Wall clock time and date at job start Tue Mar 31 2020 02:49:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 109.47170 * 2 1 4 4 N 1.46500 * 109.46866 * 120.00530 * 2 1 3 5 5 C 1.34768 * 119.99743 * 274.99573 * 4 2 1 6 6 O 1.21589 * 120.00223 * 0.02562 * 5 4 2 7 7 C 1.47536 * 119.99758 * 180.02562 * 5 4 2 8 8 C 1.39705 * 120.19314 * 359.97438 * 7 5 4 9 9 C 1.37790 * 119.91360 * 179.97438 * 8 7 5 10 10 C 1.38555 * 120.29831 * 359.97438 * 9 8 7 11 11 C 1.38056 * 120.38556 * 0.02562 * 10 9 8 12 12 C 1.38713 * 120.09130 * 359.73929 * 11 10 9 13 13 O 1.35652 * 120.15495 * 180.28051 * 12 11 10 14 14 C 1.53000 * 109.46982 * 240.00251 * 2 1 3 15 15 C 1.53491 * 114.20581 * 175.13701 * 14 2 1 16 16 N 1.47068 * 87.98931 * 220.34690 * 15 14 2 17 17 C 1.36939 * 136.05910 * 207.08893 * 16 15 14 18 18 H 1.07998 * 120.00182 * 7.79505 * 17 16 15 19 19 C 1.38813 * 119.99786 * 187.79929 * 17 16 15 20 20 N 1.31621 * 119.99915 * 195.16074 * 19 17 16 21 21 Si 1.86797 * 120.00091 * 15.16174 * 19 17 16 22 22 H 1.48505 * 109.47500 * 270.00100 * 21 19 17 23 23 H 1.48507 * 109.47318 * 30.00091 * 21 19 17 24 24 H 1.48506 * 109.47272 * 149.99672 * 21 19 17 25 25 C 1.47064 * 87.88132 * 27.34445 * 16 15 14 26 26 H 1.09001 * 109.47388 * 184.83581 * 1 2 3 27 27 H 1.08999 * 109.47241 * 304.83623 * 1 2 3 28 28 H 1.09000 * 109.47347 * 64.83240 * 1 2 3 29 29 H 0.96994 * 119.99876 * 95.00252 * 4 2 1 30 30 H 1.08003 * 120.04757 * 359.97438 * 8 7 5 31 31 H 1.07992 * 119.85721 * 179.97438 * 9 8 7 32 32 H 1.07991 * 119.80776 * 179.97438 * 10 9 8 33 33 H 1.08006 * 119.95483 * 180.02562 * 11 10 9 34 34 H 0.96698 * 113.99536 * 270.22860 * 13 12 11 35 35 H 1.09004 * 113.41670 * 308.34718 * 14 2 1 36 36 H 1.09006 * 113.46406 * 105.56897 * 15 14 2 37 37 H 1.09000 * 113.52637 * 335.13768 * 15 14 2 38 38 H 0.96996 * 119.99969 * 354.93710 * 20 19 17 39 39 H 1.08997 * 113.47035 * 87.43951 * 25 16 15 40 40 H 1.09006 * 113.46815 * 217.87607 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6907 1.1961 5 6 2.1470 -0.0185 2.3570 6 8 1.8575 1.1612 2.4118 7 6 2.6393 -0.7139 3.5615 8 6 2.9726 -2.0694 3.5032 9 6 3.4323 -2.7131 4.6315 10 6 3.5663 -2.0220 5.8248 11 6 3.2405 -0.6823 5.8964 12 6 2.7809 -0.0172 4.7692 13 8 2.4658 1.3005 4.8366 14 6 2.0400 -0.7212 -1.2493 15 6 3.5649 -0.6826 -1.4198 16 7 3.3466 -0.4678 -2.8583 17 6 4.0405 -0.7260 -4.0102 18 1 4.9434 -1.3177 -3.9757 19 6 3.5835 -0.2273 -5.2224 20 7 4.0589 -0.7063 -6.3524 21 14 2.2937 1.1237 -5.2498 22 1 0.9394 0.5148 -5.2731 23 1 2.4357 1.9684 -4.0367 24 1 2.4805 1.9620 -6.4613 25 6 2.0581 0.1522 -2.5146 26 1 -0.3634 -1.0240 0.0866 27 1 -0.3634 0.5870 0.8435 28 1 -0.3634 0.4370 -0.9301 29 1 2.2490 -1.6318 1.1525 30 1 2.8701 -2.6121 2.5751 31 1 3.6893 -3.7610 4.5855 32 1 3.9270 -2.5344 6.7044 33 1 3.3481 -0.1502 6.8301 34 1 1.5445 1.4729 5.0747 35 1 1.5993 -1.7082 -1.3899 36 1 4.0513 -1.6310 -1.1915 37 1 4.0372 0.1639 -0.9213 38 1 4.7803 -1.3545 -6.3390 39 1 2.1321 1.2192 -2.3045 40 1 1.2607 -0.0848 -3.2190 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000969309344.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:49:44 Heat of formation + Delta-G solvation = 9.161174 kcal Electronic energy + Delta-G solvation = -22783.243817 eV Core-core repulsion = 19372.370682 eV Total energy + Delta-G solvation = -3410.873135 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.64415 -39.28584 -38.14829 -36.92106 -34.93978 -32.55234 -31.93451 -30.25906 -29.90667 -27.80501 -25.29024 -24.55440 -23.53961 -22.74935 -21.10938 -20.43312 -19.58224 -18.65735 -17.65974 -17.46898 -16.45712 -15.93637 -15.55760 -15.25469 -15.03200 -14.87213 -14.28524 -14.15527 -13.80853 -13.50304 -13.34495 -13.01413 -12.63620 -12.50323 -12.23657 -12.02155 -11.97904 -11.76216 -11.20224 -11.08868 -10.93265 -10.72304 -10.33825 -10.01770 -9.79853 -9.44670 -9.40005 -9.16785 -9.06257 -8.91669 -8.67590 -7.17210 -6.30048 -3.21990 0.52317 0.90793 2.75155 3.11642 3.42284 3.50893 3.51306 3.64587 3.94706 4.45515 4.47537 4.60436 4.63851 4.72802 4.93235 5.01318 5.03145 5.11641 5.38058 5.43571 5.45421 5.48989 5.56513 5.75742 5.84618 5.88510 5.94384 6.03656 6.08168 6.19328 6.26569 6.27475 6.35276 6.36981 6.41828 6.59975 6.93709 7.13916 7.47190 7.53967 8.24062 8.25054 8.97989 9.51479 10.38421 11.19909 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.028237 B = 0.003521 C = 0.003314 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 991.373645 B = 7949.264789 C = 8446.545972 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.153 3.847 3 H 0.090 0.910 4 N -0.716 5.716 5 C 0.556 3.444 6 O -0.525 6.525 7 C -0.163 4.163 8 C -0.070 4.070 9 C -0.139 4.139 10 C -0.081 4.081 11 C -0.159 4.159 12 C 0.167 3.833 13 O -0.477 6.477 14 C -0.141 4.141 15 C 0.125 3.875 16 N -0.624 5.624 17 C -0.305 4.305 18 H 0.081 0.919 19 C -0.024 4.024 20 N -0.932 5.932 21 Si 1.061 2.939 22 H -0.292 1.292 23 H -0.281 1.281 24 H -0.295 1.295 25 C 0.114 3.886 26 H 0.055 0.945 27 H 0.056 0.944 28 H 0.069 0.931 29 H 0.397 0.603 30 H 0.132 0.868 31 H 0.131 0.869 32 H 0.130 0.870 33 H 0.134 0.866 34 H 0.394 0.606 35 H 0.099 0.901 36 H 0.042 0.958 37 H 0.035 0.965 38 H 0.261 0.739 39 H 0.047 0.953 40 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.390 -3.930 26.043 27.102 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.048 3.952 3 H 0.108 0.892 4 N -0.367 5.367 5 C 0.343 3.657 6 O -0.402 6.402 7 C -0.166 4.166 8 C -0.089 4.089 9 C -0.157 4.157 10 C -0.099 4.099 11 C -0.177 4.177 12 C 0.120 3.880 13 O -0.288 6.288 14 C -0.161 4.161 15 C -0.001 4.001 16 N -0.352 5.352 17 C -0.432 4.432 18 H 0.099 0.901 19 C -0.223 4.223 20 N -0.574 5.574 21 Si 0.892 3.108 22 H -0.220 1.220 23 H -0.207 1.207 24 H -0.222 1.222 25 C -0.012 4.012 26 H 0.074 0.926 27 H 0.075 0.925 28 H 0.088 0.912 29 H 0.232 0.768 30 H 0.149 0.851 31 H 0.149 0.851 32 H 0.148 0.852 33 H 0.152 0.848 34 H 0.252 0.748 35 H 0.117 0.883 36 H 0.061 0.939 37 H 0.053 0.947 38 H 0.071 0.929 39 H 0.064 0.936 40 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -6.807 -2.111 24.645 25.655 hybrid contribution 0.809 -1.423 1.101 1.973 sum -5.998 -3.535 25.747 26.671 Atomic orbital electron populations 1.22129 0.95243 1.01906 1.02458 1.21016 0.93872 0.97483 0.82813 0.89186 1.46006 1.67140 1.14006 1.09578 1.18030 0.78173 0.86597 0.82926 1.90800 1.49583 1.14981 1.84787 1.20527 1.06489 0.94581 0.95036 1.21310 0.95814 0.92787 0.99012 1.21128 1.01208 1.00647 0.92675 1.21229 0.96785 0.93768 0.98123 1.21474 1.02997 0.94964 0.98303 1.18530 0.95133 0.83401 0.90939 1.84765 1.33198 1.18703 1.92125 1.23566 0.98470 1.00380 0.93696 1.22335 0.92616 0.98459 0.86707 1.46198 1.18435 1.69650 1.00918 1.20140 1.09617 1.30230 0.83184 0.90109 1.25789 1.03767 1.02083 0.90665 1.70905 1.27947 1.32516 1.26071 0.83794 0.75204 0.76704 0.75068 1.22006 1.20713 1.22224 1.22637 0.90301 0.95663 0.92603 0.92573 0.92486 0.91211 0.76778 0.85066 0.85098 0.85206 0.84811 0.74768 0.88326 0.93933 0.94736 0.92890 0.93555 0.92827 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.99 9.48 37.16 0.35 -1.64 16 2 C 0.15 2.18 2.34 -67.93 -0.16 2.02 16 3 H 0.09 1.49 7.42 -51.93 -0.39 1.11 16 4 N -0.72 -8.90 4.90 -54.85 -0.27 -9.17 16 5 C 0.56 7.71 7.73 -12.47 -0.10 7.61 16 6 O -0.52 -8.99 14.82 -16.59 -0.25 -9.23 16 7 C -0.16 -1.86 5.89 -104.84 -0.62 -2.47 16 8 C -0.07 -0.61 9.53 -39.20 -0.37 -0.99 16 9 C -0.14 -1.00 10.02 -39.63 -0.40 -1.39 16 10 C -0.08 -0.56 10.03 -39.53 -0.40 -0.96 16 11 C -0.16 -1.32 9.98 -39.47 -0.39 -1.72 16 12 C 0.17 1.83 6.72 -38.69 -0.26 1.57 16 13 O -0.48 -5.57 11.58 -40.53 -0.47 -6.04 16 14 C -0.14 -2.33 3.52 -89.97 -0.32 -2.64 16 15 C 0.13 2.47 8.13 -8.52 -0.07 2.40 16 16 N -0.62 -15.50 3.62 -184.61 -0.67 -16.17 16 17 C -0.31 -8.92 11.03 -15.06 -0.17 -9.09 16 18 H 0.08 2.48 8.06 -52.49 -0.42 2.06 16 19 C -0.02 -0.72 5.50 -17.43 -0.10 -0.82 16 20 N -0.93 -29.71 13.70 55.49 0.76 -28.95 16 21 Si 1.06 26.91 25.50 -169.99 -4.34 22.57 16 22 H -0.29 -7.03 6.97 56.52 0.39 -6.64 16 23 H -0.28 -6.67 5.66 56.52 0.32 -6.35 16 24 H -0.29 -7.57 7.11 56.52 0.40 -7.17 16 25 C 0.11 2.39 5.17 -8.38 -0.04 2.35 16 26 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 27 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 28 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 29 H 0.40 3.97 6.63 -40.82 -0.27 3.70 16 30 H 0.13 0.90 6.40 -52.48 -0.34 0.56 16 31 H 0.13 0.63 8.06 -52.49 -0.42 0.21 16 32 H 0.13 0.56 8.06 -52.49 -0.42 0.13 16 33 H 0.13 0.87 8.06 -52.48 -0.42 0.44 16 34 H 0.39 3.01 9.06 45.56 0.41 3.42 16 35 H 0.10 1.52 8.14 -51.93 -0.42 1.10 16 36 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 37 H 0.04 0.70 8.10 -51.93 -0.42 0.28 16 38 H 0.26 8.20 8.73 -40.82 -0.36 7.84 16 39 H 0.05 0.97 6.87 -51.93 -0.36 0.62 16 40 H 0.05 1.14 6.22 -51.93 -0.32 0.82 16 LS Contribution 331.33 15.07 4.99 4.99 Total: -1.00 -36.31 331.33 -7.99 -44.30 By element: Atomic # 1 Polarization: 8.19 SS G_CDS: -4.73 Total: 3.46 kcal Atomic # 6 Polarization: -2.73 SS G_CDS: -3.03 Total: -5.77 kcal Atomic # 7 Polarization: -54.11 SS G_CDS: -0.18 Total: -54.28 kcal Atomic # 8 Polarization: -14.56 SS G_CDS: -0.72 Total: -15.27 kcal Atomic # 14 Polarization: 26.91 SS G_CDS: -4.34 Total: 22.57 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -36.31 -7.99 -44.30 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000969309344.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.461 kcal (2) G-P(sol) polarization free energy of solvation -36.305 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.156 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.995 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.300 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.161 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds