Wall clock time and date at job start Tue Mar 31 2020 02:58:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.46501 * 120.00443 * 2 1 4 4 C 1.53000 * 109.47087 * 270.00601 * 3 2 1 5 5 C 1.50702 * 109.46574 * 180.02562 * 4 3 2 6 6 N 1.34779 * 119.99576 * 179.97438 * 5 4 3 7 7 O 1.21279 * 120.00311 * 359.97438 * 5 4 3 8 8 C 1.34784 * 119.99589 * 180.02562 * 2 1 3 9 9 O 1.21280 * 119.99871 * 179.97438 * 8 2 1 10 10 C 1.50701 * 119.99906 * 359.97438 * 8 2 1 11 11 C 1.50700 * 109.46813 * 180.02562 * 10 8 2 12 12 C 1.37640 * 120.13180 * 265.30632 * 11 10 8 13 13 C 1.38613 * 120.24862 * 180.32332 * 12 11 10 14 14 C 1.38655 * 120.50174 * 359.67182 * 13 12 11 15 15 C 1.37598 * 120.24576 * 359.97438 * 14 13 12 16 16 C 1.40702 * 120.12495 * 85.00356 * 11 10 8 17 17 C 1.41393 * 120.24620 * 359.97406 * 16 11 10 18 18 H 1.07999 * 119.99787 * 29.07372 * 17 16 11 19 19 C 1.39938 * 120.00244 * 209.07592 * 17 16 11 20 20 N 1.30823 * 120.00241 * 197.10039 * 19 17 16 21 21 Si 1.86803 * 119.99882 * 17.09514 * 19 17 16 22 22 H 1.48495 * 109.47432 * 270.00073 * 21 19 17 23 23 H 1.48498 * 109.46929 * 30.00589 * 21 19 17 24 24 H 1.48504 * 109.46998 * 150.00206 * 21 19 17 25 25 H 1.09005 * 109.46741 * 270.00052 * 1 2 3 26 26 H 1.09001 * 109.47242 * 29.99066 * 1 2 3 27 27 H 1.08995 * 109.47992 * 149.99628 * 1 2 3 28 28 H 1.08995 * 109.46783 * 30.00742 * 3 2 1 29 29 H 1.09000 * 109.46921 * 150.00704 * 3 2 1 30 30 H 1.09004 * 109.47253 * 299.99623 * 4 3 2 31 31 H 1.08994 * 109.47275 * 59.99839 * 4 3 2 32 32 H 0.96999 * 120.00437 * 0.02562 * 6 5 4 33 33 H 0.97001 * 119.99819 * 179.97438 * 6 5 4 34 34 H 1.08999 * 109.47299 * 60.00523 * 10 8 2 35 35 H 1.08998 * 109.47401 * 299.99992 * 10 8 2 36 36 H 1.08005 * 119.87130 * 0.02562 * 12 11 10 37 37 H 1.08001 * 119.74473 * 179.69460 * 13 12 11 38 38 H 1.08002 * 119.87493 * 180.02562 * 14 13 12 39 39 H 1.08003 * 120.12022 * 180.02562 * 15 14 13 40 40 H 0.97004 * 119.99819 * 355.45620 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.4525 1.7104 -1.4425 5 6 3.2066 3.0151 -1.4424 6 7 3.5441 3.5985 -2.6096 7 8 3.5099 3.5402 -0.3920 8 6 2.1388 -1.1673 -0.0005 9 8 3.3516 -1.1674 -0.0010 10 6 1.3852 -2.4724 -0.0005 11 6 2.3645 -3.6178 -0.0005 12 6 2.7394 -4.2063 -1.1869 13 6 3.6348 -5.2644 -1.1892 14 6 4.1679 -5.7378 0.0000 15 6 3.8129 -5.1600 1.1973 16 6 2.9039 -4.0857 1.2118 17 6 2.5314 -3.4845 2.4362 18 1 1.5566 -3.0316 2.5408 19 6 3.4259 -3.4762 3.5123 20 7 2.9912 -3.2352 4.7224 21 14 5.2408 -3.8095 3.2209 22 1 5.5014 -5.2667 3.3373 23 1 5.6169 -3.3463 1.8611 24 1 6.0467 -3.0801 4.2328 25 1 -0.3633 0.0000 1.0277 26 1 -0.3634 0.8901 -0.5137 27 1 -0.3635 -0.8899 -0.5138 28 1 1.6086 2.0283 0.5139 29 1 3.1500 1.1382 0.5137 30 1 3.0415 0.9507 -1.9564 31 1 1.5001 1.8408 -1.9562 32 1 3.3012 3.1788 -3.4497 33 1 4.0292 4.4385 -2.6095 34 1 0.7583 -2.5299 -0.8903 35 1 0.7589 -2.5303 0.8897 36 1 2.3307 -3.8453 -2.1192 37 1 3.9196 -5.7234 -2.1245 38 1 4.8651 -6.5625 -0.0136 39 1 4.2297 -5.5300 2.1223 40 1 2.0617 -2.9974 4.8655 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000804743176.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:58:17 Heat of formation + Delta-G solvation = -90.568445 kcal Electronic energy + Delta-G solvation = -23139.570776 eV Core-core repulsion = 19724.373041 eV Total energy + Delta-G solvation = -3415.197736 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.16399 -40.39999 -39.35245 -36.65830 -35.58953 -34.70640 -33.78199 -32.22337 -31.96192 -28.68515 -27.63421 -26.50407 -25.03564 -23.18702 -21.81647 -21.32111 -20.14520 -19.84043 -18.39152 -18.08550 -17.79656 -17.28443 -16.75858 -16.47820 -16.33262 -16.08191 -15.69066 -15.43076 -14.83823 -14.47406 -14.31652 -13.99627 -13.97130 -13.83516 -13.62593 -13.27434 -13.17495 -12.99840 -12.74550 -12.58463 -12.17761 -12.10817 -11.92169 -11.58546 -11.18741 -11.12757 -10.85495 -10.72665 -10.68751 -9.65786 -9.55111 -9.32231 -9.13968 -6.47811 0.82731 0.92142 1.29543 1.50645 1.58674 1.71126 1.78778 2.02836 2.15034 2.69550 2.75723 3.49635 3.80084 3.85793 4.09226 4.14059 4.24863 4.28148 4.39588 4.47490 4.51539 4.55269 4.66571 4.71785 4.80315 4.90485 4.97245 4.98991 5.01485 5.26674 5.52021 5.60708 5.63150 5.84538 5.87351 5.91338 6.04516 6.20516 6.41738 6.43603 6.51384 6.75882 6.89774 7.30944 7.36631 8.07683 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.015593 B = 0.004982 C = 0.004587 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1795.289650 B = 5618.424151 C = 6102.799327 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.072 3.928 2 N -0.622 5.622 3 C 0.130 3.870 4 C -0.144 4.144 5 C 0.519 3.481 6 N -0.834 5.834 7 O -0.596 6.596 8 C 0.514 3.486 9 O -0.572 6.572 10 C -0.066 4.066 11 C -0.176 4.176 12 C -0.077 4.077 13 C -0.230 4.230 14 C -0.089 4.089 15 C -0.267 4.267 16 C 0.084 3.916 17 C -0.533 4.533 18 H 0.058 0.942 19 C 0.013 3.987 20 N -0.855 5.855 21 Si 1.097 2.903 22 H -0.255 1.255 23 H -0.279 1.279 24 H -0.289 1.289 25 H 0.051 0.949 26 H 0.103 0.897 27 H 0.090 0.910 28 H 0.092 0.908 29 H 0.042 0.958 30 H 0.094 0.906 31 H 0.136 0.864 32 H 0.419 0.581 33 H 0.407 0.593 34 H 0.123 0.877 35 H 0.085 0.915 36 H 0.129 0.871 37 H 0.130 0.870 38 H 0.123 0.877 39 H 0.096 0.904 40 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.669 8.741 -17.386 20.570 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 N -0.356 5.356 3 C 0.006 3.994 4 C -0.185 4.185 5 C 0.304 3.696 6 N -0.399 5.399 7 O -0.477 6.477 8 C 0.304 3.696 9 O -0.450 6.450 10 C -0.106 4.106 11 C -0.178 4.178 12 C -0.095 4.095 13 C -0.248 4.248 14 C -0.107 4.107 15 C -0.286 4.286 16 C 0.082 3.918 17 C -0.564 4.564 18 H 0.076 0.924 19 C -0.200 4.200 20 N -0.481 5.481 21 Si 0.921 3.079 22 H -0.181 1.181 23 H -0.204 1.204 24 H -0.217 1.217 25 H 0.069 0.931 26 H 0.122 0.878 27 H 0.109 0.891 28 H 0.110 0.890 29 H 0.060 0.940 30 H 0.112 0.888 31 H 0.154 0.846 32 H 0.251 0.749 33 H 0.239 0.761 34 H 0.141 0.859 35 H 0.104 0.896 36 H 0.147 0.853 37 H 0.148 0.852 38 H 0.141 0.859 39 H 0.114 0.886 40 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -4.577 8.771 -15.783 18.628 hybrid contribution -1.384 0.453 -0.310 1.489 sum -5.961 9.225 -16.093 19.483 Atomic orbital electron populations 1.22089 0.76861 1.05413 1.02624 1.47994 1.08523 1.04750 1.74357 1.21009 0.97170 0.84935 0.96262 1.21907 1.03207 0.94240 0.99103 1.20789 0.78463 0.86511 0.83798 1.43683 1.60135 1.27760 1.08273 1.90755 1.56840 1.66694 1.33424 1.21193 0.87786 0.86193 0.74431 1.90660 1.16422 1.87799 1.50110 1.20333 0.96995 0.88960 1.04278 1.19564 1.05362 0.99934 0.92923 1.20899 0.96721 0.95466 0.96458 1.20900 1.04344 1.02193 0.97413 1.21006 0.98356 0.98749 0.92625 1.21301 1.07924 1.01538 0.97807 1.17793 0.90623 0.90253 0.93124 1.20473 1.02108 1.35953 0.97819 0.92380 1.27821 1.09411 0.91384 0.91345 1.70610 1.19832 1.35258 1.22354 0.83273 0.70752 0.77954 0.75894 1.18077 1.20421 1.21655 0.93075 0.87811 0.89109 0.88973 0.93973 0.88800 0.84631 0.74909 0.76114 0.85874 0.89647 0.85302 0.85218 0.85876 0.88644 0.91267 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.34 10.24 127.77 1.31 2.64 16 2 N -0.62 -18.30 2.87 -846.75 -2.43 -20.73 16 3 C 0.13 3.80 4.70 86.38 0.41 4.20 16 4 C -0.14 -2.95 6.02 29.85 0.18 -2.77 16 5 C 0.52 11.81 8.10 87.66 0.71 12.52 16 6 N -0.83 -10.56 8.87 -173.53 -1.54 -12.10 16 7 O -0.60 -19.96 16.82 -3.03 -0.05 -20.01 16 8 C 0.51 20.22 7.67 87.66 0.67 20.89 16 9 O -0.57 -28.65 15.61 -3.03 -0.05 -28.70 16 10 C -0.07 -2.44 3.91 29.10 0.11 -2.32 16 11 C -0.18 -7.95 4.43 -19.40 -0.09 -8.04 16 12 C -0.08 -3.06 9.66 22.22 0.21 -2.85 16 13 C -0.23 -8.98 10.05 22.46 0.23 -8.75 16 14 C -0.09 -3.84 10.02 22.22 0.22 -3.61 16 15 C -0.27 -13.41 7.26 22.73 0.16 -13.25 16 16 C 0.08 4.45 5.13 -21.29 -0.11 4.34 16 17 C -0.53 -30.30 8.80 23.46 0.21 -30.09 16 18 H 0.06 3.35 6.60 -2.91 -0.02 3.33 16 19 C 0.01 0.76 5.42 85.26 0.46 1.22 16 20 N -0.86 -50.18 13.65 21.82 0.30 -49.88 16 21 Si 1.10 55.84 24.89 68.60 1.71 57.55 16 22 H -0.26 -11.77 6.45 99.48 0.64 -11.13 16 23 H -0.28 -14.94 7.01 99.48 0.70 -14.25 16 24 H -0.29 -14.28 7.11 99.48 0.71 -13.58 16 25 H 0.05 1.02 8.14 -2.38 -0.02 1.00 16 26 H 0.10 1.17 8.07 -2.39 -0.02 1.15 16 27 H 0.09 1.39 6.44 -2.39 -0.02 1.38 16 28 H 0.09 2.41 8.03 -2.39 -0.02 2.39 16 29 H 0.04 1.66 7.38 -2.39 -0.02 1.64 16 30 H 0.09 2.11 8.14 -2.38 -0.02 2.09 16 31 H 0.14 1.60 8.14 -2.39 -0.02 1.59 16 32 H 0.42 2.33 8.83 -92.71 -0.82 1.51 16 33 H 0.41 4.48 8.93 -92.71 -0.83 3.66 16 34 H 0.12 3.27 7.31 -2.39 -0.02 3.25 16 35 H 0.09 3.27 6.48 -2.39 -0.02 3.26 16 36 H 0.13 4.05 8.06 -2.91 -0.02 4.03 16 37 H 0.13 4.09 8.06 -2.91 -0.02 4.07 16 38 H 0.12 4.45 8.06 -2.91 -0.02 4.42 16 39 H 0.10 4.85 4.43 -2.91 -0.01 4.84 16 40 H 0.28 15.85 8.73 -92.71 -0.81 15.05 16 Total: -1.00 -81.98 334.54 1.95 -80.03 By element: Atomic # 1 Polarization: 20.38 SS G_CDS: -0.67 Total: 19.70 kcal Atomic # 6 Polarization: -30.56 SS G_CDS: 4.69 Total: -25.86 kcal Atomic # 7 Polarization: -79.03 SS G_CDS: -3.67 Total: -82.70 kcal Atomic # 8 Polarization: -48.61 SS G_CDS: -0.10 Total: -48.71 kcal Atomic # 14 Polarization: 55.84 SS G_CDS: 1.71 Total: 57.55 kcal Total: -81.98 1.95 -80.03 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000804743176.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.543 kcal (2) G-P(sol) polarization free energy of solvation -81.977 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.520 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.952 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.025 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.568 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds