Wall clock time and date at job start Tue Mar 31 2020 02:56:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 O 1.21283 * 119.99770 * 2 1 4 4 N 1.34777 * 120.00262 * 179.97438 * 2 1 3 5 5 C 1.46503 * 120.00051 * 180.02562 * 4 2 1 6 6 C 1.53002 * 109.46820 * 180.02562 * 5 4 2 7 7 N 1.46503 * 109.46820 * 179.97438 * 6 5 4 8 8 C 1.34777 * 120.00051 * 179.97438 * 7 6 5 9 9 O 1.21283 * 119.99353 * 0.02562 * 8 7 6 10 10 C 1.50692 * 119.99931 * 180.02562 * 8 7 6 11 11 C 1.50703 * 109.47000 * 180.02562 * 10 8 7 12 12 C 1.37645 * 120.13007 * 265.30719 * 11 10 8 13 13 C 1.38606 * 120.24649 * 180.32491 * 12 11 10 14 14 C 1.38653 * 120.50471 * 359.65965 * 13 12 11 15 15 C 1.37600 * 120.24898 * 0.02562 * 14 13 12 16 16 C 1.40696 * 120.12867 * 84.99790 * 11 10 8 17 17 C 1.41400 * 120.24530 * 359.97438 * 16 11 10 18 18 H 1.08003 * 119.99719 * 25.87056 * 17 16 11 19 19 C 1.39942 * 120.00205 * 205.88123 * 17 16 11 20 20 N 1.30821 * 119.99968 * 16.29869 * 19 17 16 21 21 Si 1.86803 * 120.00009 * 196.30797 * 19 17 16 22 22 H 1.48496 * 109.47194 * 265.18190 * 21 19 17 23 23 H 1.48505 * 109.46937 * 25.18007 * 21 19 17 24 24 H 1.48498 * 109.47234 * 145.18150 * 21 19 17 25 25 H 1.08999 * 109.47261 * 180.02562 * 1 2 3 26 26 H 1.08997 * 109.47786 * 300.00317 * 1 2 3 27 27 H 1.08999 * 109.47511 * 60.00604 * 1 2 3 28 28 H 0.97002 * 119.99800 * 0.02562 * 4 2 1 29 29 H 1.08994 * 109.47116 * 60.00349 * 5 4 2 30 30 H 1.08997 * 109.47258 * 300.00182 * 5 4 2 31 31 H 1.08994 * 109.47287 * 60.00090 * 6 5 4 32 32 H 1.08997 * 109.47057 * 299.99942 * 6 5 4 33 33 H 0.97002 * 120.00149 * 0.02562 * 7 6 5 34 34 H 1.09000 * 109.47297 * 60.00731 * 10 8 7 35 35 H 1.08997 * 109.47185 * 300.00030 * 10 8 7 36 36 H 1.07994 * 119.87429 * 0.02562 * 12 11 10 37 37 H 1.08002 * 119.74758 * 179.69746 * 13 12 11 38 38 H 1.07998 * 119.87893 * 180.02562 * 14 13 12 39 39 H 1.07997 * 120.12664 * 180.02562 * 15 14 13 40 40 H 0.97002 * 120.00001 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.1133 1.0504 0.0000 4 7 2.1809 -1.1672 0.0005 5 6 3.6459 -1.1671 0.0011 6 6 4.1559 -2.6096 0.0010 7 7 5.6209 -2.6096 0.0009 8 6 6.2949 -3.7768 0.0013 9 8 5.6884 -4.8271 0.0013 10 6 7.8018 -3.7767 0.0019 11 6 8.3042 -5.1975 0.0016 12 6 8.6259 -5.8168 1.1880 13 6 9.0946 -7.1212 1.1901 14 6 9.2382 -7.8193 0.0007 15 6 8.9165 -7.2224 -1.1966 16 6 8.4400 -5.8983 -1.2108 17 6 8.1058 -5.2749 -2.4351 18 1 8.1515 -4.1994 -2.5236 19 6 7.7158 -6.0512 -3.5322 20 7 7.3519 -7.2955 -3.3566 21 14 7.7149 -5.3109 -5.2472 22 1 6.3559 -4.8053 -5.5675 23 1 8.6863 -4.1890 -5.3025 24 1 8.1020 -6.3499 -6.2351 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3634 0.5138 0.8899 27 1 -0.3634 0.5137 -0.8900 28 1 1.6959 -2.0072 0.0005 29 1 4.0088 -0.6532 0.8911 30 1 4.0096 -0.6535 -0.8888 31 1 3.7929 -3.1233 -0.8892 32 1 3.7922 -3.1236 0.8907 33 1 6.1059 -1.7695 0.0013 34 1 8.1648 -3.2628 0.8919 35 1 8.1654 -3.2630 -0.8880 36 1 8.5173 -5.2827 2.1203 37 1 9.3493 -7.5977 2.1252 38 1 9.6039 -8.8354 0.0141 39 1 9.0287 -7.7682 -2.1217 40 1 7.0819 -7.8338 -4.1171 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000777275422.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:56:17 Heat of formation + Delta-G solvation = -90.598700 kcal Electronic energy + Delta-G solvation = -22219.350877 eV Core-core repulsion = 18804.151829 eV Total energy + Delta-G solvation = -3415.199048 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.87993 -40.48653 -39.12278 -36.87384 -35.46193 -34.93163 -33.44388 -31.55900 -31.30470 -29.50744 -27.97060 -26.76003 -23.82333 -22.81362 -22.29821 -21.56385 -20.91397 -19.07586 -18.11945 -17.81421 -17.29966 -17.02257 -16.83992 -16.61537 -16.23082 -16.06624 -15.52555 -15.29541 -14.74104 -14.54389 -14.50744 -14.35845 -13.55353 -13.29932 -13.28480 -13.27802 -12.94606 -12.83722 -12.81267 -12.72210 -12.54087 -12.44845 -12.10205 -11.30476 -11.16481 -11.10636 -10.99995 -10.74163 -10.23056 -10.02953 -9.20748 -9.15803 -8.55944 -6.25057 1.01085 1.14330 1.36654 1.48882 1.54619 1.60300 1.88303 1.94117 2.21098 2.71279 2.84323 3.62019 3.77848 3.98121 4.00085 4.17587 4.36980 4.42234 4.49025 4.53252 4.63291 4.66834 4.74275 4.81797 4.82664 4.87827 5.03992 5.09470 5.26670 5.31794 5.38379 5.52732 5.57085 5.80850 6.05962 6.16173 6.23771 6.45295 6.49443 6.67467 6.77673 7.01049 7.14075 7.19357 7.48722 8.41676 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.015218 B = 0.003836 C = 0.003265 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1839.461813 B = 7297.719329 C = 8574.811515 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.506 3.494 3 O -0.601 6.601 4 N -0.719 5.719 5 C 0.118 3.882 6 C 0.117 3.883 7 N -0.725 5.725 8 C 0.519 3.481 9 O -0.570 6.570 10 C -0.069 4.069 11 C -0.187 4.187 12 C -0.091 4.091 13 C -0.245 4.245 14 C -0.117 4.117 15 C -0.196 4.196 16 C 0.096 3.904 17 C -0.485 4.485 18 H 0.083 0.917 19 C 0.032 3.968 20 N -0.832 5.832 21 Si 0.973 3.027 22 H -0.270 1.270 23 H -0.250 1.250 24 H -0.270 1.270 25 H 0.104 0.896 26 H 0.104 0.896 27 H 0.102 0.898 28 H 0.418 0.582 29 H 0.077 0.923 30 H 0.070 0.930 31 H 0.057 0.943 32 H 0.070 0.930 33 H 0.416 0.584 34 H 0.116 0.884 35 H 0.101 0.899 36 H 0.118 0.882 37 H 0.114 0.886 38 H 0.103 0.897 39 H 0.095 0.905 40 H 0.282 0.718 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.734 12.009 4.544 16.113 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.295 3.705 3 O -0.482 6.482 4 N -0.373 5.373 5 C -0.006 4.006 6 C -0.007 4.007 7 N -0.380 5.380 8 C 0.306 3.694 9 O -0.448 6.448 10 C -0.108 4.108 11 C -0.189 4.189 12 C -0.109 4.109 13 C -0.264 4.264 14 C -0.135 4.135 15 C -0.216 4.216 16 C 0.094 3.906 17 C -0.515 4.515 18 H 0.101 0.899 19 C -0.182 4.182 20 N -0.458 5.458 21 Si 0.794 3.206 22 H -0.195 1.195 23 H -0.173 1.173 24 H -0.195 1.195 25 H 0.122 0.878 26 H 0.122 0.878 27 H 0.120 0.880 28 H 0.255 0.745 29 H 0.096 0.904 30 H 0.088 0.912 31 H 0.076 0.924 32 H 0.088 0.912 33 H 0.253 0.747 34 H 0.134 0.866 35 H 0.119 0.881 36 H 0.136 0.864 37 H 0.132 0.868 38 H 0.121 0.879 39 H 0.113 0.887 40 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -9.842 11.777 4.422 15.972 hybrid contribution 0.004 -0.425 -0.906 1.001 sum -9.838 11.352 3.516 15.428 Atomic orbital electron populations 1.21875 0.87863 1.06430 1.06078 1.21621 0.92385 0.82481 0.74031 1.90712 1.72136 1.33148 1.52230 1.45966 1.06670 1.09798 1.74863 1.21274 0.81173 0.95125 1.03077 1.21260 0.81036 0.96136 1.02307 1.45686 1.06491 1.08894 1.76946 1.21132 0.91048 0.82935 0.74237 1.90697 1.71103 1.33389 1.49590 1.20305 0.89937 0.95719 1.04861 1.19489 1.09561 0.96978 0.92835 1.20747 0.98620 0.95027 0.96545 1.20716 1.12413 0.96375 0.96901 1.20948 1.00540 0.98555 0.93500 1.21302 1.05768 0.97850 0.96678 1.17750 0.87938 0.91950 0.92943 1.19731 1.41303 0.94894 0.95542 0.89878 1.26735 0.91789 0.94817 1.04850 1.69936 1.32063 1.09825 1.33988 0.85333 0.79410 0.79318 0.76505 1.19470 1.17323 1.19502 0.87766 0.87754 0.87970 0.74502 0.90447 0.91199 0.92438 0.91218 0.74746 0.86565 0.88128 0.86431 0.86783 0.87856 0.88665 0.90748 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.47 10.39 71.23 0.74 -0.73 16 2 C 0.51 9.44 7.94 87.65 0.70 10.13 16 3 O -0.60 -17.25 17.10 -3.04 -0.05 -17.30 16 4 N -0.72 -11.49 5.56 -463.07 -2.57 -14.06 16 5 C 0.12 2.23 5.79 86.38 0.50 2.73 16 6 C 0.12 2.73 5.79 86.38 0.50 3.23 16 7 N -0.72 -19.22 5.56 -463.07 -2.57 -21.79 16 8 C 0.52 19.65 7.82 87.65 0.69 20.34 16 9 O -0.57 -28.26 16.03 -3.04 -0.05 -28.31 16 10 C -0.07 -2.51 5.35 29.10 0.16 -2.35 16 11 C -0.19 -8.82 4.43 -19.40 -0.09 -8.90 16 12 C -0.09 -4.05 9.66 22.22 0.21 -3.84 16 13 C -0.24 -11.12 10.05 22.46 0.23 -10.89 16 14 C -0.12 -5.79 10.02 22.22 0.22 -5.56 16 15 C -0.20 -10.88 8.68 22.73 0.20 -10.68 16 16 C 0.10 5.24 5.56 -21.29 -0.12 5.12 16 17 C -0.48 -25.80 8.46 23.46 0.20 -25.60 16 18 H 0.08 4.09 6.36 -2.91 -0.02 4.07 16 19 C 0.03 1.65 5.16 85.26 0.44 2.09 16 20 N -0.83 -46.01 10.98 21.83 0.24 -45.77 16 21 Si 0.97 39.04 29.59 68.60 2.03 41.07 16 22 H -0.27 -10.58 7.11 99.48 0.71 -9.88 16 23 H -0.25 -9.48 7.11 99.48 0.71 -8.77 16 24 H -0.27 -10.49 7.11 99.48 0.71 -9.78 16 25 H 0.10 0.38 7.91 -2.39 -0.02 0.36 16 26 H 0.10 0.80 8.14 -2.39 -0.02 0.78 16 27 H 0.10 0.83 8.14 -2.39 -0.02 0.81 16 28 H 0.42 4.48 8.31 -92.71 -0.77 3.71 16 29 H 0.08 1.44 8.14 -2.39 -0.02 1.43 16 30 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 31 H 0.06 1.53 8.14 -2.39 -0.02 1.52 16 32 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 33 H 0.42 8.00 8.47 -92.71 -0.79 7.22 16 34 H 0.12 3.23 8.06 -2.39 -0.02 3.21 16 35 H 0.10 3.50 6.48 -2.39 -0.02 3.49 16 36 H 0.12 4.35 8.06 -2.91 -0.02 4.33 16 37 H 0.11 4.42 8.06 -2.91 -0.02 4.40 16 38 H 0.10 4.55 8.06 -2.91 -0.02 4.53 16 39 H 0.10 5.53 6.23 -2.91 -0.02 5.52 16 40 H 0.28 14.26 8.30 -92.71 -0.77 13.49 16 Total: -1.00 -78.73 344.39 1.11 -77.61 By element: Atomic # 1 Polarization: 33.95 SS G_CDS: -0.48 Total: 33.47 kcal Atomic # 6 Polarization: -29.49 SS G_CDS: 4.57 Total: -24.92 kcal Atomic # 7 Polarization: -76.72 SS G_CDS: -4.91 Total: -81.63 kcal Atomic # 8 Polarization: -45.51 SS G_CDS: -0.10 Total: -45.61 kcal Atomic # 14 Polarization: 39.04 SS G_CDS: 2.03 Total: 41.07 kcal Total: -78.73 1.11 -77.61 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000777275422.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.984 kcal (2) G-P(sol) polarization free energy of solvation -78.728 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.712 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.114 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.615 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.599 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds