 0.0000 4 7 2.1809 -1.1672 -0.0005 5 6 3.6459 -1.1672 0.0000 6 6 4.1559 -2.6097 -0.0014 7 7 5.6209 -2.6097 -0.0002 8 6 6.3545 -2.6081 -1.2683 9 6 6.2939 -2.6111 1.1676 10 8 5.6888 -2.7082 2.2180 11 6 7.7636 -2.4951 1.1715 12 6 8.5317 -3.2745 0.3107 13 6 9.9097 -3.1667 0.3219 14 6 10.5439 -2.2808 1.1822 15 6 9.8114 -1.4935 2.0407 16 6 8.4073 -1.5846 2.0499 17 6 7.6481 -0.7825 2.9246 18 1 6.6550 -0.4660 2.6421 19 6 8.1820 -0.3953 4.1625 20 7 9.1295 -1.1043 4.7158 21 14 7.5383 1.1343 5.0200 22 1 8.2621 1.3244 6.3027 23 1 7.7550 2.3179 4.1497 24 1 6.0864 0.9770 5.2890 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 1.6959 -2.0073 -0.0013 29 1 4.0089 -0.6539 0.8905 30 1 4.0096 -0.6528 -0.8894 31 1 3.7929 -3.1225 -0.8921 32 1 3.7922 -3.1245 0.8879 33 1 6.6039 -3.6325 -1.5451 34 1 5.7344 -2.1624 -2.0461 35 1 7.2708 -2.0283 -1.1573 36 1 8.0505 -3.9678 -0.3631 37 1 10.4990 -3.7777 -0.3458 38 1 11.6215 -2.2089 1.1777 39 1 10.3133 -0.8068 2.7062 40 1 9.4050 -1.9431 4.3141 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601654237.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:56:14 Heat of formation + Delta-G solvation = -58.493048 kcal Electronic energy + Delta-G solvation = -23028.402313 eV Core-core repulsion = 19614.595471 eV Total energy + Delta-G solvation = -3413.806842 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -39.74538 -39.22618 -37.21963 -35.56916 -34.42396 -33.82217 -31.12248 -30.02725 -29.48299 -28.16956 -26.21723 -25.19544 -23.39997 -21.53373 -21.04528 -20.67273 -18.89845 -17.74872 -16.88952 -16.49709 -16.36157 -15.51905 -15.41376 -14.91248 -14.71847 -14.11618 -14.08080 -13.84422 -13.45474 -13.23239 -12.79182 -12.61503 -12.49087 -12.33090 -12.21141 -12.06881 -11.88663 -11.78390 -11.27406 -11.20081 -10.92609 -10.76141 -10.37967 -10.10171 -9.98397 -9.58921 -9.10424 -9.05854 -8.81832 -8.25259 -7.77143 -7.67752 -7.24478 -4.51414 2.33504 2.60830 2.72714 2.98296 3.19233 3.28817 3.38926 3.71114 3.80845 4.01776 4.52563 4.72421 4.93521 4.97770 5.09325 5.22374 5.37055 5.40812 5.47203 5.60223 5.68501 5.71848 5.97063 6.03949 6.04375 6.13944 6.17623 6.33895 6.42734 6.75212 6.95611 6.99240 7.24990 7.43042 7.49043 7.57457 7.69309 7.80724 7.93238 8.13189 8.16058 8.18318 8.64023 8.76442 9.08746 9.98989 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.012979 B = 0.005478 C = 0.004119 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2156.788801 B = 5110.392134 C = 6796.392735 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.506 3.494 3 O -0.546 6.546 4 N -0.727 5.727 5 C 0.100 3.900 6 C 0.111 3.889 7 N -0.626 5.626 8 C 0.085 3.915 9 C 0.582 3.418 10 O -0.533 6.533 11 C -0.262 4.262 12 C -0.047 4.047 13 C -0.263 4.263 14 C -0.072 4.072 15 C -0.209 4.209 16 C 0.128 3.872 17 C -0.481 4.481 18 H 0.079 0.921 19 C 0.040 3.960 20 N -0.784 5.784 21 Si 1.063 2.937 22 H -0.272 1.272 23 H -0.273 1.273 24 H -0.273 1.273 25 H 0.074 0.926 26 H 0.094 0.906 27 H 0.092 0.908 28 H 0.399 0.601 29 H 0.075 0.925 30 H 0.067 0.933 31 H 0.073 0.927 32 H 0.087 0.913 33 H 0.049 0.951 34 H 0.059 0.941 35 H 0.082 0.918 36 H 0.096 0.904 37 H 0.093 0.907 38 H 0.093 0.907 39 H 0.107 0.893 40 H 0.300 0.700 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.965 -2.493 -10.102 15.116 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.293 3.707 3 O -0.423 6.423 4 N -0.380 5.380 5 C -0.025 4.025 6 C -0.014 4.014 7 N -0.362 5.362 8 C -0.059 4.059 9 C 0.375 3.625 10 O -0.409 6.409 11 C -0.266 4.266 12 C -0.065 4.065 13 C -0.282 4.282 14 C -0.091 4.091 15 C -0.228 4.228 16 C 0.124 3.876 17 C -0.508 4.508 18 H 0.097 0.903 19 C -0.183 4.183 20 N -0.406 5.406 21 Si 0.886 3.114 22 H -0.197 1.197 23 H -0.198 1.198 24 H -0.198 1.198 25 H 0.093 0.907 26 H 0.112 0.888 27 H 0.111 0.889 28 H 0.233 0.767 29 H 0.094 0.906 30 H 0.085 0.915 31 H 0.092 0.908 32 H 0.105 0.895 33 H 0.068 0.932 34 H 0.078 0.922 35 H 0.101 0.899 36 H 0.114 0.886 37 H 0.111 0.889 38 H 0.111 0.889 39 H 0.125 0.875 40 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -10.568 -0.861 -8.151 13.374 hybrid contribution -0.353 -1.553 -1.558 2.228 sum -10.921 -2.414 -9.709 14.811 Atomic orbital electron populations 1.21835 0.91749 1.04064 1.05215 1.20809 0.90549 0.83528 0.75803 1.90754 1.70744 1.31402 1.49377 1.46010 1.07572 1.08712 1.75670 1.21817 0.78996 0.98444 1.03199 1.21335 0.81935 0.95055 1.03037 1.47795 1.04657 1.76678 1.07082 1.21867 0.97970 1.01226 0.84796 1.18569 0.88099 0.73880 0.81962 1.90694 1.70246 1.48835 1.31127 1.19296 0.90303 1.07414 1.09610 1.20795 0.93848 0.96485 0.95395 1.20222 0.93804 1.07348 1.06824 1.20732 0.97597 0.95503 0.95290 1.21166 0.93994 1.03930 1.03680 1.17376 0.91478 0.88482 0.90303 1.20623 1.02922 1.25530 1.01757 0.90278 1.27110 0.93119 1.02553 0.95511 1.70378 1.20568 1.11730 1.37949 0.83664 0.77057 0.74075 0.76587 1.19654 1.19795 1.19844 0.90651 0.88754 0.88893 0.76667 0.90642 0.91482 0.90827 0.89500 0.93215 0.92236 0.89929 0.88578 0.88910 0.88924 0.87487 0.88635 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.30 10.39 36.01 0.37 -0.92 16 2 C 0.51 6.58 7.94 -10.98 -0.09 6.50 16 3 O -0.55 -10.04 17.10 5.56 0.10 -9.94 16 4 N -0.73 -8.43 5.56 -60.29 -0.33 -8.77 16 5 C 0.10 1.50 6.00 -4.04 -0.02 1.47 16 6 C 0.11 1.55 5.54 -4.04 -0.02 1.53 16 7 N -0.63 -10.92 2.87 -182.84 -0.53 -11.44 16 8 C 0.08 1.20 9.02 59.85 0.54 1.74 16 9 C 0.58 13.31 6.60 -12.52 -0.08 13.23 16 10 O -0.53 -13.99 15.27 5.27 0.08 -13.91 16 11 C -0.26 -6.28 5.03 -104.37 -0.53 -6.81 16 12 C -0.05 -0.97 7.68 -39.22 -0.30 -1.27 16 13 C -0.26 -5.44 10.03 -39.37 -0.39 -5.83 16 14 C -0.07 -1.59 10.01 -39.60 -0.40 -1.99 16 15 C -0.21 -5.18 7.96 -38.88 -0.31 -5.49 16 16 C 0.13 3.37 5.21 -106.54 -0.56 2.82 16 17 C -0.48 -13.22 7.73 -37.82 -0.29 -13.52 16 18 H 0.08 2.25 7.14 -52.49 -0.37 1.88 16 19 C 0.04 1.06 4.95 -17.30 -0.09 0.97 16 20 N -0.78 -21.13 12.46 55.56 0.69 -20.43 16 21 Si 1.06 22.80 30.00 -169.99 -5.10 17.70 16 22 H -0.27 -5.66 7.11 56.52 0.40 -5.25 16 23 H -0.27 -5.60 7.11 56.52 0.40 -5.20 16 24 H -0.27 -5.79 7.11 56.52 0.40 -5.39 16 25 H 0.07 0.36 7.91 -51.93 -0.41 -0.05 16 26 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 27 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 28 H 0.40 3.13 8.31 -40.82 -0.34 2.79 16 29 H 0.08 1.45 8.14 -51.93 -0.42 1.03 16 30 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 31 H 0.07 0.76 8.07 -51.93 -0.42 0.34 16 32 H 0.09 1.32 7.35 -51.93 -0.38 0.94 16 33 H 0.05 0.62 7.06 -51.93 -0.37 0.25 16 34 H 0.06 0.67 8.04 -51.93 -0.42 0.25 16 35 H 0.08 1.33 6.09 -51.93 -0.32 1.01 16 36 H 0.10 1.72 6.08 -52.49 -0.32 1.40 16 37 H 0.09 1.67 8.06 -52.49 -0.42 1.24 16 38 H 0.09 1.78 8.06 -52.49 -0.42 1.36 16 39 H 0.11 2.72 6.82 -52.49 -0.36 2.37 16 40 H 0.30 8.30 6.78 -40.82 -0.28 8.02 16 LS Contribution 337.02 15.07 5.08 5.08 Total: -1.00 -33.75 337.02 -7.49 -41.24 By element: Atomic # 1 Polarization: 13.38 SS G_CDS: -5.31 Total: 8.07 kcal Atomic # 6 Polarization: -5.42 SS G_CDS: -2.16 Total: -7.59 kcal Atomic # 7 Polarization: -40.47 SS G_CDS: -0.17 Total: -40.64 kcal Atomic # 8 Polarization: -24.03 SS G_CDS: 0.18 Total: -23.85 kcal Atomic # 14 Polarization: 22.80 SS G_CDS: -5.10 Total: 17.70 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -33.75 -7.49 -41.24 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601654237.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.256 kcal (2) G-P(sol) polarization free energy of solvation -33.749 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.005 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.488 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.237 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.493 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds