Wall clock time and date at job start Tue Mar 31 2020 02:47:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09001 * 109.59510 * 2 1 4 4 C 1.52991 * 109.59456 * 239.69722 * 2 1 3 5 5 N 1.46007 * 110.03997 * 189.93549 * 4 2 1 6 6 C 1.33716 * 122.92963 * 18.15918 * 5 4 2 7 7 O 1.21282 * 118.62262 * 178.28856 * 6 5 4 8 8 C 1.50254 * 122.75347 * 358.31612 * 6 5 4 9 9 N 1.46907 * 109.97705 * 17.20048 * 8 6 5 10 10 C 1.46894 * 111.00380 * 73.06733 * 9 8 6 11 11 C 1.50703 * 109.47206 * 66.04370 * 10 9 8 12 12 C 1.38297 * 119.93273 * 269.73339 * 11 10 9 13 13 C 1.38109 * 120.06731 * 179.72125 * 12 11 10 14 14 C 1.38879 * 119.92801 * 0.54649 * 13 12 11 15 15 O 1.35750 * 120.06492 * 179.74735 * 14 13 12 16 16 C 1.34829 * 116.99520 * 174.44134 * 15 14 13 17 17 H 1.07998 * 120.00542 * 5.05725 * 16 15 14 18 18 C 1.38659 * 120.00043 * 185.05583 * 16 15 14 19 19 N 1.31555 * 120.00107 * 180.02562 * 18 16 15 20 20 Si 1.86806 * 119.99659 * 0.02562 * 18 16 15 21 21 H 1.48501 * 109.46879 * 89.99805 * 20 18 16 22 22 H 1.48496 * 109.47092 * 209.99805 * 20 18 16 23 23 H 1.48495 * 109.47210 * 329.99964 * 20 18 16 24 24 C 1.38882 * 119.86323 * 359.72601 * 14 13 12 25 25 C 1.38097 * 119.93168 * 359.97438 * 24 14 13 26 26 H 1.09003 * 109.46935 * 180.30337 * 1 2 3 27 27 H 1.08999 * 109.47193 * 300.29861 * 1 2 3 28 28 H 1.08998 * 109.47172 * 60.30414 * 1 2 3 29 29 H 1.08992 * 109.37313 * 69.76179 * 4 2 1 30 30 H 1.08998 * 109.28241 * 310.04695 * 4 2 1 31 31 H 0.97001 * 118.53653 * 198.18361 * 5 4 2 32 32 H 1.08996 * 109.38707 * 137.35129 * 8 6 5 33 33 H 1.08996 * 109.38924 * 257.04671 * 8 6 5 34 34 H 1.08997 * 109.47435 * 186.04887 * 10 9 8 35 35 H 1.09005 * 109.47160 * 306.05436 * 10 9 8 36 36 H 1.07998 * 119.96705 * 359.97438 * 12 11 10 37 37 H 1.07994 * 120.03101 * 180.27128 * 13 12 11 38 38 H 0.97006 * 119.99796 * 180.02562 * 19 18 16 39 39 H 1.08000 * 120.03192 * 180.02562 * 24 14 13 40 40 H 1.07995 * 119.96901 * 180.02562 * 25 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8955 1.0269 0.0000 4 6 2.0430 -0.7272 -1.2444 5 7 3.4837 -0.9408 -1.1407 6 6 4.1472 -0.8721 0.0182 7 8 5.3395 -1.0941 0.0191 8 6 3.4774 -0.5319 1.3194 9 7 2.0236 -0.7029 1.1954 10 6 1.6624 -2.1262 1.1558 11 6 1.9865 -2.7638 2.4823 12 6 3.2316 -3.3284 2.6907 13 6 3.5336 -3.9084 3.9072 14 6 2.5814 -3.9342 4.9178 15 8 2.8735 -4.5081 6.1129 16 6 1.9482 -4.3977 7.0873 17 1 0.9919 -3.9430 6.8749 18 6 2.2242 -4.8681 8.3621 19 7 1.3212 -4.7609 9.3127 20 14 3.8785 -5.6542 8.7296 21 1 4.8344 -4.6095 9.1772 22 1 3.7171 -6.6693 9.8013 23 1 4.3993 -6.3085 7.5024 24 6 1.3300 -3.3714 4.7035 25 6 1.0363 -2.7875 3.4870 26 1 -0.3633 -1.0277 0.0054 27 1 -0.3633 0.5185 0.8873 28 1 -0.3633 0.5091 -0.8927 29 1 1.8292 -0.1264 -2.1282 30 1 1.5401 -1.6903 -1.3314 31 1 3.9818 -1.1411 -1.9486 32 1 3.8535 -1.1898 2.1028 33 1 3.6989 0.5029 1.5808 34 1 0.5954 -2.2249 0.9562 35 1 2.2271 -2.6226 0.3666 36 1 3.9700 -3.3122 1.9027 37 1 4.5076 -4.3452 4.0707 38 1 1.5145 -5.0897 10.2046 39 1 0.5876 -3.3896 5.4877 40 1 0.0635 -2.3492 3.3198 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001137121414.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:47:23 Heat of formation + Delta-G solvation = -22.450318 kcal Electronic energy + Delta-G solvation = -23058.456855 eV Core-core repulsion = 19646.212943 eV Total energy + Delta-G solvation = -3412.243912 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.00973 -39.17024 -37.92928 -36.67074 -34.34687 -32.46568 -32.10700 -30.51803 -30.06643 -27.23491 -26.48417 -25.30939 -24.09784 -22.11536 -21.99811 -20.73561 -18.79849 -17.91074 -17.43608 -17.26238 -16.97255 -15.86255 -15.70300 -15.14652 -14.89291 -14.40006 -14.25607 -14.00810 -13.75195 -13.55766 -13.45224 -13.25034 -12.78895 -12.60144 -12.28106 -12.22662 -12.07257 -11.73481 -11.57331 -11.40016 -11.09412 -10.79946 -10.70091 -10.68636 -10.49809 -10.15008 -9.39428 -9.39242 -8.87713 -8.44010 -8.25868 -7.34281 -6.42631 -4.09136 2.08909 2.13897 2.43927 2.95801 3.22242 3.26387 3.40908 3.69732 4.20066 4.23563 4.46139 4.53492 4.66270 4.77184 4.84995 5.00540 5.07379 5.09793 5.13809 5.29124 5.38350 5.43380 5.57316 5.61048 5.68485 5.73604 5.75925 5.93677 6.12597 6.30447 6.43227 6.54699 6.70596 6.78224 6.80160 7.01057 7.05559 7.22601 7.30301 7.59623 7.79016 7.97722 8.02581 8.92696 9.54959 10.64846 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.028030 B = 0.003661 C = 0.003354 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 998.698231 B = 7645.791315 C = 8347.004074 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.062 3.938 3 H 0.092 0.908 4 C 0.076 3.924 5 N -0.726 5.726 6 C 0.490 3.510 7 O -0.552 6.552 8 C 0.033 3.967 9 N -0.513 5.513 10 C 0.101 3.899 11 C -0.177 4.177 12 C -0.072 4.072 13 C -0.191 4.191 14 C 0.163 3.837 15 O -0.216 6.216 16 C -0.390 4.390 17 H 0.107 0.893 18 C 0.064 3.936 19 N -0.879 5.879 20 Si 0.905 3.095 21 H -0.273 1.273 22 H -0.282 1.282 23 H -0.260 1.260 24 C -0.222 4.222 25 C -0.048 4.048 26 H 0.062 0.938 27 H 0.073 0.927 28 H 0.062 0.938 29 H 0.080 0.920 30 H 0.070 0.930 31 H 0.397 0.603 32 H 0.126 0.874 33 H 0.110 0.890 34 H 0.084 0.916 35 H 0.037 0.963 36 H 0.108 0.892 37 H 0.117 0.883 38 H 0.280 0.720 39 H 0.133 0.867 40 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.033 8.979 -20.390 22.372 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.047 4.047 3 H 0.110 0.890 4 C -0.050 4.050 5 N -0.379 5.379 6 C 0.276 3.724 7 O -0.428 6.428 8 C -0.097 4.097 9 N -0.237 5.237 10 C -0.025 4.025 11 C -0.178 4.178 12 C -0.091 4.091 13 C -0.210 4.210 14 C 0.110 3.890 15 O -0.121 6.121 16 C -0.465 4.465 17 H 0.124 0.876 18 C -0.139 4.139 19 N -0.516 5.516 20 Si 0.730 3.270 21 H -0.198 1.198 22 H -0.208 1.208 23 H -0.184 1.184 24 C -0.241 4.241 25 C -0.067 4.067 26 H 0.081 0.919 27 H 0.092 0.908 28 H 0.081 0.919 29 H 0.098 0.902 30 H 0.088 0.912 31 H 0.232 0.768 32 H 0.143 0.857 33 H 0.128 0.872 34 H 0.102 0.898 35 H 0.055 0.945 36 H 0.126 0.874 37 H 0.135 0.865 38 H 0.090 0.910 39 H 0.151 0.849 40 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -1.627 8.945 -19.423 21.446 hybrid contribution 1.019 -0.712 -0.770 1.462 sum -0.608 8.233 -20.194 21.816 Atomic orbital electron populations 1.21789 0.92533 1.02890 1.02773 1.22116 0.97102 0.98437 0.87092 0.89019 1.22202 0.80649 1.01497 1.00626 1.45636 1.09276 1.72829 1.10142 1.21458 0.87775 0.76123 0.87077 1.90761 1.15693 1.49428 1.86940 1.22579 0.87402 1.05457 0.94299 1.62679 1.10889 1.12944 1.37190 1.21020 1.00930 0.85806 0.94747 1.19068 0.95596 1.07104 0.96023 1.20519 0.95485 0.97287 0.95810 1.20174 0.99288 1.08285 0.93240 1.19139 0.92706 0.90812 0.86315 1.83576 1.44711 1.65787 1.18041 1.20778 0.96403 1.41460 0.87887 0.87555 1.24466 0.99031 0.96533 0.93900 1.69646 1.34319 1.45011 1.02662 0.86190 0.82699 0.79416 0.78671 1.19829 1.20775 1.18360 1.21278 0.98017 1.05950 0.98858 1.20588 0.97866 0.96168 0.92090 0.91909 0.90756 0.91886 0.90211 0.91167 0.76773 0.85670 0.87203 0.89757 0.94465 0.87402 0.86538 0.91029 0.84916 0.87138 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.89 9.14 37.16 0.34 -0.55 16 2 C 0.06 0.47 2.84 -67.56 -0.19 0.28 16 3 H 0.09 0.67 8.08 -51.93 -0.42 0.25 16 4 C 0.08 0.51 5.77 -4.31 -0.02 0.49 16 5 N -0.73 -6.77 5.33 -61.07 -0.33 -7.09 16 6 C 0.49 6.25 7.08 -11.67 -0.08 6.17 16 7 O -0.55 -9.28 17.82 5.56 0.10 -9.18 16 8 C 0.03 0.41 5.71 -5.19 -0.03 0.38 16 9 N -0.51 -5.60 4.78 -229.56 -1.10 -6.70 16 10 C 0.10 1.21 4.08 -4.98 -0.02 1.18 16 11 C -0.18 -2.78 4.92 -104.57 -0.51 -3.29 16 12 C -0.07 -1.23 7.84 -39.61 -0.31 -1.54 16 13 C -0.19 -3.80 9.99 -39.39 -0.39 -4.19 16 14 C 0.16 3.72 6.65 -39.11 -0.26 3.46 16 15 O -0.22 -5.70 8.59 0.05 0.00 -5.70 16 16 C -0.39 -10.93 9.95 30.89 0.31 -10.62 16 17 H 0.11 3.03 5.44 -52.49 -0.29 2.74 16 18 C 0.06 1.79 5.49 -17.51 -0.10 1.70 16 19 N -0.88 -25.27 13.96 55.48 0.77 -24.49 16 20 Si 0.90 21.72 28.62 -169.99 -4.86 16.85 16 21 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 22 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 23 H -0.26 -6.27 7.11 56.52 0.40 -5.87 16 24 C -0.22 -4.66 9.17 -39.39 -0.36 -5.02 16 25 C -0.05 -0.83 9.69 -39.61 -0.38 -1.22 16 26 H 0.06 0.40 6.35 -51.93 -0.33 0.07 16 27 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 28 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 29 H 0.08 0.36 8.14 -51.93 -0.42 -0.07 16 30 H 0.07 0.47 7.03 -51.93 -0.37 0.10 16 31 H 0.40 3.29 8.84 -40.82 -0.36 2.93 16 32 H 0.13 1.79 5.31 -51.93 -0.28 1.52 16 33 H 0.11 1.19 8.14 -51.93 -0.42 0.77 16 34 H 0.08 0.88 6.03 -51.93 -0.31 0.57 16 35 H 0.04 0.45 6.13 -51.93 -0.32 0.13 16 36 H 0.11 1.70 7.82 -52.49 -0.41 1.29 16 37 H 0.12 2.22 8.06 -52.49 -0.42 1.79 16 38 H 0.28 7.43 8.31 -40.82 -0.34 7.09 16 39 H 0.13 2.94 5.64 -52.49 -0.30 2.64 16 40 H 0.11 1.64 8.06 -52.49 -0.42 1.21 16 LS Contribution 322.39 15.07 4.86 4.86 Total: -1.00 -31.63 322.39 -7.62 -39.26 By element: Atomic # 1 Polarization: 10.01 SS G_CDS: -5.05 Total: 4.97 kcal Atomic # 6 Polarization: -10.75 SS G_CDS: -2.02 Total: -12.77 kcal Atomic # 7 Polarization: -37.64 SS G_CDS: -0.65 Total: -38.28 kcal Atomic # 8 Polarization: -14.98 SS G_CDS: 0.10 Total: -14.88 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -4.86 Total: 16.85 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -31.63 -7.62 -39.26 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001137121414.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.807 kcal (2) G-P(sol) polarization free energy of solvation -31.635 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.828 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.622 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.257 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.450 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds