Wall clock time and date at job start Tue Mar 31 2020 02:46:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09005 * 110.81093 * 2 1 4 4 C 1.54704 * 110.75169 * 123.32701 * 2 1 3 5 5 C 1.51681 * 101.87173 * 143.63452 * 4 2 1 6 6 C 1.37702 * 132.13394 * 164.29180 * 5 4 2 7 7 C 1.38594 * 120.32158 * 180.38377 * 6 5 4 8 8 C 1.37834 * 119.97230 * 0.02562 * 7 6 5 9 9 C 1.39488 * 120.18318 * 359.84356 * 8 7 6 10 10 C 1.47542 * 120.04732 * 179.97438 * 9 8 7 11 11 O 1.21588 * 119.99979 * 180.02562 * 10 9 8 12 12 N 1.34776 * 119.99989 * 0.02562 * 10 9 8 13 13 C 1.46504 * 120.00104 * 179.97438 * 12 10 9 14 14 C 1.53002 * 109.47281 * 179.97438 * 13 12 10 15 15 N 1.46496 * 109.47036 * 180.02562 * 14 13 12 16 16 C 1.36935 * 120.00236 * 180.02562 * 15 14 13 17 17 H 1.08004 * 119.99588 * 359.97438 * 16 15 14 18 18 C 1.38806 * 120.00279 * 180.02562 * 16 15 14 19 19 N 1.31619 * 120.00140 * 359.97438 * 18 16 15 20 20 Si 1.86808 * 119.99989 * 180.02562 * 18 16 15 21 21 H 1.48495 * 109.47271 * 89.99610 * 20 18 16 22 22 H 1.48503 * 109.47008 * 210.00062 * 20 18 16 23 23 H 1.48503 * 109.46714 * 329.99576 * 20 18 16 24 24 C 1.38833 * 106.98743 * 344.31682 * 5 4 2 25 25 O 1.35859 * 111.33629 * 359.39516 * 24 5 4 26 26 H 1.09002 * 109.47194 * 181.86589 * 1 2 3 27 27 H 1.09001 * 109.46957 * 301.86345 * 1 2 3 28 28 H 1.09004 * 109.47283 * 61.86319 * 1 2 3 29 29 H 1.08998 * 110.95340 * 261.77574 * 4 2 1 30 30 H 1.09001 * 110.95379 * 25.49477 * 4 2 1 31 31 H 1.07999 * 119.83499 * 0.41007 * 6 5 4 32 32 H 1.07999 * 120.01862 * 179.97438 * 7 6 5 33 33 H 1.07999 * 119.90941 * 179.82464 * 8 7 6 34 34 H 0.97004 * 119.99961 * 359.97438 * 12 10 9 35 35 H 1.08997 * 109.46951 * 300.00070 * 13 12 10 36 36 H 1.09008 * 109.46492 * 60.00058 * 13 12 10 37 37 H 1.08998 * 109.46788 * 300.00129 * 14 13 12 38 38 H 1.08996 * 109.47067 * 60.00176 * 14 13 12 39 39 H 0.97004 * 120.00180 * 0.02562 * 15 14 13 40 40 H 0.96999 * 119.99769 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9172 1.0189 0.0000 4 6 2.0781 -0.7948 1.2088 5 6 3.3064 -1.4579 0.6152 6 6 4.3964 -2.0695 1.1932 7 6 5.4038 -2.5977 0.4014 8 6 5.3173 -2.5114 -0.9715 9 6 4.2164 -1.8964 -1.5676 10 6 4.1272 -1.8052 -3.0375 11 8 3.1673 -1.2685 -3.5562 12 7 5.1096 -2.3168 -3.8053 13 6 5.0208 -2.2268 -5.2649 14 6 6.2549 -2.8784 -5.8921 15 7 6.1663 -2.7877 -7.3516 16 6 7.1645 -3.3074 -8.1318 17 1 8.0173 -3.7838 -7.6710 18 6 7.0808 -3.2211 -9.5146 19 7 6.0417 -2.6402 -10.0761 20 14 8.4422 -3.9307 -10.5788 21 1 8.1340 -5.3481 -10.8970 22 1 8.5429 -3.1511 -11.8387 23 1 9.7321 -3.8569 -9.8467 24 6 3.1907 -1.3644 -0.7652 25 8 2.0393 -0.7385 -1.1234 26 1 -0.3634 -1.0271 0.0335 27 1 -0.3633 0.5425 0.8728 28 1 -0.3634 0.4846 -0.9062 29 1 2.3524 -0.1250 2.0237 30 1 1.3570 -1.5401 1.5446 31 1 4.4662 -2.1383 2.2687 32 1 6.2567 -3.0760 0.8599 33 1 6.1043 -2.9209 -1.5875 34 1 5.8756 -2.7447 -3.3915 35 1 4.1236 -2.7428 -5.6067 36 1 4.9729 -1.1791 -5.5619 37 1 7.1517 -2.3619 -5.5501 38 1 6.3032 -3.9259 -5.5951 39 1 5.4005 -2.3596 -7.7654 40 1 5.9831 -2.5802 -11.0424 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001131464964.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:46:59 Heat of formation + Delta-G solvation = -29.533583 kcal Electronic energy + Delta-G solvation = -22031.880706 eV Core-core repulsion = 18619.329641 eV Total energy + Delta-G solvation = -3412.551065 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.53333 -39.37840 -37.55149 -35.61857 -33.82362 -33.43274 -31.71603 -31.04611 -30.45356 -27.65383 -26.91220 -24.27098 -23.00109 -22.33305 -21.97977 -21.39008 -20.16085 -17.94575 -17.57321 -17.06572 -16.89030 -15.93503 -15.33217 -15.24170 -15.13390 -14.53850 -14.23005 -13.91914 -13.70181 -13.50642 -13.37201 -13.17748 -13.09854 -12.79046 -12.64284 -12.38413 -12.07492 -11.77849 -11.39697 -11.34407 -11.07803 -11.04488 -10.80090 -10.77724 -10.10393 -9.83471 -9.63859 -9.23714 -8.94431 -8.75675 -8.40119 -6.97031 -5.77325 -3.08025 0.63917 1.03059 2.82010 2.96522 3.28620 3.43905 3.48785 3.50756 3.67157 4.02342 4.13879 4.45587 4.58610 4.60343 4.70931 4.80871 4.83713 4.96024 5.09667 5.15803 5.26751 5.41340 5.44618 5.52786 5.58091 5.68318 5.75402 5.82946 5.88237 5.98485 6.00624 6.07969 6.20110 6.29767 6.53863 6.74334 6.79536 6.92379 7.67525 7.69016 8.39559 8.42171 9.51481 10.06659 10.41494 11.45333 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.031582 B = 0.002684 C = 0.002485 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 886.357056 B =10429.377254 C =11265.458732 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.069 3.931 3 H 0.089 0.911 4 C -0.104 4.104 5 C -0.191 4.191 6 C -0.047 4.047 7 C -0.158 4.158 8 C -0.052 4.052 9 C -0.154 4.154 10 C 0.553 3.447 11 O -0.525 6.525 12 N -0.721 5.721 13 C 0.112 3.888 14 C 0.145 3.855 15 N -0.730 5.730 16 C -0.243 4.243 17 H 0.072 0.928 18 C -0.013 4.013 19 N -0.931 5.931 20 Si 0.910 3.090 21 H -0.289 1.289 22 H -0.291 1.291 23 H -0.281 1.281 24 C 0.171 3.829 25 O -0.272 6.272 26 H 0.067 0.933 27 H 0.078 0.922 28 H 0.072 0.928 29 H 0.092 0.908 30 H 0.093 0.907 31 H 0.128 0.872 32 H 0.135 0.865 33 H 0.137 0.863 34 H 0.397 0.603 35 H 0.070 0.930 36 H 0.070 0.930 37 H 0.024 0.976 38 H 0.024 0.976 39 H 0.386 0.614 40 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.188 3.071 28.912 29.726 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.013 3.987 3 H 0.107 0.893 4 C -0.141 4.141 5 C -0.192 4.192 6 C -0.065 4.065 7 C -0.176 4.176 8 C -0.071 4.071 9 C -0.158 4.158 10 C 0.339 3.661 11 O -0.402 6.402 12 N -0.373 5.373 13 C -0.011 4.011 14 C 0.017 3.983 15 N -0.375 5.375 16 C -0.374 4.374 17 H 0.090 0.910 18 C -0.209 4.209 19 N -0.579 5.579 20 Si 0.741 3.259 21 H -0.216 1.216 22 H -0.217 1.217 23 H -0.207 1.207 24 C 0.123 3.877 25 O -0.184 6.184 26 H 0.086 0.914 27 H 0.097 0.903 28 H 0.091 0.909 29 H 0.111 0.889 30 H 0.111 0.889 31 H 0.146 0.854 32 H 0.153 0.847 33 H 0.155 0.845 34 H 0.232 0.768 35 H 0.088 0.912 36 H 0.088 0.912 37 H 0.042 0.958 38 H 0.042 0.958 39 H 0.220 0.780 40 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -6.877 3.409 28.218 29.243 hybrid contribution 0.940 -0.470 -0.437 1.138 sum -5.938 2.939 27.781 28.560 Atomic orbital electron populations 1.21873 0.91836 1.03541 1.03366 1.23504 0.96197 0.95683 0.83278 0.89321 1.21897 0.94428 0.99285 0.98487 1.20810 0.98484 1.06444 0.93419 1.20458 0.91558 0.94417 1.00104 1.20958 1.00112 1.03322 0.93181 1.21142 0.95457 0.95092 0.95404 1.19342 0.95089 1.08257 0.93091 1.18031 0.82906 0.79038 0.86088 1.90835 1.31771 1.43099 1.74480 1.45831 1.23664 1.60142 1.07684 1.21582 1.00125 1.01909 0.77527 1.20756 0.93781 0.97105 0.86697 1.42195 1.25841 1.70791 0.98646 1.19192 0.99498 1.30518 0.88228 0.91030 1.24784 0.98156 1.01308 0.96644 1.69671 1.29772 1.48555 1.09892 0.86146 0.81217 0.78435 0.80099 1.21633 1.21698 1.20713 1.19448 0.85715 0.90759 0.91797 1.87050 1.33604 1.60915 1.36869 0.91396 0.90309 0.90900 0.88937 0.88918 0.85404 0.84747 0.84543 0.76834 0.91194 0.91206 0.95787 0.95779 0.77974 0.93364 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.05 9.60 37.16 0.36 -0.70 16 2 C 0.07 0.64 4.26 -25.84 -0.11 0.53 16 3 H 0.09 0.73 8.14 -51.93 -0.42 0.30 16 4 C -0.10 -0.76 6.65 -26.50 -0.18 -0.94 16 5 C -0.19 -1.90 6.27 -104.11 -0.65 -2.55 16 6 C -0.05 -0.38 10.02 -39.65 -0.40 -0.78 16 7 C -0.16 -1.26 10.05 -39.60 -0.40 -1.66 16 8 C -0.05 -0.52 9.51 -39.26 -0.37 -0.89 16 9 C -0.15 -2.09 5.89 -104.72 -0.62 -2.71 16 10 C 0.55 9.27 7.76 -12.47 -0.10 9.18 16 11 O -0.53 -11.00 15.87 -10.30 -0.16 -11.16 16 12 N -0.72 -10.90 5.50 -61.34 -0.34 -11.23 16 13 C 0.11 2.05 5.79 -4.04 -0.02 2.02 16 14 C 0.14 2.92 6.37 -4.04 -0.03 2.89 16 15 N -0.73 -18.95 5.60 -59.91 -0.34 -19.29 16 16 C -0.24 -6.89 9.99 -15.06 -0.15 -7.04 16 17 H 0.07 1.94 7.83 -52.48 -0.41 1.53 16 18 C -0.01 -0.37 5.50 -17.43 -0.10 -0.46 16 19 N -0.93 -28.66 13.06 55.49 0.72 -27.94 16 20 Si 0.91 22.52 29.55 -169.99 -5.02 17.49 16 21 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 22 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 23 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 24 C 0.17 2.30 6.73 -38.44 -0.26 2.04 16 25 O -0.27 -3.91 9.83 -34.88 -0.34 -4.25 16 26 H 0.07 0.49 8.11 -51.93 -0.42 0.07 16 27 H 0.08 0.35 8.14 -51.93 -0.42 -0.08 16 28 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 29 H 0.09 0.47 8.14 -51.93 -0.42 0.04 16 30 H 0.09 0.58 7.90 -51.93 -0.41 0.17 16 31 H 0.13 0.66 8.06 -52.49 -0.42 0.24 16 32 H 0.13 0.71 8.06 -52.49 -0.42 0.28 16 33 H 0.14 1.03 6.37 -52.49 -0.33 0.70 16 34 H 0.40 4.67 6.48 -40.82 -0.26 4.40 16 35 H 0.07 1.37 8.14 -51.93 -0.42 0.95 16 36 H 0.07 1.36 8.14 -51.92 -0.42 0.94 16 37 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 38 H 0.02 0.48 8.14 -51.93 -0.42 0.05 16 39 H 0.39 10.64 7.67 -40.82 -0.31 10.32 16 40 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 LS Contribution 339.06 15.07 5.11 5.11 Total: -1.00 -35.91 339.06 -8.91 -44.82 By element: Atomic # 1 Polarization: 13.04 SS G_CDS: -5.52 Total: 7.53 kcal Atomic # 6 Polarization: 1.95 SS G_CDS: -3.02 Total: -1.07 kcal Atomic # 7 Polarization: -58.51 SS G_CDS: 0.05 Total: -58.46 kcal Atomic # 8 Polarization: -14.91 SS G_CDS: -0.51 Total: -15.42 kcal Atomic # 14 Polarization: 22.52 SS G_CDS: -5.02 Total: 17.49 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -35.91 -8.91 -44.82 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001131464964.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.283 kcal (2) G-P(sol) polarization free energy of solvation -35.911 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.628 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.905 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.817 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.534 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds