Wall clock time and date at job start Tue Mar 31 2020 02:54:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46495 * 109.47143 * 2 1 4 4 C 1.34782 * 120.00196 * 180.02562 * 3 2 1 5 5 O 1.21280 * 119.99624 * 0.02562 * 4 3 2 6 6 C 1.50693 * 120.00182 * 180.02562 * 4 3 2 7 7 N 1.46506 * 109.47081 * 180.02562 * 6 4 3 8 8 C 1.46499 * 119.99787 * 269.99591 * 7 6 4 9 9 C 1.34772 * 119.99999 * 89.99823 * 7 6 4 10 10 O 1.21592 * 120.00140 * 3.38283 * 9 7 6 11 11 C 1.47642 * 120.00306 * 183.38148 * 9 7 6 12 12 C 1.40020 * 119.89190 * 328.48330 * 11 9 7 13 13 C 1.36316 * 120.10468 * 180.25989 * 12 11 9 14 14 C 1.40886 * 119.89261 * 359.46691 * 13 12 11 15 15 C 1.41105 * 120.10284 * 180.30503 * 14 13 12 16 16 H 1.08004 * 119.99858 * 334.43115 * 15 14 13 17 17 C 1.40227 * 120.00254 * 154.43224 * 15 14 13 18 18 N 1.30651 * 119.99612 * 342.06778 * 17 15 14 19 19 Si 1.86799 * 120.00388 * 162.06687 * 17 15 14 20 20 H 1.48503 * 109.46785 * 94.98196 * 19 17 15 21 21 H 1.48496 * 109.47093 * 214.98693 * 19 17 15 22 22 H 1.48497 * 109.46850 * 334.98763 * 19 17 15 23 23 C 1.40891 * 119.79178 * 0.27913 * 14 13 12 24 24 C 1.36309 * 119.89329 * 0.02562 * 23 14 13 25 25 H 1.09001 * 109.47361 * 180.02562 * 1 2 3 26 26 H 1.09002 * 109.46879 * 299.99393 * 1 2 3 27 27 H 1.08994 * 109.47298 * 59.99583 * 1 2 3 28 28 H 1.09003 * 109.46775 * 240.00063 * 2 1 3 29 29 H 1.08994 * 109.47298 * 120.00417 * 2 1 3 30 30 H 0.96999 * 120.00223 * 0.02562 * 3 2 1 31 31 H 1.08995 * 109.47450 * 59.99620 * 6 4 3 32 32 H 1.09008 * 109.47125 * 299.99812 * 6 4 3 33 33 H 1.08992 * 109.47296 * 275.18237 * 8 7 6 34 34 H 1.09003 * 109.47064 * 35.18963 * 8 7 6 35 35 H 1.08998 * 109.46960 * 155.18267 * 8 7 6 36 36 H 1.07998 * 119.94461 * 0.02562 * 12 11 9 37 37 H 1.07997 * 120.05284 * 179.75187 * 13 12 11 38 38 H 0.96998 * 119.99942 * 180.02562 * 18 17 15 39 39 H 1.08001 * 120.05248 * 180.02562 * 23 14 13 40 40 H 1.08002 * 119.95071 * 179.97438 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 3.3434 1.6275 -0.0005 5 8 4.1315 0.7056 -0.0015 6 6 3.8457 3.0482 0.0001 7 7 5.3108 3.0482 -0.0013 8 6 6.0444 3.0474 1.2668 9 6 5.9836 3.0490 -1.1691 10 8 5.3763 3.1119 -2.2206 11 6 7.4581 2.9736 -1.1717 12 6 8.1877 3.5402 -0.1194 13 6 9.5494 3.4777 -0.1201 14 6 10.2221 2.8319 -1.1761 15 6 11.6313 2.7590 -1.1780 16 1 12.2111 3.5019 -0.6504 17 6 12.2788 1.7221 -1.8649 18 7 11.6163 0.6471 -2.2002 19 14 14.0886 1.8777 -2.3006 20 1 14.9085 1.2183 -1.2526 21 1 14.3404 1.2244 -3.6102 22 1 14.4556 3.3141 -2.3853 23 6 9.4834 2.2587 -2.2300 24 6 8.1223 2.3316 -2.2238 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8901 27 1 -0.3633 0.5139 -0.8899 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5139 0.8899 30 1 1.3880 2.1185 0.0004 31 1 3.4829 3.5616 0.8904 32 1 3.4820 3.5626 -0.8895 33 1 6.1460 4.0705 1.6284 34 1 5.4994 2.4546 2.0015 35 1 7.0337 2.6161 1.1139 36 1 7.6708 4.0307 0.6921 37 1 10.1114 3.9185 0.6900 38 1 12.0643 -0.0703 -2.6751 39 1 9.9948 1.7623 -3.0415 40 1 7.5551 1.8929 -3.0315 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000611146073.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:54:36 Heat of formation + Delta-G solvation = -61.976630 kcal Electronic energy + Delta-G solvation = -22537.178505 eV Core-core repulsion = 19123.220604 eV Total energy + Delta-G solvation = -3413.957901 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.45083 -40.30887 -38.85502 -36.65506 -36.17659 -35.62897 -32.46113 -31.80379 -31.42503 -29.28582 -27.99308 -26.85647 -24.05200 -23.19069 -22.86532 -21.80955 -20.47814 -19.40208 -18.33654 -18.10884 -17.61139 -17.17483 -16.68424 -16.51249 -15.95398 -15.88615 -15.26439 -15.12524 -14.85697 -14.58269 -14.41120 -14.18126 -13.74484 -13.68012 -13.34692 -13.32531 -13.07165 -12.86068 -12.72007 -12.71368 -12.60753 -12.37567 -12.16641 -11.75704 -11.30872 -11.21774 -11.09410 -10.72209 -10.14503 -9.73227 -9.48551 -9.34625 -8.77058 -6.46216 0.50362 1.14444 1.37303 1.41902 1.54703 1.57401 1.76239 2.13402 2.19254 2.42813 2.74642 3.66974 3.83335 3.90077 4.12284 4.17514 4.18468 4.29981 4.36904 4.41309 4.49021 4.53218 4.70522 4.91577 4.97182 4.98061 5.03164 5.03378 5.19341 5.23810 5.27276 5.44289 5.51350 5.60140 5.78354 5.95490 6.01758 6.20932 6.42873 6.52925 6.57069 6.78808 6.91154 7.22749 7.31901 8.18761 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.031435 B = 0.003195 C = 0.003077 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 890.506253 B = 8761.386491 C = 9098.829623 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.109 3.891 3 N -0.716 5.716 4 C 0.486 3.514 5 O -0.584 6.584 6 C 0.097 3.903 7 N -0.601 5.601 8 C 0.065 3.935 9 C 0.575 3.425 10 O -0.603 6.603 11 C -0.289 4.289 12 C -0.048 4.048 13 C -0.247 4.247 14 C 0.100 3.900 15 C -0.475 4.475 16 H 0.093 0.907 17 C 0.032 3.968 18 N -0.809 5.809 19 Si 0.989 3.011 20 H -0.258 1.258 21 H -0.269 1.269 22 H -0.253 1.253 23 C -0.201 4.201 24 C -0.055 4.055 25 H 0.082 0.918 26 H 0.078 0.922 27 H 0.069 0.931 28 H 0.040 0.960 29 H 0.056 0.944 30 H 0.419 0.581 31 H 0.159 0.841 32 H 0.113 0.887 33 H 0.094 0.906 34 H 0.077 0.923 35 H 0.077 0.923 36 H 0.154 0.846 37 H 0.120 0.880 38 H 0.294 0.706 39 H 0.100 0.900 40 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.963 3.627 8.782 18.577 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.015 4.015 3 N -0.371 5.371 4 C 0.272 3.728 5 O -0.463 6.463 6 C -0.029 4.029 7 N -0.331 5.331 8 C -0.076 4.076 9 C 0.370 3.630 10 O -0.487 6.487 11 C -0.294 4.294 12 C -0.066 4.066 13 C -0.266 4.266 14 C 0.097 3.903 15 C -0.503 4.503 16 H 0.111 0.889 17 C -0.186 4.186 18 N -0.433 5.433 19 Si 0.808 3.192 20 H -0.182 1.182 21 H -0.193 1.193 22 H -0.176 1.176 23 C -0.221 4.221 24 C -0.075 4.075 25 H 0.101 0.899 26 H 0.097 0.903 27 H 0.088 0.912 28 H 0.059 0.941 29 H 0.074 0.926 30 H 0.257 0.743 31 H 0.176 0.824 32 H 0.131 0.869 33 H 0.112 0.888 34 H 0.095 0.905 35 H 0.095 0.905 36 H 0.171 0.829 37 H 0.138 0.862 38 H 0.104 0.896 39 H 0.118 0.882 40 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -15.730 2.755 8.175 17.940 hybrid contribution 0.536 -0.409 -0.690 0.965 sum -15.193 2.347 7.486 17.099 Atomic orbital electron populations 1.21933 0.91119 1.04222 1.03601 1.21353 0.96697 0.82627 1.00814 1.45923 1.06237 1.09871 1.75020 1.21875 0.82960 0.92871 0.75054 1.90732 1.56953 1.47925 1.50736 1.21520 0.80805 0.92803 1.07763 1.47292 1.05701 1.73431 1.06718 1.22562 0.98250 1.03125 0.83668 1.18579 0.87935 0.73590 0.82895 1.90593 1.71155 1.53976 1.32977 1.19118 0.91161 1.16975 1.02110 1.21291 0.93903 0.95802 0.95630 1.20996 0.94235 1.11107 1.00241 1.18142 0.94188 0.88230 0.89706 1.20113 0.92008 1.09825 1.28340 0.88881 1.27044 1.06135 0.93123 0.92275 1.69824 1.41161 1.04872 1.27402 0.85087 0.75180 0.80213 0.78678 1.18206 1.19334 1.17593 1.20870 0.92536 1.07991 1.00692 1.20450 0.94411 0.96666 0.95968 0.89933 0.90293 0.91225 0.94128 0.92555 0.74303 0.82375 0.86905 0.88802 0.90477 0.90486 0.82909 0.86206 0.89551 0.88159 0.90120 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.51 10.03 71.98 0.72 -0.78 16 2 C 0.11 2.08 6.39 86.38 0.55 2.63 16 3 N -0.72 -13.86 5.56 -463.08 -2.57 -16.43 16 4 C 0.49 14.18 7.90 87.65 0.69 14.87 16 5 O -0.58 -24.28 16.43 -3.03 -0.05 -24.33 16 6 C 0.10 2.39 5.94 85.63 0.51 2.90 16 7 N -0.60 -20.25 2.36 -854.80 -2.02 -22.27 16 8 C 0.07 1.76 8.79 127.77 1.12 2.88 16 9 C 0.58 25.99 7.43 86.73 0.64 26.64 16 10 O -0.60 -30.64 16.29 -4.00 -0.07 -30.71 16 11 C -0.29 -14.10 5.49 -19.93 -0.11 -14.21 16 12 C -0.05 -2.05 7.35 22.25 0.16 -1.89 16 13 C -0.25 -11.53 9.73 22.47 0.22 -11.31 16 14 C 0.10 5.40 5.56 -21.28 -0.12 5.28 16 15 C -0.48 -24.64 9.04 23.46 0.21 -24.43 16 16 H 0.09 4.48 7.91 -2.91 -0.02 4.46 16 17 C 0.03 1.58 5.13 85.35 0.44 2.02 16 18 N -0.81 -42.27 11.02 21.87 0.24 -42.03 16 19 Si 0.99 36.67 29.60 68.60 2.03 38.70 16 20 H -0.26 -9.07 7.11 99.48 0.71 -8.36 16 21 H -0.27 -9.68 7.11 99.48 0.71 -8.97 16 22 H -0.25 -9.07 7.11 99.48 0.71 -8.36 16 23 C -0.20 -11.30 8.63 22.47 0.19 -11.10 16 24 C -0.06 -3.02 9.53 22.25 0.21 -2.81 16 25 H 0.08 0.70 8.14 -2.39 -0.02 0.68 16 26 H 0.08 0.54 8.14 -2.39 -0.02 0.52 16 27 H 0.07 0.62 8.14 -2.39 -0.02 0.60 16 28 H 0.04 0.98 8.14 -2.39 -0.02 0.97 16 29 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 30 H 0.42 4.52 8.47 -92.71 -0.79 3.73 16 31 H 0.16 2.05 8.07 -2.39 -0.02 2.03 16 32 H 0.11 2.81 7.38 -2.38 -0.02 2.79 16 33 H 0.09 1.82 7.42 -2.39 -0.02 1.80 16 34 H 0.08 1.77 8.11 -2.39 -0.02 1.76 16 35 H 0.08 2.56 4.72 -2.39 -0.01 2.55 16 36 H 0.15 5.01 4.77 -2.91 -0.01 5.00 16 37 H 0.12 4.96 8.06 -2.91 -0.02 4.93 16 38 H 0.29 13.81 8.29 -92.71 -0.77 13.04 16 39 H 0.10 5.84 6.23 -2.91 -0.02 5.82 16 40 H 0.08 4.46 7.94 -2.91 -0.02 4.43 16 Total: -1.00 -79.09 337.58 3.30 -75.79 By element: Atomic # 1 Polarization: 30.31 SS G_CDS: 0.28 Total: 30.59 kcal Atomic # 6 Polarization: -14.77 SS G_CDS: 5.45 Total: -9.32 kcal Atomic # 7 Polarization: -76.38 SS G_CDS: -4.35 Total: -80.73 kcal Atomic # 8 Polarization: -54.92 SS G_CDS: -0.11 Total: -55.03 kcal Atomic # 14 Polarization: 36.67 SS G_CDS: 2.03 Total: 38.70 kcal Total: -79.09 3.30 -75.79 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000611146073.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.814 kcal (2) G-P(sol) polarization free energy of solvation -79.091 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.276 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.300 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.791 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.977 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds