Wall clock time and date at job start Tue Mar 31 2020 02:52:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.34781 * 119.99777 * 2 1 4 4 O 1.21283 * 120.00188 * 0.02562 * 3 2 1 5 5 C 1.50697 * 119.99636 * 179.97438 * 3 2 1 6 6 H 1.08995 * 109.47367 * 299.99956 * 5 3 2 7 7 C 1.52990 * 109.47311 * 60.00557 * 5 3 2 8 8 N 1.46505 * 109.46867 * 180.02562 * 5 3 2 9 9 C 1.34774 * 120.00244 * 155.00196 * 8 5 3 10 10 O 1.21283 * 119.99704 * 359.97438 * 9 8 5 11 11 C 1.50695 * 120.00256 * 179.97438 * 9 8 5 12 12 C 1.50703 * 109.47201 * 179.97438 * 11 9 8 13 13 C 1.37630 * 120.12886 * 265.00019 * 12 11 9 14 14 C 1.38617 * 120.24594 * 180.29951 * 13 12 11 15 15 C 1.38655 * 120.49962 * 359.44217 * 14 13 12 16 16 C 1.37604 * 120.25111 * 0.55942 * 15 14 13 17 17 C 1.40697 * 120.12145 * 85.02173 * 12 11 9 18 18 C 1.41393 * 120.25024 * 359.96098 * 17 12 11 19 19 H 1.08004 * 119.99701 * 334.08118 * 18 17 12 20 20 C 1.39940 * 120.00563 * 154.08903 * 18 17 12 21 21 N 1.30822 * 119.99912 * 343.60732 * 20 18 17 22 22 Si 1.86803 * 120.00192 * 163.61835 * 20 18 17 23 23 H 1.48494 * 109.47012 * 359.97438 * 22 20 18 24 24 H 1.48492 * 109.47407 * 119.99663 * 22 20 18 25 25 H 1.48508 * 109.46756 * 239.99409 * 22 20 18 26 26 H 1.09004 * 109.47444 * 299.99953 * 1 2 3 27 27 H 1.09003 * 109.47114 * 59.99734 * 1 2 3 28 28 H 1.09003 * 109.47329 * 180.02562 * 1 2 3 29 29 H 0.96995 * 120.00143 * 180.02562 * 2 1 3 30 30 H 1.09007 * 109.47105 * 299.99804 * 7 5 3 31 31 H 1.08995 * 109.47395 * 59.99417 * 7 5 3 32 32 H 1.09004 * 109.47322 * 179.97438 * 7 5 3 33 33 H 0.97004 * 120.00270 * 335.00002 * 8 5 3 34 34 H 1.09003 * 109.47324 * 59.99832 * 11 9 8 35 35 H 1.09000 * 109.47440 * 299.99911 * 11 9 8 36 36 H 1.07994 * 119.88008 * 0.02562 * 13 12 11 37 37 H 1.08001 * 119.74839 * 179.70479 * 14 13 12 38 38 H 1.08004 * 119.87487 * 180.29906 * 15 14 13 39 39 H 1.07992 * 120.12974 * 179.74704 * 16 15 14 40 40 H 0.97001 * 120.00439 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1673 0.0000 4 8 1.5324 2.2176 0.0005 5 6 3.6458 1.1672 0.0006 6 1 4.0088 0.6536 0.8908 7 6 4.1563 0.4459 -1.2483 8 7 4.1342 2.5485 0.0011 9 6 5.3559 2.8312 0.4948 10 8 6.0509 1.9421 0.9392 11 6 5.8584 4.2519 0.4948 12 6 7.2394 4.2963 1.0965 13 6 7.4022 4.5867 2.4319 14 6 8.6717 4.6343 2.9865 15 6 9.7900 4.3792 2.2074 16 6 9.6510 4.0867 0.8700 17 6 8.3673 4.0414 0.2950 18 6 8.2124 3.7415 -1.0781 19 1 7.2926 3.3014 -1.4342 20 6 9.2507 4.0148 -1.9756 21 7 10.2191 4.8232 -1.6290 22 14 9.2539 3.2254 -3.6687 23 1 8.0569 2.3585 -3.8128 24 1 9.2265 4.2848 -4.7088 25 1 10.4812 2.4050 -3.8299 26 1 -0.3634 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3634 -1.0277 0.0005 29 1 1.9500 -0.8400 -0.0004 30 1 3.7930 -0.5819 -1.2483 31 1 3.7933 0.9595 -2.1385 32 1 5.2463 0.4462 -1.2481 33 1 3.5782 3.2597 -0.3540 34 1 5.1857 4.8753 1.0838 35 1 5.8957 4.6242 -0.5290 36 1 6.5379 4.7827 3.0491 37 1 8.7904 4.8677 4.0343 38 1 10.7741 4.4142 2.6510 39 1 10.5236 3.8923 0.2641 40 1 10.9390 5.0124 -2.2510 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000776837731.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:52:48 Heat of formation + Delta-G solvation = -61.711073 kcal Electronic energy + Delta-G solvation = -22895.083147 eV Core-core repulsion = 19481.136761 eV Total energy + Delta-G solvation = -3413.946386 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.27651 -38.88838 -37.27515 -34.91431 -34.64370 -33.57526 -31.86372 -30.48679 -29.39225 -27.13858 -26.69225 -25.01864 -23.82451 -20.93409 -20.81000 -20.15551 -19.41667 -17.84291 -17.08298 -16.59567 -15.98611 -15.55084 -15.41465 -15.04982 -14.56088 -14.38547 -13.88024 -13.67057 -13.47956 -13.09967 -13.04780 -12.62530 -12.55536 -12.39283 -12.31482 -11.71287 -11.62227 -11.52438 -11.12531 -10.96269 -10.94127 -10.64165 -10.35005 -10.01642 -9.43425 -9.43235 -9.32650 -9.17858 -9.11982 -8.77886 -7.26259 -7.24396 -6.69564 -4.29777 2.40253 2.75388 2.85305 3.05629 3.09785 3.14452 3.30341 3.35860 3.73017 3.96771 4.46926 4.70470 4.91746 5.04722 5.11870 5.21890 5.42707 5.48848 5.61186 5.78320 5.88525 6.06558 6.09692 6.17793 6.21434 6.34625 6.49636 6.56315 6.70499 6.85397 7.13304 7.17441 7.34590 7.47158 7.69075 7.91234 7.94859 8.01158 8.12596 8.18029 8.36508 8.69601 8.86636 8.96483 9.06403 10.24808 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.016059 B = 0.004700 C = 0.003855 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1743.180359 B = 5956.595172 C = 7262.468650 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.088 3.912 2 N -0.734 5.734 3 C 0.512 3.488 4 O -0.534 6.534 5 C 0.127 3.873 6 H 0.112 0.888 7 C -0.160 4.160 8 N -0.729 5.729 9 C 0.520 3.480 10 O -0.522 6.522 11 C -0.070 4.070 12 C -0.180 4.180 13 C -0.081 4.081 14 C -0.239 4.239 15 C -0.107 4.107 16 C -0.160 4.160 17 C 0.129 3.871 18 C -0.456 4.456 19 H 0.075 0.925 20 C 0.077 3.923 21 N -0.796 5.796 22 Si 0.902 3.098 23 H -0.262 1.262 24 H -0.275 1.275 25 H -0.273 1.273 26 H 0.060 0.940 27 H 0.060 0.940 28 H 0.075 0.925 29 H 0.404 0.596 30 H 0.064 0.936 31 H 0.062 0.938 32 H 0.081 0.919 33 H 0.405 0.595 34 H 0.077 0.923 35 H 0.098 0.902 36 H 0.084 0.916 37 H 0.085 0.915 38 H 0.086 0.914 39 H 0.116 0.884 40 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.886 -8.411 -0.942 16.262 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 N -0.386 5.386 3 C 0.298 3.702 4 O -0.410 6.410 5 C 0.018 3.982 6 H 0.129 0.871 7 C -0.219 4.219 8 N -0.385 5.385 9 C 0.308 3.692 10 O -0.396 6.396 11 C -0.110 4.110 12 C -0.181 4.181 13 C -0.100 4.100 14 C -0.259 4.259 15 C -0.126 4.126 16 C -0.179 4.179 17 C 0.127 3.873 18 C -0.486 4.486 19 H 0.093 0.907 20 C -0.140 4.140 21 N -0.421 5.421 22 Si 0.727 3.273 23 H -0.185 1.185 24 H -0.201 1.201 25 H -0.198 1.198 26 H 0.078 0.922 27 H 0.078 0.922 28 H 0.094 0.906 29 H 0.238 0.762 30 H 0.083 0.917 31 H 0.081 0.919 32 H 0.100 0.900 33 H 0.241 0.759 34 H 0.096 0.904 35 H 0.116 0.884 36 H 0.103 0.897 37 H 0.103 0.897 38 H 0.104 0.896 39 H 0.134 0.866 40 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -13.608 -8.171 -0.707 15.888 hybrid contribution -0.025 -0.469 -0.948 1.058 sum -13.633 -8.639 -1.655 16.225 Atomic orbital electron populations 1.21545 0.79435 1.02239 1.02421 1.45748 1.07816 1.08759 1.76316 1.20882 0.90236 0.83809 0.75287 1.90695 1.70162 1.31242 1.48906 1.20623 0.89252 0.86734 1.01572 0.87074 1.22156 1.03916 0.99302 0.96489 1.45970 1.18922 1.07696 1.65952 1.21283 0.79544 0.92602 0.75787 1.90669 1.55423 1.48555 1.44931 1.20259 0.95978 0.91445 1.03283 1.19052 0.92297 1.12658 0.94134 1.20309 0.95527 1.00093 0.94023 1.20303 0.93000 1.14734 0.97838 1.20675 0.96229 1.00845 0.94825 1.21288 0.98082 1.05375 0.93153 1.17337 0.90424 0.87086 0.92478 1.19504 1.00728 1.36293 0.92074 0.90718 1.25872 0.94527 0.93023 1.00602 1.69830 1.09688 1.25869 1.36757 0.86361 0.79410 0.79903 0.81638 1.18536 1.20063 1.19771 0.92176 0.92153 0.90591 0.76168 0.91711 0.91930 0.90032 0.75854 0.90419 0.88417 0.89746 0.89699 0.89627 0.86568 0.91066 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.61 10.70 59.85 0.64 1.25 16 2 N -0.73 -6.18 5.61 -67.07 -0.38 -6.56 16 3 C 0.51 6.30 7.22 -10.98 -0.08 6.22 16 4 O -0.53 -8.31 15.84 5.55 0.09 -8.22 16 5 C 0.13 1.69 2.98 -69.09 -0.21 1.48 16 6 H 0.11 1.52 7.58 -51.93 -0.39 1.13 16 7 C -0.16 -1.89 9.38 37.15 0.35 -1.54 16 8 N -0.73 -11.53 4.95 -54.94 -0.27 -11.80 16 9 C 0.52 10.27 7.43 -10.99 -0.08 10.18 16 10 O -0.52 -12.20 15.70 5.55 0.09 -12.11 16 11 C -0.07 -1.41 5.18 -29.04 -0.15 -1.56 16 12 C -0.18 -4.38 4.43 -103.91 -0.46 -4.84 16 13 C -0.08 -1.91 9.66 -39.66 -0.38 -2.29 16 14 C -0.24 -5.66 10.05 -39.29 -0.39 -6.05 16 15 C -0.11 -2.65 10.02 -39.66 -0.40 -3.05 16 16 C -0.16 -4.30 8.68 -38.87 -0.34 -4.64 16 17 C 0.13 3.47 5.56 -106.82 -0.59 2.88 16 18 C -0.46 -12.03 8.14 -37.74 -0.31 -12.34 16 19 H 0.07 1.91 6.68 -52.48 -0.35 1.56 16 20 C 0.08 1.94 5.16 -17.34 -0.09 1.85 16 21 N -0.80 -20.66 10.97 55.55 0.61 -20.05 16 22 Si 0.90 18.87 29.59 -169.99 -5.03 13.84 16 23 H -0.26 -5.43 7.11 56.52 0.40 -5.03 16 24 H -0.28 -5.62 7.11 56.52 0.40 -5.22 16 25 H -0.27 -5.65 7.11 56.52 0.40 -5.25 16 26 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 27 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 28 H 0.08 0.29 8.14 -51.93 -0.42 -0.13 16 29 H 0.40 2.29 8.25 -40.82 -0.34 1.95 16 30 H 0.06 0.54 7.56 -51.92 -0.39 0.15 16 31 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 32 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 33 H 0.41 5.93 7.79 -40.82 -0.32 5.61 16 34 H 0.08 1.35 8.05 -51.93 -0.42 0.93 16 35 H 0.10 1.94 7.06 -51.93 -0.37 1.57 16 36 H 0.08 1.76 8.06 -52.49 -0.42 1.34 16 37 H 0.08 1.78 8.06 -52.49 -0.42 1.36 16 38 H 0.09 1.89 8.06 -52.48 -0.42 1.47 16 39 H 0.12 3.21 6.22 -52.49 -0.33 2.88 16 40 H 0.28 6.58 8.30 -40.82 -0.34 6.25 16 LS Contribution 340.94 15.07 5.14 5.14 Total: -1.00 -32.82 340.94 -7.67 -40.48 By element: Atomic # 1 Polarization: 17.15 SS G_CDS: -5.42 Total: 11.73 kcal Atomic # 6 Polarization: -9.96 SS G_CDS: -2.49 Total: -12.45 kcal Atomic # 7 Polarization: -38.37 SS G_CDS: -0.04 Total: -38.41 kcal Atomic # 8 Polarization: -20.51 SS G_CDS: 0.18 Total: -20.34 kcal Atomic # 14 Polarization: 18.87 SS G_CDS: -5.03 Total: 13.84 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -32.82 -7.67 -40.48 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000776837731.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.227 kcal (2) G-P(sol) polarization free energy of solvation -32.817 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.044 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.668 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.485 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.711 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds