Wall clock time and date at job start Tue Mar 31 2020 02:54:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46495 * 109.47143 * 2 1 4 4 C 1.34782 * 120.00196 * 180.02562 * 3 2 1 5 5 O 1.21280 * 119.99624 * 0.02562 * 4 3 2 6 6 C 1.50693 * 120.00182 * 180.02562 * 4 3 2 7 7 N 1.46506 * 109.47081 * 180.02562 * 6 4 3 8 8 C 1.46499 * 119.99787 * 269.99591 * 7 6 4 9 9 C 1.34772 * 119.99999 * 89.99823 * 7 6 4 10 10 O 1.21592 * 120.00140 * 3.38283 * 9 7 6 11 11 C 1.47642 * 120.00306 * 183.38148 * 9 7 6 12 12 C 1.40020 * 119.89190 * 328.48330 * 11 9 7 13 13 C 1.36316 * 120.10468 * 180.25989 * 12 11 9 14 14 C 1.40886 * 119.89261 * 359.46691 * 13 12 11 15 15 C 1.41105 * 120.10284 * 180.30503 * 14 13 12 16 16 H 1.08004 * 119.99858 * 334.43115 * 15 14 13 17 17 C 1.40227 * 120.00254 * 154.43224 * 15 14 13 18 18 N 1.30651 * 119.99612 * 342.06778 * 17 15 14 19 19 Si 1.86799 * 120.00388 * 162.06687 * 17 15 14 20 20 H 1.48503 * 109.46785 * 94.98196 * 19 17 15 21 21 H 1.48496 * 109.47093 * 214.98693 * 19 17 15 22 22 H 1.48497 * 109.46850 * 334.98763 * 19 17 15 23 23 C 1.40891 * 119.79178 * 0.27913 * 14 13 12 24 24 C 1.36309 * 119.89329 * 0.02562 * 23 14 13 25 25 H 1.09001 * 109.47361 * 180.02562 * 1 2 3 26 26 H 1.09002 * 109.46879 * 299.99393 * 1 2 3 27 27 H 1.08994 * 109.47298 * 59.99583 * 1 2 3 28 28 H 1.09003 * 109.46775 * 240.00063 * 2 1 3 29 29 H 1.08994 * 109.47298 * 120.00417 * 2 1 3 30 30 H 0.96999 * 120.00223 * 0.02562 * 3 2 1 31 31 H 1.08995 * 109.47450 * 59.99620 * 6 4 3 32 32 H 1.09008 * 109.47125 * 299.99812 * 6 4 3 33 33 H 1.08992 * 109.47296 * 275.18237 * 8 7 6 34 34 H 1.09003 * 109.47064 * 35.18963 * 8 7 6 35 35 H 1.08998 * 109.46960 * 155.18267 * 8 7 6 36 36 H 1.07998 * 119.94461 * 0.02562 * 12 11 9 37 37 H 1.07997 * 120.05284 * 179.75187 * 13 12 11 38 38 H 0.96998 * 119.99942 * 180.02562 * 18 17 15 39 39 H 1.08001 * 120.05248 * 180.02562 * 23 14 13 40 40 H 1.08002 * 119.95071 * 179.97438 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 3.3434 1.6275 -0.0005 5 8 4.1315 0.7056 -0.0015 6 6 3.8457 3.0482 0.0001 7 7 5.3108 3.0482 -0.0013 8 6 6.0444 3.0474 1.2668 9 6 5.9836 3.0490 -1.1691 10 8 5.3763 3.1119 -2.2206 11 6 7.4581 2.9736 -1.1717 12 6 8.1877 3.5402 -0.1194 13 6 9.5494 3.4777 -0.1201 14 6 10.2221 2.8319 -1.1761 15 6 11.6313 2.7590 -1.1780 16 1 12.2111 3.5019 -0.6504 17 6 12.2788 1.7221 -1.8649 18 7 11.6163 0.6471 -2.2002 19 14 14.0886 1.8777 -2.3006 20 1 14.9085 1.2183 -1.2526 21 1 14.3404 1.2244 -3.6102 22 1 14.4556 3.3141 -2.3853 23 6 9.4834 2.2587 -2.2300 24 6 8.1223 2.3316 -2.2238 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8901 27 1 -0.3633 0.5139 -0.8899 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5139 0.8899 30 1 1.3880 2.1185 0.0004 31 1 3.4829 3.5616 0.8904 32 1 3.4820 3.5626 -0.8895 33 1 6.1460 4.0705 1.6284 34 1 5.4994 2.4546 2.0015 35 1 7.0337 2.6161 1.1139 36 1 7.6708 4.0307 0.6921 37 1 10.1114 3.9185 0.6900 38 1 12.0643 -0.0703 -2.6751 39 1 9.9948 1.7623 -3.0415 40 1 7.5551 1.8929 -3.0315 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000611146073.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:54:37 Heat of formation + Delta-G solvation = -38.904808 kcal Electronic energy + Delta-G solvation = -22536.178036 eV Core-core repulsion = 19123.220604 eV Total energy + Delta-G solvation = -3412.957432 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.03824 -38.84412 -37.04831 -35.41566 -34.81945 -33.81704 -31.22501 -30.19488 -29.73169 -27.99962 -26.39970 -25.28604 -23.08523 -21.57103 -21.08842 -20.50345 -18.89839 -17.54091 -17.18675 -16.50298 -16.33293 -15.56569 -15.34235 -15.30944 -14.55584 -14.27827 -14.06510 -13.55675 -13.36240 -13.07281 -12.91244 -12.68059 -12.43676 -12.25061 -12.05823 -12.00007 -11.90335 -11.57547 -11.52198 -11.25889 -11.01706 -10.93691 -10.50005 -9.96981 -9.93176 -9.43457 -9.27143 -9.12614 -8.96887 -8.28243 -7.60363 -7.45640 -6.94623 -4.52685 2.34054 2.74344 2.93132 2.99139 2.99993 3.05474 3.07712 3.61898 3.79721 3.85935 4.56259 4.70784 4.85101 4.94131 5.06266 5.09877 5.37414 5.46024 5.57678 5.59129 5.69353 5.77455 5.81357 5.90257 6.13260 6.22156 6.33041 6.37516 6.79213 6.88108 6.91360 7.10331 7.16727 7.46083 7.50826 7.65548 7.78517 7.92137 8.07277 8.15875 8.30104 8.49318 8.70543 8.82392 8.98721 9.98032 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.031435 B = 0.003195 C = 0.003077 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 890.506253 B = 8761.386491 C = 9098.829623 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.114 3.886 3 N -0.738 5.738 4 C 0.492 3.508 5 O -0.520 6.520 6 C 0.101 3.899 7 N -0.607 5.607 8 C 0.072 3.928 9 C 0.582 3.418 10 O -0.568 6.568 11 C -0.275 4.275 12 C -0.065 4.065 13 C -0.236 4.236 14 C 0.128 3.872 15 C -0.447 4.447 16 H 0.084 0.916 17 C 0.075 3.925 18 N -0.772 5.772 19 Si 0.911 3.089 20 H -0.268 1.268 21 H -0.273 1.273 22 H -0.258 1.258 23 C -0.179 4.179 24 C -0.037 4.037 25 H 0.072 0.928 26 H 0.060 0.940 27 H 0.061 0.939 28 H 0.065 0.935 29 H 0.065 0.935 30 H 0.398 0.602 31 H 0.100 0.900 32 H 0.111 0.889 33 H 0.053 0.947 34 H 0.054 0.946 35 H 0.105 0.895 36 H 0.108 0.892 37 H 0.097 0.903 38 H 0.286 0.714 39 H 0.119 0.881 40 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.756 2.051 6.548 16.273 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.010 4.010 3 N -0.393 5.393 4 C 0.277 3.723 5 O -0.394 6.394 6 C -0.027 4.027 7 N -0.339 5.339 8 C -0.071 4.071 9 C 0.378 3.622 10 O -0.448 6.448 11 C -0.279 4.279 12 C -0.084 4.084 13 C -0.256 4.256 14 C 0.125 3.875 15 C -0.475 4.475 16 H 0.102 0.898 17 C -0.147 4.147 18 N -0.395 5.395 19 Si 0.735 3.265 20 H -0.193 1.193 21 H -0.198 1.198 22 H -0.182 1.182 23 C -0.199 4.199 24 C -0.056 4.056 25 H 0.091 0.909 26 H 0.079 0.921 27 H 0.080 0.920 28 H 0.084 0.916 29 H 0.083 0.917 30 H 0.232 0.768 31 H 0.118 0.882 32 H 0.129 0.871 33 H 0.071 0.929 34 H 0.073 0.927 35 H 0.123 0.877 36 H 0.126 0.874 37 H 0.115 0.885 38 H 0.097 0.903 39 H 0.137 0.863 40 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -14.433 1.150 5.890 15.631 hybrid contribution 0.348 0.115 -0.064 0.372 sum -14.085 1.265 5.825 15.295 Atomic orbital electron populations 1.21994 0.94582 1.03101 1.02396 1.21251 0.93974 0.83387 1.02375 1.46063 1.07220 1.08651 1.77354 1.21554 0.82047 0.92906 0.75842 1.90747 1.55139 1.46169 1.47340 1.21122 0.83457 0.93244 1.04873 1.47318 1.03712 1.75511 1.07399 1.22399 0.99622 1.00463 0.84572 1.18747 0.88387 0.73297 0.81804 1.90627 1.70748 1.52103 1.31359 1.18788 0.89514 1.17430 1.02189 1.20907 0.94493 0.97401 0.95591 1.20689 0.93259 1.11288 1.00357 1.17768 0.93292 0.87388 0.89040 1.19784 0.91871 1.08927 1.26940 0.89833 1.26086 1.01329 0.94072 0.93183 1.69758 1.38932 1.03957 1.26872 0.86242 0.81400 0.80072 0.78801 1.19331 1.19787 1.18152 1.20961 0.92189 1.06463 1.00245 1.20390 0.94473 0.95611 0.95172 0.90929 0.92074 0.91968 0.91636 0.91707 0.76807 0.88175 0.87142 0.92893 0.92735 0.87693 0.87396 0.88459 0.90282 0.86322 0.88702 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.02 10.03 37.16 0.37 -0.65 16 2 C 0.11 1.14 6.39 -4.04 -0.03 1.12 16 3 N -0.74 -7.89 5.56 -60.30 -0.33 -8.22 16 4 C 0.49 7.50 7.90 -10.99 -0.09 7.41 16 5 O -0.52 -10.68 16.43 5.56 0.09 -10.59 16 6 C 0.10 1.39 5.94 -5.19 -0.03 1.36 16 7 N -0.61 -10.84 2.36 -184.15 -0.43 -11.28 16 8 C 0.07 1.09 8.79 59.85 0.53 1.62 16 9 C 0.58 13.13 7.43 -12.42 -0.09 13.03 16 10 O -0.57 -14.13 16.29 5.29 0.09 -14.05 16 11 C -0.27 -6.58 5.49 -104.73 -0.57 -7.16 16 12 C -0.07 -1.43 7.35 -39.61 -0.29 -1.72 16 13 C -0.24 -5.56 9.73 -39.27 -0.38 -5.94 16 14 C 0.13 3.35 5.56 -106.80 -0.59 2.75 16 15 C -0.45 -11.38 9.04 -37.75 -0.34 -11.72 16 16 H 0.08 2.01 7.91 -52.48 -0.42 1.59 16 17 C 0.07 1.80 5.13 -17.31 -0.09 1.71 16 18 N -0.77 -19.46 11.02 55.56 0.61 -18.85 16 19 Si 0.91 17.85 29.60 -169.99 -5.03 12.82 16 20 H -0.27 -5.16 7.11 56.52 0.40 -4.76 16 21 H -0.27 -5.26 7.11 56.52 0.40 -4.86 16 22 H -0.26 -5.01 7.11 56.52 0.40 -4.61 16 23 C -0.18 -4.75 8.63 -39.27 -0.34 -5.09 16 24 C -0.04 -0.95 9.53 -39.61 -0.38 -1.33 16 25 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 26 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 27 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 28 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 29 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 30 H 0.40 2.81 8.47 -40.82 -0.35 2.47 16 31 H 0.10 0.93 8.07 -51.93 -0.42 0.51 16 32 H 0.11 1.51 7.38 -51.92 -0.38 1.13 16 33 H 0.05 0.66 7.42 -51.93 -0.39 0.27 16 34 H 0.05 0.73 8.11 -51.93 -0.42 0.31 16 35 H 0.10 1.86 4.72 -51.93 -0.25 1.61 16 36 H 0.11 1.95 4.77 -52.49 -0.25 1.70 16 37 H 0.10 2.09 8.06 -52.49 -0.42 1.66 16 38 H 0.29 6.51 8.29 -40.82 -0.34 6.17 16 39 H 0.12 3.21 6.23 -52.49 -0.33 2.88 16 40 H 0.09 2.41 7.94 -52.49 -0.42 2.00 16 LS Contribution 337.58 15.07 5.09 5.09 Total: -1.00 -33.63 337.58 -7.53 -41.16 By element: Atomic # 1 Polarization: 13.80 SS G_CDS: -5.28 Total: 8.52 kcal Atomic # 6 Polarization: -2.28 SS G_CDS: -2.33 Total: -4.61 kcal Atomic # 7 Polarization: -38.19 SS G_CDS: -0.16 Total: -38.35 kcal Atomic # 8 Polarization: -24.81 SS G_CDS: 0.18 Total: -24.63 kcal Atomic # 14 Polarization: 17.85 SS G_CDS: -5.03 Total: 12.82 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -33.63 -7.53 -41.16 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000611146073.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.257 kcal (2) G-P(sol) polarization free energy of solvation -33.633 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.376 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.529 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.162 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.905 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds