Wall clock time and date at job start Tue Mar 31 2020 02:47:04
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52993 * 1
3 3 H 1.09007 * 110.66420 * 2 1
4 4 C 1.54703 * 110.90385 * 123.31570 * 2 1 3
5 5 C 1.51672 * 101.92126 * 143.69224 * 4 2 1
6 6 C 1.37309 * 132.06536 * 164.36805 * 5 4 2
7 7 C 1.39809 * 119.86167 * 180.95398 * 6 5 4
8 8 C 1.47600 * 120.26656 * 180.02562 * 7 6 5
9 9 O 1.21579 * 120.00194 * 359.95164 * 8 7 6
10 10 N 1.34781 * 119.99932 * 179.97438 * 8 7 6
11 11 C 1.46501 * 119.99881 * 179.97438 * 10 8 7
12 12 C 1.53001 * 109.46714 * 180.02562 * 11 10 8
13 13 N 1.46501 * 109.46714 * 180.02562 * 12 11 10
14 14 C 1.36934 * 120.00050 * 180.02562 * 13 12 11
15 15 H 1.08004 * 120.00079 * 359.97438 * 14 13 12
16 16 C 1.38817 * 120.00420 * 180.02562 * 14 13 12
17 17 N 1.31622 * 119.99317 * 359.97438 * 16 14 13
18 18 Si 1.86795 * 120.00334 * 180.02562 * 16 14 13
19 19 H 1.48508 * 109.47107 * 359.97438 * 18 16 14
20 20 H 1.48495 * 109.47581 * 119.99356 * 18 16 14
21 21 H 1.48496 * 109.47070 * 239.99813 * 18 16 14
22 22 C 1.39751 * 119.46857 * 359.95132 * 7 6 5
23 23 C 1.37480 * 120.19850 * 359.85566 * 22 7 6
24 24 C 1.39185 * 107.00450 * 344.85423 * 5 4 2
25 25 O 1.36004 * 111.15554 * 358.52425 * 24 5 4
26 26 H 1.08997 * 109.47438 * 181.75512 * 1 2 3
27 27 H 1.09000 * 109.47389 * 301.75612 * 1 2 3
28 28 H 1.09002 * 109.47152 * 61.75377 * 1 2 3
29 29 H 1.09003 * 110.93659 * 25.53641 * 4 2 1
30 30 H 1.08998 * 110.93803 * 261.85496 * 4 2 1
31 31 H 1.08001 * 120.06867 * 0.90810 * 6 5 4
32 32 H 0.97001 * 119.99636 * 0.02562 * 10 8 7
33 33 H 1.08998 * 109.47264 * 300.00180 * 11 10 8
34 34 H 1.08998 * 109.46719 * 60.00253 * 11 10 8
35 35 H 1.08992 * 109.47145 * 299.99717 * 12 11 10
36 36 H 1.08999 * 109.46892 * 60.00312 * 12 11 10
37 37 H 0.97001 * 120.00483 * 0.02562 * 13 12 11
38 38 H 0.97003 * 119.99583 * 180.02562 * 17 16 14
39 39 H 1.07994 * 119.90211 * 179.83100 * 22 7 6
40 40 H 1.08002 * 119.78264 * 179.97438 * 23 22 7
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5299 0.0000 0.0000
3 1 1.9146 1.0199 0.0000
4 6 2.0819 -0.7938 1.2077
5 6 3.3109 -1.4545 0.6131
6 6 4.3983 -2.0629 1.1900
7 6 5.4160 -2.5802 0.3830
8 6 6.5886 -3.2365 0.9936
9 8 6.6727 -3.3281 2.2030
10 7 7.5663 -3.7338 0.2105
11 6 8.7305 -4.3847 0.8166
12 6 9.6825 -4.8552 -0.2848
13 7 10.8464 -5.5067 0.3213
14 6 11.8402 -6.0111 -0.4743
15 1 11.7659 -5.9290 -1.5487
16 6 12.9428 -6.6288 0.0999
17 7 13.0331 -6.7292 1.4092
18 14 14.2988 -7.3163 -0.9853
19 1 13.9607 -7.0770 -2.4115
20 1 15.5819 -6.6428 -0.6608
21 1 14.4317 -8.7759 -0.7467
22 6 5.3134 -2.4723 -1.0066
23 6 4.2185 -1.8648 -1.5741
24 6 3.1996 -1.3507 -0.7704
25 8 2.0392 -0.7363 -1.1248
26 1 -0.3634 -1.0271 0.0315
27 1 -0.3634 0.5409 0.8738
28 1 -0.3633 0.4864 -0.9053
29 1 1.3627 -1.5404 1.5446
30 1 2.3556 -0.1233 2.0223
31 1 4.4676 -2.1410 2.2649
32 1 7.4995 -3.6600 -0.7544
33 1 9.2466 -3.6761 1.4643
34 1 8.4023 -5.2419 1.4044
35 1 9.1666 -5.5636 -0.9328
36 1 10.0106 -3.9977 -0.8722
37 1 10.9130 -5.5807 1.2862
38 1 13.8037 -7.1606 1.8105
39 1 6.0968 -2.8671 -1.6365
40 1 4.1463 -1.7847 -2.6487
RHF calculation, no. of doubly occupied orbitals= 54
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001135331323.mol2 40
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 02:47:04
Heat of formation + Delta-G solvation = -56.939877 kcal
Electronic energy + Delta-G solvation = -21562.732411 eV
Core-core repulsion = 18148.992919 eV
Total energy + Delta-G solvation = -3413.739491 eV
No. of doubly occupied orbitals = 54
Molecular weight
(most abundant/longest-lived isotopes) = 290.142 amu
Computer time = 0.66 seconds
Orbital eigenvalues (eV)
-42.29088 -40.88101 -38.25220 -37.30375 -35.57828 -34.21914 -33.28040 -32.16424
-31.42453 -29.44370 -27.54697 -25.83202 -24.44044 -23.14348 -22.90774 -22.70009
-21.42055 -19.38960 -18.73111 -18.58924 -17.71770 -17.08462 -16.70819 -16.54202
-16.36092 -15.61565 -15.30791 -15.21650 -15.15821 -14.80882 -14.70675 -14.23975
-14.16533 -13.92408 -13.41741 -13.38007 -13.11998 -13.04184 -12.94314 -12.69457
-12.50813 -12.23604 -12.04147 -11.87438 -11.84907 -11.70476 -11.16393 -11.00476
-10.23923 -10.03793 -9.26097 -9.06368 -7.96707 -5.28065 -0.26163 0.22936
1.49027 1.50461 1.60566 1.70506 1.99623 2.16090 2.57921 2.71824
3.35763 3.37735 3.49828 3.65559 3.78513 3.96418 3.99903 4.09578
4.15602 4.16906 4.21784 4.22637 4.49204 4.57593 4.64669 4.72699
4.83379 4.88778 4.98429 5.06000 5.08515 5.13191 5.21727 5.22948
5.25344 5.32128 5.45199 5.49773 6.06632 6.24185 6.47580 7.13509
7.30383 8.02182 8.25065 9.27182
Molecular weight = 290.14amu
Principal moments of inertia in cm(-1)
A = 0.052148 B = 0.002255 C = 0.002170
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 536.805118 B =12411.822437 C =12898.396969
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.146 4.146
2 C 0.070 3.930
3 H 0.100 0.900
4 C -0.104 4.104
5 C -0.193 4.193
6 C -0.022 4.022
7 C -0.178 4.178
8 C 0.559 3.441
9 O -0.586 6.586
10 N -0.705 5.705
11 C 0.127 3.873
12 C 0.148 3.852
13 N -0.747 5.747
14 C -0.246 4.246
15 H 0.085 0.915
16 C -0.079 4.079
17 N -0.971 5.971
18 Si 0.980 3.020
19 H -0.261 1.261
20 H -0.294 1.294
21 H -0.294 1.294
22 C -0.040 4.040
23 C -0.147 4.147
24 C 0.124 3.876
25 O -0.312 6.312
26 H 0.063 0.937
27 H 0.102 0.898
28 H 0.072 0.928
29 H 0.102 0.898
30 H 0.109 0.891
31 H 0.129 0.871
32 H 0.416 0.584
33 H 0.055 0.945
34 H 0.055 0.945
35 H 0.040 0.960
36 H 0.040 0.960
37 H 0.374 0.626
38 H 0.252 0.748
39 H 0.163 0.837
40 H 0.159 0.841
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -27.592 15.837 -6.550 32.481
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.203 4.203
2 C 0.015 3.985
3 H 0.118 0.882
4 C -0.141 4.141
5 C -0.194 4.194
6 C -0.041 4.041
7 C -0.182 4.182
8 C 0.348 3.652
9 O -0.468 6.468
10 N -0.357 5.357
11 C 0.003 3.997
12 C 0.022 3.978
13 N -0.391 5.391
14 C -0.378 4.378
15 H 0.103 0.897
16 C -0.271 4.271
17 N -0.621 5.621
18 Si 0.809 3.191
19 H -0.185 1.185
20 H -0.221 1.221
21 H -0.221 1.221
22 C -0.058 4.058
23 C -0.165 4.165
24 C 0.078 3.922
25 O -0.226 6.226
26 H 0.082 0.918
27 H 0.120 0.880
28 H 0.091 0.909
29 H 0.120 0.880
30 H 0.128 0.872
31 H 0.147 0.853
32 H 0.254 0.746
33 H 0.074 0.926
34 H 0.073 0.927
35 H 0.058 0.942
36 H 0.058 0.942
37 H 0.205 0.795
38 H 0.061 0.939
39 H 0.181 0.819
40 H 0.177 0.823
Dipole moment (debyes) X Y Z Total
from point charges -27.581 15.746 -6.105 32.341
hybrid contribution 1.115 -0.600 0.068 1.268
sum -26.466 15.146 -6.038 31.085
Atomic orbital electron populations
1.21915 0.90186 1.03726 1.04492 1.23736 0.97231 0.95593 0.81923
0.88176 1.21997 0.93316 0.99762 0.99007 1.20935 0.98382 1.05662
0.94378 1.20363 0.90534 0.92783 1.00401 1.19635 0.96406 1.07287
0.94823 1.18501 0.82812 0.77731 0.86108 1.90758 1.79906 1.60123
1.16002 1.45600 1.20377 1.58701 1.11072 1.21194 0.85812 0.96616
0.96094 1.20860 0.87188 0.95836 0.93957 1.42434 1.20909 1.69637
1.06093 1.19704 0.98016 1.28935 0.91118 0.89749 1.25694 1.01569
1.02758 0.97116 1.69850 1.31512 1.50459 1.10320 0.84979 0.78567
0.77111 0.78489 1.18517 1.22104 1.22122 1.21287 0.97390 0.94459
0.92685 1.20467 0.91681 1.03085 1.01292 1.20111 0.86681 0.92340
0.93071 1.86825 1.33518 1.62628 1.39608 0.91794 0.87973 0.90926
0.88018 0.87236 0.85289 0.74572 0.92632 0.92659 0.94249 0.94209
0.79456 0.93936 0.81916 0.82347
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -0.95 9.61 71.98 0.69 -0.26 16
2 C 0.07 0.77 4.24 31.17 0.13 0.90 16
3 H 0.10 0.87 8.14 -2.38 -0.02 0.85 16
4 C -0.10 -1.26 6.65 30.74 0.20 -1.05 16
5 C -0.19 -3.65 6.26 -19.55 -0.12 -3.77 16
6 C -0.02 -0.50 9.58 22.43 0.21 -0.28 16
7 C -0.18 -4.24 5.88 -20.06 -0.12 -4.36 16
8 C 0.56 17.02 7.77 86.71 0.67 17.69 16
9 O -0.59 -22.95 16.36 -3.96 -0.06 -23.02 16
10 N -0.70 -19.28 5.51 -466.21 -2.57 -21.85 16
11 C 0.13 4.44 5.79 86.38 0.50 4.94 16
12 C 0.15 5.64 6.37 86.38 0.55 6.19 16
13 N -0.75 -38.09 5.60 -343.45 -1.92 -40.01 16
14 C -0.25 -13.61 9.99 84.04 0.84 -12.77 16
15 H 0.08 4.37 7.83 -2.91 -0.02 4.35 16
16 C -0.08 -4.56 5.50 84.86 0.47 -4.09 16
17 N -0.97 -60.16 13.06 21.65 0.28 -59.88 16
18 Si 0.98 45.83 29.55 68.60 2.03 47.86 16
19 H -0.26 -11.26 7.11 99.48 0.71 -10.55 16
20 H -0.29 -13.77 7.11 99.48 0.71 -13.07 16
21 H -0.29 -13.79 7.11 99.48 0.71 -13.08 16
22 C -0.04 -0.69 9.52 22.46 0.21 -0.47 16
23 C -0.15 -2.41 10.05 22.41 0.23 -2.18 16
24 C 0.12 2.33 7.04 22.82 0.16 2.49 16
25 O -0.31 -5.41 10.80 -93.60 -1.01 -6.42 16
26 H 0.06 0.49 8.12 -2.39 -0.02 0.47 16
27 H 0.10 0.23 8.14 -2.39 -0.02 0.21 16
28 H 0.07 0.45 8.14 -2.39 -0.02 0.43 16
29 H 0.10 1.06 7.91 -2.39 -0.02 1.05 16
30 H 0.11 0.98 8.14 -2.39 -0.02 0.96 16
31 H 0.13 3.12 7.66 -2.91 -0.02 3.10 16
32 H 0.42 8.24 6.51 -92.71 -0.60 7.64 16
33 H 0.06 2.11 8.14 -2.39 -0.02 2.10 16
34 H 0.06 2.11 8.14 -2.39 -0.02 2.09 16
35 H 0.04 1.42 8.14 -2.39 -0.02 1.40 16
36 H 0.04 1.43 8.14 -2.39 -0.02 1.41 16
37 H 0.37 20.65 7.67 -92.71 -0.71 19.94 16
38 H 0.25 15.06 8.31 -92.71 -0.77 14.29 16
39 H 0.16 1.85 6.40 -2.91 -0.02 1.84 16
40 H 0.16 1.82 8.06 -2.91 -0.02 1.79 16
Total: -1.00 -74.26 340.05 1.13 -73.13
By element:
Atomic # 1 Polarization: 27.45 SS G_CDS: -0.25 Total: 27.20 kcal
Atomic # 6 Polarization: -1.66 SS G_CDS: 4.63 Total: 2.98 kcal
Atomic # 7 Polarization: -117.53 SS G_CDS: -4.21 Total: -121.73 kcal
Atomic # 8 Polarization: -28.36 SS G_CDS: -1.08 Total: -29.44 kcal
Atomic # 14 Polarization: 45.83 SS G_CDS: 2.03 Total: 47.86 kcal
Total: -74.26 1.13 -73.13 kcal
The number of atoms in the molecule is 40
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001135331323.mol2 40
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 16.192 kcal
(2) G-P(sol) polarization free energy of solvation -74.263 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.071 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.131 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.132 kcal
(6) G-S(sol) free energy of system = (1) + (5) -56.940 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.67 seconds