Wall clock time and date at job start Tue Mar 31 2020 02:56:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 O 1.21279 * 120.00334 * 2 1 4 4 N 1.34781 * 120.00126 * 180.02562 * 2 1 3 5 5 C 1.46500 * 120.00167 * 180.02562 * 4 2 1 6 6 C 1.52999 * 109.47221 * 180.02562 * 5 4 2 7 7 N 1.46500 * 109.47221 * 180.02562 * 6 5 4 8 8 C 1.46498 * 120.00012 * 270.00051 * 7 6 5 9 9 C 1.34778 * 119.99951 * 89.99596 * 7 6 5 10 10 O 1.21608 * 120.00079 * 5.21923 * 9 7 6 11 11 C 1.47426 * 119.99809 * 185.21557 * 9 7 6 12 12 C 1.39230 * 120.28255 * 313.18066 * 11 9 7 13 13 C 1.38227 * 120.09015 * 180.28626 * 12 11 9 14 14 C 1.38829 * 120.67549 * 359.71235 * 13 12 11 15 15 C 1.37602 * 120.56941 * 0.02562 * 14 13 12 16 16 C 1.40703 * 119.88254 * 0.02562 * 15 14 13 17 17 C 1.40892 * 120.32704 * 180.02562 * 16 15 14 18 18 H 1.07991 * 120.00216 * 149.55620 * 17 16 15 19 19 C 1.40268 * 119.99595 * 329.54851 * 17 16 15 20 20 N 1.30632 * 120.00410 * 336.33007 * 19 17 16 21 21 Si 1.86799 * 119.99916 * 156.32797 * 19 17 16 22 22 H 1.48501 * 109.47257 * 180.02562 * 21 19 17 23 23 H 1.48497 * 109.47230 * 300.00522 * 21 19 17 24 24 H 1.48503 * 109.46906 * 60.00012 * 21 19 17 25 25 H 1.08996 * 109.46827 * 179.97438 * 1 2 3 26 26 H 1.08999 * 109.47058 * 299.99769 * 1 2 3 27 27 H 1.09002 * 109.46638 * 59.99985 * 1 2 3 28 28 H 0.97002 * 119.99930 * 0.02562 * 4 2 1 29 29 H 1.09004 * 109.46989 * 59.99763 * 5 4 2 30 30 H 1.08998 * 109.46980 * 299.99905 * 5 4 2 31 31 H 1.09003 * 109.46908 * 59.99994 * 6 5 4 32 32 H 1.09003 * 109.46829 * 300.00224 * 6 5 4 33 33 H 1.09002 * 109.47107 * 265.64565 * 8 7 6 34 34 H 1.09003 * 109.46948 * 25.64164 * 8 7 6 35 35 H 1.09001 * 109.47338 * 145.64518 * 8 7 6 36 36 H 1.07994 * 119.95636 * 359.97438 * 12 11 9 37 37 H 1.07995 * 119.66147 * 179.74198 * 13 12 11 38 38 H 1.08002 * 119.71399 * 180.02562 * 14 13 12 39 39 H 1.07997 * 120.05461 * 180.02562 * 15 14 13 40 40 H 0.96999 * 119.99647 * 354.15203 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1135 1.0503 0.0000 4 7 2.1809 -1.1672 -0.0005 5 6 3.6459 -1.1672 0.0000 6 6 4.1559 -2.6097 -0.0014 7 7 5.6209 -2.6097 -0.0002 8 6 6.3545 -2.6081 -1.2683 9 6 6.2939 -2.6111 1.1676 10 8 5.6888 -2.7082 2.2180 11 6 7.7636 -2.4951 1.1715 12 6 8.5317 -3.2745 0.3107 13 6 9.9097 -3.1667 0.3219 14 6 10.5439 -2.2808 1.1822 15 6 9.8114 -1.4935 2.0407 16 6 8.4073 -1.5846 2.0499 17 6 7.6481 -0.7825 2.9246 18 1 6.6550 -0.4660 2.6421 19 6 8.1820 -0.3953 4.1625 20 7 9.1295 -1.1043 4.7158 21 14 7.5383 1.1343 5.0200 22 1 8.2621 1.3244 6.3027 23 1 7.7550 2.3179 4.1497 24 1 6.0864 0.9770 5.2890 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 1.6959 -2.0073 -0.0013 29 1 4.0089 -0.6539 0.8905 30 1 4.0096 -0.6528 -0.8894 31 1 3.7929 -3.1225 -0.8921 32 1 3.7922 -3.1245 0.8879 33 1 6.6039 -3.6325 -1.5451 34 1 5.7344 -2.1624 -2.0461 35 1 7.2708 -2.0283 -1.1573 36 1 8.0505 -3.9678 -0.3631 37 1 10.4990 -3.7777 -0.3458 38 1 11.6215 -2.2089 1.1777 39 1 10.3133 -0.8068 2.7062 40 1 9.4050 -1.9431 4.3141 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601654237.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:56:14 Heat of formation + Delta-G solvation = -82.767521 kcal Electronic energy + Delta-G solvation = -23029.454933 eV Core-core repulsion = 19614.595471 eV Total energy + Delta-G solvation = -3414.859462 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.20415 -40.56228 -38.97244 -37.06718 -35.99228 -35.45692 -32.46084 -31.54550 -31.12527 -29.29744 -27.65702 -26.98527 -24.85164 -23.13068 -22.81034 -21.80584 -20.54977 -19.56697 -18.10317 -17.93534 -17.57239 -16.96681 -16.67202 -16.59181 -16.37584 -15.77743 -15.57212 -15.21291 -14.80718 -14.55202 -14.38639 -14.19022 -14.01197 -13.67596 -13.35606 -13.22927 -13.15301 -13.08205 -13.00775 -12.70614 -12.52946 -12.37181 -12.05490 -11.90660 -11.44520 -11.12870 -10.98052 -10.60376 -10.25770 -9.72940 -9.60712 -9.53157 -9.21406 -6.52528 0.51200 0.89054 1.39820 1.54504 1.57540 1.69276 1.74650 2.09735 2.23465 2.51954 2.63102 3.47168 3.77051 3.79454 3.95675 4.12416 4.20977 4.30264 4.36244 4.42255 4.49524 4.63523 4.67586 4.68916 4.81019 4.84222 4.91221 4.95357 5.05566 5.11864 5.29021 5.35745 5.56985 5.67290 5.72790 5.77686 5.91774 6.11186 6.31037 6.43208 6.51170 6.72652 6.81478 7.21449 7.38291 7.96260 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.012979 B = 0.005478 C = 0.004119 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2156.788801 B = 5110.392134 C = 6796.392735 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.497 3.503 3 O -0.609 6.609 4 N -0.711 5.711 5 C 0.111 3.889 6 C 0.115 3.885 7 N -0.618 5.618 8 C 0.077 3.923 9 C 0.573 3.427 10 O -0.582 6.582 11 C -0.275 4.275 12 C -0.042 4.042 13 C -0.243 4.243 14 C -0.072 4.072 15 C -0.232 4.232 16 C 0.102 3.898 17 C -0.526 4.526 18 H 0.049 0.951 19 C 0.007 3.993 20 N -0.807 5.807 21 Si 1.106 2.894 22 H -0.257 1.257 23 H -0.260 1.260 24 H -0.275 1.275 25 H 0.112 0.888 26 H 0.098 0.902 27 H 0.107 0.893 28 H 0.421 0.579 29 H 0.018 0.982 30 H 0.065 0.935 31 H 0.130 0.870 32 H 0.074 0.926 33 H 0.079 0.921 34 H 0.095 0.905 35 H 0.060 0.940 36 H 0.137 0.863 37 H 0.137 0.863 38 H 0.124 0.876 39 H 0.088 0.912 40 H 0.284 0.716 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.884 -4.439 -13.239 18.336 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.287 3.713 3 O -0.491 6.491 4 N -0.365 5.365 5 C -0.015 4.015 6 C -0.009 4.009 7 N -0.352 5.352 8 C -0.065 4.065 9 C 0.366 3.634 10 O -0.462 6.462 11 C -0.279 4.279 12 C -0.060 4.060 13 C -0.262 4.262 14 C -0.090 4.090 15 C -0.251 4.251 16 C 0.098 3.902 17 C -0.554 4.554 18 H 0.068 0.932 19 C -0.210 4.210 20 N -0.430 5.430 21 Si 0.923 3.077 22 H -0.181 1.181 23 H -0.185 1.185 24 H -0.200 1.200 25 H 0.130 0.870 26 H 0.116 0.884 27 H 0.126 0.874 28 H 0.260 0.740 29 H 0.036 0.964 30 H 0.083 0.917 31 H 0.148 0.852 32 H 0.092 0.908 33 H 0.098 0.902 34 H 0.113 0.887 35 H 0.079 0.921 36 H 0.154 0.846 37 H 0.155 0.845 38 H 0.142 0.858 39 H 0.107 0.893 40 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -11.511 -2.861 -11.357 16.421 hybrid contribution -0.055 -1.133 -0.873 1.431 sum -11.566 -3.994 -12.230 17.300 Atomic orbital electron populations 1.21862 0.86934 1.06812 1.06031 1.21905 0.92800 0.82595 0.74032 1.90728 1.72441 1.33665 1.52260 1.45879 1.06136 1.09809 1.74701 1.21483 0.81180 0.98536 1.00348 1.21546 0.79762 0.94486 1.05073 1.47752 1.06269 1.74482 1.06662 1.22133 0.97579 1.03038 0.83704 1.18592 0.88051 0.73838 0.82935 1.90657 1.70964 1.51277 1.33345 1.19706 0.91759 1.07047 1.09433 1.21198 0.94084 0.95892 0.94869 1.20801 0.94074 1.05763 1.05544 1.21134 0.99227 0.94517 0.94117 1.21131 0.93705 1.05290 1.05004 1.17738 0.92480 0.89107 0.90867 1.20521 1.02304 1.29043 1.03496 0.93228 1.28255 0.92798 1.04285 0.95668 1.70488 1.22680 1.11700 1.38124 0.83158 0.76441 0.71604 0.76460 1.18113 1.18458 1.20000 0.86963 0.88374 0.87431 0.74032 0.96352 0.91656 0.85207 0.90763 0.90230 0.88661 0.92078 0.84578 0.84484 0.85839 0.89331 0.90429 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.00 10.39 71.24 0.74 -1.26 16 2 C 0.50 12.62 7.94 87.66 0.70 13.32 16 3 O -0.61 -23.21 17.10 -3.03 -0.05 -23.26 16 4 N -0.71 -15.64 5.56 -463.06 -2.57 -18.21 16 5 C 0.11 3.33 6.00 86.38 0.52 3.84 16 6 C 0.11 3.01 5.54 86.38 0.48 3.49 16 7 N -0.62 -20.75 2.87 -850.65 -2.44 -23.19 16 8 C 0.08 1.90 9.02 127.77 1.15 3.06 16 9 C 0.57 26.80 6.60 86.66 0.57 27.37 16 10 O -0.58 -32.26 15.27 -4.06 -0.06 -32.32 16 11 C -0.27 -13.34 5.03 -19.70 -0.10 -13.44 16 12 C -0.04 -1.64 7.68 22.51 0.17 -1.47 16 13 C -0.24 -9.12 10.03 22.41 0.22 -8.90 16 14 C -0.07 -3.02 10.01 22.26 0.22 -2.80 16 15 C -0.23 -11.88 7.96 22.72 0.18 -11.70 16 16 C 0.10 5.62 5.21 -21.11 -0.11 5.51 16 17 C -0.53 -31.12 7.73 23.41 0.18 -30.94 16 18 H 0.05 3.11 7.14 -2.92 -0.02 3.09 16 19 C 0.01 0.39 4.95 85.36 0.42 0.81 16 20 N -0.81 -46.17 12.46 21.88 0.27 -45.90 16 21 Si 1.11 48.83 30.00 68.60 2.06 50.88 16 22 H -0.26 -10.62 7.11 99.48 0.71 -9.92 16 23 H -0.26 -10.79 7.11 99.48 0.71 -10.08 16 24 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 25 H 0.11 0.60 7.91 -2.39 -0.02 0.58 16 26 H 0.10 1.25 8.14 -2.39 -0.02 1.23 16 27 H 0.11 1.12 8.14 -2.39 -0.02 1.10 16 28 H 0.42 5.40 8.31 -92.71 -0.77 4.63 16 29 H 0.02 0.75 8.14 -2.38 -0.02 0.73 16 30 H 0.07 1.97 8.14 -2.39 -0.02 1.95 16 31 H 0.13 2.03 8.07 -2.39 -0.02 2.01 16 32 H 0.07 2.20 7.35 -2.39 -0.02 2.18 16 33 H 0.08 1.54 7.06 -2.39 -0.02 1.53 16 34 H 0.09 1.71 8.04 -2.39 -0.02 1.69 16 35 H 0.06 1.81 6.09 -2.39 -0.01 1.79 16 36 H 0.14 4.19 6.08 -2.91 -0.02 4.17 16 37 H 0.14 4.04 8.06 -2.91 -0.02 4.01 16 38 H 0.12 4.41 8.06 -2.91 -0.02 4.38 16 39 H 0.09 4.77 6.82 -2.91 -0.02 4.75 16 40 H 0.28 16.77 6.78 -92.71 -0.63 16.14 16 Total: -1.00 -83.40 337.02 2.99 -80.42 By element: Atomic # 1 Polarization: 24.25 SS G_CDS: 0.43 Total: 24.68 kcal Atomic # 6 Polarization: -18.45 SS G_CDS: 5.35 Total: -13.10 kcal Atomic # 7 Polarization: -82.56 SS G_CDS: -4.74 Total: -87.30 kcal Atomic # 8 Polarization: -55.47 SS G_CDS: -0.11 Total: -55.58 kcal Atomic # 14 Polarization: 48.83 SS G_CDS: 2.06 Total: 50.88 kcal Total: -83.40 2.99 -80.42 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601654237.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.351 kcal (2) G-P(sol) polarization free energy of solvation -83.401 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.753 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.985 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.416 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.768 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds