Wall clock time and date at job start Tue Mar 31 2020 02:46:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09005 * 110.81093 * 2 1 4 4 C 1.54704 * 110.75169 * 123.32701 * 2 1 3 5 5 C 1.51681 * 101.87173 * 143.63452 * 4 2 1 6 6 C 1.37702 * 132.13394 * 164.29180 * 5 4 2 7 7 C 1.38594 * 120.32158 * 180.38377 * 6 5 4 8 8 C 1.37834 * 119.97230 * 0.02562 * 7 6 5 9 9 C 1.39488 * 120.18318 * 359.84356 * 8 7 6 10 10 C 1.47542 * 120.04732 * 179.97438 * 9 8 7 11 11 O 1.21588 * 119.99979 * 180.02562 * 10 9 8 12 12 N 1.34776 * 119.99989 * 0.02562 * 10 9 8 13 13 C 1.46504 * 120.00104 * 179.97438 * 12 10 9 14 14 C 1.53002 * 109.47281 * 179.97438 * 13 12 10 15 15 N 1.46496 * 109.47036 * 180.02562 * 14 13 12 16 16 C 1.36935 * 120.00236 * 180.02562 * 15 14 13 17 17 H 1.08004 * 119.99588 * 359.97438 * 16 15 14 18 18 C 1.38806 * 120.00279 * 180.02562 * 16 15 14 19 19 N 1.31619 * 120.00140 * 359.97438 * 18 16 15 20 20 Si 1.86808 * 119.99989 * 180.02562 * 18 16 15 21 21 H 1.48495 * 109.47271 * 89.99610 * 20 18 16 22 22 H 1.48503 * 109.47008 * 210.00062 * 20 18 16 23 23 H 1.48503 * 109.46714 * 329.99576 * 20 18 16 24 24 C 1.38833 * 106.98743 * 344.31682 * 5 4 2 25 25 O 1.35859 * 111.33629 * 359.39516 * 24 5 4 26 26 H 1.09002 * 109.47194 * 181.86589 * 1 2 3 27 27 H 1.09001 * 109.46957 * 301.86345 * 1 2 3 28 28 H 1.09004 * 109.47283 * 61.86319 * 1 2 3 29 29 H 1.08998 * 110.95340 * 261.77574 * 4 2 1 30 30 H 1.09001 * 110.95379 * 25.49477 * 4 2 1 31 31 H 1.07999 * 119.83499 * 0.41007 * 6 5 4 32 32 H 1.07999 * 120.01862 * 179.97438 * 7 6 5 33 33 H 1.07999 * 119.90941 * 179.82464 * 8 7 6 34 34 H 0.97004 * 119.99961 * 359.97438 * 12 10 9 35 35 H 1.08997 * 109.46951 * 300.00070 * 13 12 10 36 36 H 1.09008 * 109.46492 * 60.00058 * 13 12 10 37 37 H 1.08998 * 109.46788 * 300.00129 * 14 13 12 38 38 H 1.08996 * 109.47067 * 60.00176 * 14 13 12 39 39 H 0.97004 * 120.00180 * 0.02562 * 15 14 13 40 40 H 0.96999 * 119.99769 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9172 1.0189 0.0000 4 6 2.0781 -0.7948 1.2088 5 6 3.3064 -1.4579 0.6152 6 6 4.3964 -2.0695 1.1932 7 6 5.4038 -2.5977 0.4014 8 6 5.3173 -2.5114 -0.9715 9 6 4.2164 -1.8964 -1.5676 10 6 4.1272 -1.8052 -3.0375 11 8 3.1673 -1.2685 -3.5562 12 7 5.1096 -2.3168 -3.8053 13 6 5.0208 -2.2268 -5.2649 14 6 6.2549 -2.8784 -5.8921 15 7 6.1663 -2.7877 -7.3516 16 6 7.1645 -3.3074 -8.1318 17 1 8.0173 -3.7838 -7.6710 18 6 7.0808 -3.2211 -9.5146 19 7 6.0417 -2.6402 -10.0761 20 14 8.4422 -3.9307 -10.5788 21 1 8.1340 -5.3481 -10.8970 22 1 8.5429 -3.1511 -11.8387 23 1 9.7321 -3.8569 -9.8467 24 6 3.1907 -1.3644 -0.7652 25 8 2.0393 -0.7385 -1.1234 26 1 -0.3634 -1.0271 0.0335 27 1 -0.3633 0.5425 0.8728 28 1 -0.3634 0.4846 -0.9062 29 1 2.3524 -0.1250 2.0237 30 1 1.3570 -1.5401 1.5446 31 1 4.4662 -2.1383 2.2687 32 1 6.2567 -3.0760 0.8599 33 1 6.1043 -2.9209 -1.5875 34 1 5.8756 -2.7447 -3.3915 35 1 4.1236 -2.7428 -5.6067 36 1 4.9729 -1.1791 -5.5619 37 1 7.1517 -2.3619 -5.5501 38 1 6.3032 -3.9259 -5.5951 39 1 5.4005 -2.3596 -7.7654 40 1 5.9831 -2.5802 -11.0424 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001131464964.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:46:59 Heat of formation + Delta-G solvation = -54.746114 kcal Electronic energy + Delta-G solvation = -22032.974003 eV Core-core repulsion = 18619.329641 eV Total energy + Delta-G solvation = -3413.644363 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.33332 -40.62949 -38.37356 -37.33375 -35.54759 -34.19740 -33.25785 -32.13078 -31.37631 -29.32602 -27.54394 -25.92134 -24.39332 -23.15248 -23.03516 -22.58126 -21.33681 -19.40824 -18.66631 -18.40438 -17.77928 -16.97000 -16.73924 -16.54325 -16.28531 -15.90562 -15.43966 -15.25972 -15.09318 -14.76627 -14.69450 -14.16463 -14.04091 -13.72097 -13.37452 -13.12748 -13.05512 -12.99653 -12.78755 -12.67881 -12.57006 -12.40919 -12.09183 -11.99332 -11.86966 -11.73289 -11.02204 -11.00166 -10.29662 -9.90836 -9.18751 -9.08370 -7.97392 -5.29487 -0.19550 0.29282 1.47982 1.51023 1.59392 1.80160 2.00949 2.22324 2.57394 2.76279 3.36776 3.39215 3.48383 3.66586 3.90341 3.95988 4.00928 4.12737 4.17753 4.18030 4.20744 4.29075 4.45183 4.55053 4.66255 4.72059 4.78244 4.91165 4.97821 5.04106 5.10072 5.16125 5.18476 5.31467 5.31769 5.39009 5.47887 5.67710 6.15128 6.22934 6.48284 7.16221 7.28948 8.00074 8.23703 9.26542 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.031582 B = 0.002684 C = 0.002485 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 886.357056 B =10429.377254 C =11265.458732 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.055 3.945 3 H 0.091 0.909 4 C -0.093 4.093 5 C -0.194 4.194 6 C -0.036 4.036 7 C -0.148 4.148 8 C -0.053 4.053 9 C -0.187 4.187 10 C 0.549 3.451 11 O -0.581 6.581 12 N -0.706 5.706 13 C 0.128 3.872 14 C 0.151 3.849 15 N -0.748 5.748 16 C -0.248 4.248 17 H 0.085 0.915 18 C -0.079 4.079 19 N -0.973 5.973 20 Si 0.982 3.018 21 H -0.285 1.285 22 H -0.297 1.297 23 H -0.264 1.264 24 C 0.135 3.865 25 O -0.317 6.317 26 H 0.062 0.938 27 H 0.111 0.889 28 H 0.055 0.945 29 H 0.123 0.877 30 H 0.105 0.895 31 H 0.167 0.833 32 H 0.172 0.828 33 H 0.157 0.843 34 H 0.415 0.585 35 H 0.051 0.949 36 H 0.051 0.949 37 H 0.040 0.960 38 H 0.040 0.960 39 H 0.373 0.627 40 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.182 1.980 32.475 32.803 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.000 4.000 3 H 0.109 0.891 4 C -0.130 4.130 5 C -0.194 4.194 6 C -0.054 4.054 7 C -0.166 4.166 8 C -0.071 4.071 9 C -0.191 4.191 10 C 0.338 3.662 11 O -0.461 6.461 12 N -0.360 5.360 13 C 0.004 3.996 14 C 0.024 3.976 15 N -0.391 5.391 16 C -0.380 4.380 17 H 0.103 0.897 18 C -0.271 4.271 19 N -0.623 5.623 20 Si 0.810 3.190 21 H -0.212 1.212 22 H -0.223 1.223 23 H -0.189 1.189 24 C 0.087 3.913 25 O -0.230 6.230 26 H 0.082 0.918 27 H 0.129 0.871 28 H 0.075 0.925 29 H 0.141 0.859 30 H 0.123 0.877 31 H 0.185 0.815 32 H 0.190 0.810 33 H 0.174 0.826 34 H 0.254 0.746 35 H 0.069 0.931 36 H 0.070 0.930 37 H 0.058 0.942 38 H 0.058 0.942 39 H 0.205 0.795 40 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -4.818 2.289 31.857 32.301 hybrid contribution 0.306 -0.121 -1.388 1.427 sum -4.511 2.167 30.469 30.877 Atomic orbital electron populations 1.21899 0.90685 1.03557 1.04044 1.23846 0.97225 0.95768 0.83173 0.89133 1.21939 0.93437 0.99589 0.98035 1.21205 0.99887 1.06436 0.91918 1.20988 0.90146 0.92138 1.02138 1.21441 1.00969 1.01997 0.92157 1.21424 0.94507 0.94337 0.96877 1.19329 0.97497 1.11492 0.90768 1.18692 0.81966 0.77733 0.87806 1.90794 1.33923 1.45648 1.75783 1.45589 1.24249 1.60000 1.06119 1.21166 0.98676 1.00313 0.79468 1.20836 0.94804 0.98155 0.83791 1.42445 1.25065 1.70662 1.00975 1.19672 0.99968 1.29501 0.88813 0.89694 1.25718 1.00754 1.02413 0.98215 1.69851 1.32073 1.50595 1.09776 0.85023 0.78836 0.77330 0.77825 1.21223 1.22320 1.18862 1.19892 0.85816 0.91885 0.93670 1.86997 1.34495 1.61817 1.39735 0.91841 0.87063 0.92540 0.85917 0.87684 0.81509 0.81014 0.82563 0.74620 0.93058 0.93018 0.94162 0.94175 0.79536 0.93890 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.04 9.60 71.98 0.69 -1.35 16 2 C 0.05 1.01 4.26 31.17 0.13 1.14 16 3 H 0.09 1.52 8.14 -2.38 -0.02 1.50 16 4 C -0.09 -1.15 6.65 30.74 0.20 -0.95 16 5 C -0.19 -3.45 6.27 -19.54 -0.12 -3.57 16 6 C -0.04 -0.43 10.02 22.23 0.22 -0.21 16 7 C -0.15 -1.75 10.05 22.26 0.22 -1.53 16 8 C -0.05 -0.93 9.51 22.48 0.21 -0.72 16 9 C -0.19 -5.13 5.89 -19.93 -0.12 -5.24 16 10 C 0.55 19.29 7.76 86.70 0.67 19.96 16 11 O -0.58 -26.26 15.87 10.91 0.17 -26.09 16 12 N -0.71 -21.62 5.50 -466.25 -2.57 -24.18 16 13 C 0.13 4.86 5.79 86.38 0.50 5.36 16 14 C 0.15 6.01 6.37 86.38 0.55 6.56 16 15 N -0.75 -39.32 5.60 -343.47 -1.92 -41.25 16 16 C -0.25 -13.97 9.99 84.03 0.84 -13.13 16 17 H 0.09 4.46 7.83 -2.91 -0.02 4.43 16 18 C -0.08 -4.60 5.50 84.86 0.47 -4.14 16 19 N -0.97 -61.26 13.06 21.65 0.28 -60.97 16 20 Si 0.98 46.31 29.55 68.60 2.03 48.34 16 21 H -0.29 -13.18 7.11 99.48 0.71 -12.47 16 22 H -0.30 -14.14 7.11 99.48 0.71 -13.44 16 23 H -0.26 -11.57 7.11 99.48 0.71 -10.87 16 24 C 0.14 3.69 6.73 23.01 0.15 3.84 16 25 O -0.32 -9.69 9.83 -77.06 -0.76 -10.45 16 26 H 0.06 0.93 8.11 -2.39 -0.02 0.91 16 27 H 0.11 0.78 8.14 -2.39 -0.02 0.76 16 28 H 0.06 0.96 8.14 -2.38 -0.02 0.94 16 29 H 0.12 0.76 8.14 -2.39 -0.02 0.74 16 30 H 0.10 1.04 7.90 -2.39 -0.02 1.02 16 31 H 0.17 0.71 8.06 -2.91 -0.02 0.68 16 32 H 0.17 0.78 8.06 -2.91 -0.02 0.76 16 33 H 0.16 1.92 6.37 -2.91 -0.02 1.91 16 34 H 0.42 9.29 6.48 -92.70 -0.60 8.69 16 35 H 0.05 2.13 8.14 -2.39 -0.02 2.11 16 36 H 0.05 2.14 8.14 -2.38 -0.02 2.12 16 37 H 0.04 1.51 8.14 -2.39 -0.02 1.49 16 38 H 0.04 1.51 8.14 -2.39 -0.02 1.49 16 39 H 0.37 21.29 7.67 -92.70 -0.71 20.58 16 40 H 0.25 15.34 8.31 -92.71 -0.77 14.57 16 Total: -1.00 -82.27 339.06 1.62 -80.65 By element: Atomic # 1 Polarization: 28.16 SS G_CDS: -0.24 Total: 27.92 kcal Atomic # 6 Polarization: 1.41 SS G_CDS: 4.63 Total: 6.04 kcal Atomic # 7 Polarization: -122.19 SS G_CDS: -4.21 Total: -126.40 kcal Atomic # 8 Polarization: -35.96 SS G_CDS: -0.58 Total: -36.54 kcal Atomic # 14 Polarization: 46.31 SS G_CDS: 2.03 Total: 48.34 kcal Total: -82.27 1.62 -80.65 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001131464964.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.900 kcal (2) G-P(sol) polarization free energy of solvation -82.271 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.371 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.625 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.646 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.746 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds