Wall clock time and date at job start Tue Mar 31 2020 02:46:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.32998 * 1 3 3 C 1.47107 * 119.99600 * 2 1 4 4 O 1.21619 * 119.99932 * 0.02562 * 3 2 1 5 5 N 1.34776 * 119.99957 * 179.97438 * 3 2 1 6 6 C 1.49869 * 127.93111 * 4.02478 * 5 3 2 7 7 C 1.54946 * 103.40207 * 219.93121 * 6 5 3 8 8 C 1.54581 * 102.85593 * 322.45073 * 7 6 5 9 9 H 1.08999 * 118.12105 * 242.38439 * 8 7 6 10 10 C 1.52927 * 118.20329 * 85.42864 * 8 7 6 11 11 C 1.47527 * 127.04425 * 184.83754 * 5 3 2 12 12 C 1.50696 * 117.37158 * 295.06532 * 11 5 3 13 13 O 1.21281 * 119.99655 * 172.89025 * 12 11 5 14 14 N 1.34768 * 120.00127 * 352.89519 * 12 11 5 15 15 C 1.47588 * 134.49200 * 174.71115 * 14 12 11 16 16 C 1.53947 * 86.23772 * 155.42318 * 15 14 12 17 17 C 1.50699 * 113.73736 * 137.89769 * 16 15 14 18 18 H 1.08000 * 120.00261 * 359.97438 * 17 16 15 19 19 C 1.37884 * 119.99657 * 179.97438 * 17 16 15 20 20 N 1.31507 * 120.00157 * 359.97438 * 19 17 16 21 21 Si 1.86798 * 119.99836 * 179.97438 * 19 17 16 22 22 H 1.48506 * 109.47036 * 60.00241 * 21 19 17 23 23 H 1.48509 * 109.47119 * 179.97438 * 21 19 17 24 24 H 1.48497 * 109.47531 * 299.99972 * 21 19 17 25 25 C 1.47808 * 134.58511 * 354.65491 * 14 12 11 26 26 H 1.07994 * 120.00132 * 0.02562 * 1 2 3 27 27 H 1.08005 * 119.99471 * 180.02562 * 1 2 3 28 28 H 1.07994 * 120.00132 * 179.97438 * 2 1 3 29 29 H 1.09003 * 110.69746 * 101.39501 * 6 5 3 30 30 H 1.09004 * 110.63280 * 338.44219 * 6 5 3 31 31 H 1.08998 * 110.73473 * 204.10489 * 7 6 5 32 32 H 1.09004 * 110.73210 * 80.78942 * 7 6 5 33 33 H 1.08997 * 117.45827 * 160.76889 * 10 8 7 34 34 H 1.09002 * 117.45637 * 15.98779 * 10 8 7 35 35 H 1.08994 * 113.77061 * 41.06090 * 15 14 12 36 36 H 1.09006 * 113.76435 * 269.77883 * 15 14 12 37 37 H 1.08999 * 113.73747 * 269.19716 * 16 15 14 38 38 H 0.96998 * 120.00293 * 180.02562 * 20 19 17 39 39 H 1.09004 * 113.66458 * 90.26907 * 25 14 12 40 40 H 1.08995 * 113.93974 * 318.92468 * 25 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3300 0.0000 0.0000 3 6 2.0654 1.2740 0.0000 4 8 1.4572 2.3272 0.0005 5 7 3.4132 1.2741 0.0005 6 6 4.3346 0.0950 -0.0818 7 6 5.4665 0.4535 0.9136 8 6 5.6359 1.9762 0.7079 9 1 6.5948 2.3414 0.3401 10 6 4.7229 2.9177 1.4944 11 6 4.3018 2.4475 0.0999 12 6 4.2671 3.4409 -1.0328 13 8 4.8785 4.4844 -0.9431 14 7 3.5565 3.1696 -2.1454 15 6 3.2245 3.9235 -3.3700 16 6 3.0507 2.5513 -4.0458 17 6 1.8505 2.4698 -4.9535 18 1 1.2079 3.3289 -5.0776 19 6 1.5728 1.2983 -5.6255 20 7 2.3555 0.2523 -5.4748 21 14 0.0846 1.1970 -6.7501 22 1 0.2103 2.2088 -7.8298 23 1 0.0089 -0.1595 -7.3499 24 1 -1.1480 1.4611 -5.9652 25 6 2.7971 1.9985 -2.6317 26 1 -0.5400 0.9352 -0.0004 27 1 -0.5399 -0.9354 0.0004 28 1 1.8700 -0.9352 0.0004 29 1 4.7307 -0.0146 -1.0914 30 1 3.8223 -0.8153 0.2299 31 1 6.3854 -0.0749 0.6596 32 1 5.1640 0.2337 1.9375 33 1 5.0415 3.9547 1.6001 34 1 4.1874 2.5018 2.3479 35 1 4.0560 4.5063 -3.7661 36 1 2.3004 4.4969 -3.2958 37 1 3.9616 2.1717 -4.5087 38 1 2.1603 -0.5717 -5.9479 39 1 1.7471 2.0056 -2.3389 40 1 3.2857 1.0435 -2.4391 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001268862051.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:46:47 Heat of formation + Delta-G solvation = 15.185146 kcal Electronic energy + Delta-G solvation = -24281.771310 eV Core-core repulsion = 20871.159395 eV Total energy + Delta-G solvation = -3410.611916 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.12458 -40.30646 -39.59654 -38.30668 -34.69602 -34.39510 -33.39210 -31.73289 -30.73683 -27.45208 -26.97683 -25.75346 -24.46921 -23.62324 -22.05874 -21.34307 -20.48195 -19.29361 -18.88193 -18.50759 -17.66899 -17.22602 -16.64543 -16.59973 -16.14490 -15.62562 -15.44121 -14.99746 -14.86361 -14.54755 -14.27525 -14.10767 -13.82154 -13.70949 -13.31352 -13.13851 -12.95178 -12.81720 -12.70414 -12.62634 -12.26195 -12.07059 -11.92102 -11.55179 -11.30133 -11.22855 -10.97124 -10.75839 -10.74516 -10.58128 -9.69390 -9.59473 -8.19386 -6.30496 0.47055 1.27012 1.45029 1.45532 1.53462 1.76180 1.90732 2.31598 2.43059 2.57377 3.09843 3.29265 3.41655 3.56087 3.78205 3.90985 4.11574 4.19207 4.22201 4.32421 4.34818 4.43905 4.48237 4.53712 4.66111 4.67593 4.71442 4.75670 4.78095 4.88412 4.96850 5.01968 5.13201 5.27491 5.32432 5.50746 5.53266 5.75829 6.17728 6.48182 6.73960 6.80042 7.02341 7.16573 7.38160 8.90388 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.016713 B = 0.006138 C = 0.005289 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1674.959186 B = 4560.287423 C = 5292.653829 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C -0.221 4.221 3 C 0.555 3.445 4 O -0.586 6.586 5 N -0.588 5.588 6 C 0.094 3.906 7 C -0.091 4.091 8 C -0.098 4.098 9 H 0.133 0.867 10 C -0.109 4.109 11 C 0.011 3.989 12 C 0.555 3.445 13 O -0.598 6.598 14 N -0.631 5.631 15 C 0.104 3.896 16 C 0.028 3.972 17 C -0.538 4.538 18 H 0.057 0.943 19 C 0.028 3.972 20 N -0.910 5.910 21 Si 0.956 3.044 22 H -0.272 1.272 23 H -0.277 1.277 24 H -0.273 1.273 25 C 0.143 3.857 26 H 0.090 0.910 27 H 0.156 0.844 28 H 0.161 0.839 29 H 0.069 0.931 30 H 0.122 0.878 31 H 0.123 0.877 32 H 0.104 0.896 33 H 0.105 0.895 34 H 0.120 0.880 35 H 0.066 0.934 36 H 0.069 0.931 37 H 0.042 0.958 38 H 0.267 0.733 39 H 0.054 0.946 40 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.497 -8.550 14.139 16.889 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.241 4.241 3 C 0.349 3.651 4 O -0.467 6.467 5 N -0.321 5.321 6 C -0.026 4.026 7 C -0.128 4.128 8 C -0.118 4.118 9 H 0.151 0.849 10 C -0.147 4.147 11 C -0.079 4.079 12 C 0.346 3.654 13 O -0.481 6.481 14 N -0.362 5.362 15 C -0.018 4.018 16 C 0.009 3.991 17 C -0.576 4.576 18 H 0.075 0.925 19 C -0.173 4.173 20 N -0.548 5.548 21 Si 0.781 3.219 22 H -0.197 1.197 23 H -0.202 1.202 24 H -0.198 1.198 25 C 0.020 3.980 26 H 0.108 0.892 27 H 0.173 0.827 28 H 0.178 0.822 29 H 0.088 0.912 30 H 0.140 0.860 31 H 0.141 0.859 32 H 0.123 0.877 33 H 0.123 0.877 34 H 0.138 0.862 35 H 0.085 0.915 36 H 0.087 0.913 37 H 0.060 0.940 38 H 0.076 0.924 39 H 0.072 0.928 40 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 3.511 -7.652 14.252 16.553 hybrid contribution -0.896 0.562 -1.002 1.457 sum 2.615 -7.090 13.250 15.254 Atomic orbital electron populations 1.24986 0.95132 1.04079 0.87851 1.22852 0.96631 0.95984 1.08674 1.19069 0.80481 0.90819 0.74763 1.90792 1.68099 1.35509 1.52318 1.48720 1.03917 1.07185 1.72290 1.23418 0.90086 0.88512 1.00593 1.22510 0.99584 0.90070 1.00652 1.24030 0.91844 0.96539 0.99340 0.84940 1.23451 0.99426 1.00681 0.91163 1.21549 0.97971 0.93212 0.95173 1.19751 0.78175 0.86149 0.81327 1.90584 1.48105 1.28104 1.81294 1.50266 1.48820 1.19746 1.17341 1.23383 0.98626 0.97848 0.81969 1.20406 0.97154 0.89827 0.91690 1.21159 1.10495 0.98619 1.27370 0.92526 1.25677 0.99106 0.95189 0.97312 1.70017 1.38798 1.02875 1.43071 0.85653 0.79725 0.77483 0.79069 1.19743 1.20243 1.19794 1.23290 0.93400 0.87772 0.93490 0.89162 0.82666 0.82205 0.91234 0.85983 0.85900 0.87746 0.87652 0.86205 0.91535 0.91311 0.94022 0.92374 0.92807 0.91864 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.93 14.31 66.65 0.95 -0.97 16 2 C -0.22 -5.68 9.59 23.43 0.22 -5.46 16 3 C 0.55 19.37 5.29 86.57 0.46 19.83 16 4 O -0.59 -26.22 15.56 -4.09 -0.06 -26.29 16 5 N -0.59 -17.95 1.81 -766.35 -1.39 -19.34 16 6 C 0.09 1.89 6.69 86.39 0.58 2.47 16 7 C -0.09 -1.30 6.86 31.80 0.22 -1.08 16 8 C -0.10 -2.23 6.92 -9.94 -0.07 -2.30 16 9 H 0.13 2.92 8.14 -2.39 -0.02 2.90 16 10 C -0.11 -2.89 9.82 30.59 0.30 -2.59 16 11 C 0.01 0.37 2.47 3.02 0.01 0.38 16 12 C 0.56 24.97 7.89 87.66 0.69 25.66 16 13 O -0.60 -29.50 17.33 -3.03 -0.05 -29.56 16 14 N -0.63 -29.85 3.62 -833.66 -3.02 -32.87 16 15 C 0.10 5.01 8.38 86.48 0.73 5.73 16 16 C 0.03 1.47 3.62 -10.89 -0.04 1.43 16 17 C -0.54 -29.28 8.77 25.60 0.22 -29.05 16 18 H 0.06 3.06 7.81 -2.91 -0.02 3.04 16 19 C 0.03 1.50 5.46 84.66 0.46 1.96 16 20 N -0.91 -49.51 13.27 21.45 0.28 -49.23 16 21 Si 0.96 41.82 29.54 68.60 2.03 43.85 16 22 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 23 H -0.28 -11.67 7.11 99.48 0.71 -10.96 16 24 H -0.27 -11.76 7.11 99.48 0.71 -11.06 16 25 C 0.14 6.80 5.44 86.43 0.47 7.27 16 26 H 0.09 2.55 7.49 -2.91 -0.02 2.53 16 27 H 0.16 2.30 8.06 -2.91 -0.02 2.27 16 28 H 0.16 2.84 6.69 -2.91 -0.02 2.82 16 29 H 0.07 1.62 7.67 -2.39 -0.02 1.60 16 30 H 0.12 1.62 6.67 -2.39 -0.02 1.60 16 31 H 0.12 1.10 8.14 -2.39 -0.02 1.08 16 32 H 0.10 1.10 8.14 -2.38 -0.02 1.08 16 33 H 0.11 3.01 7.91 -2.39 -0.02 2.99 16 34 H 0.12 2.69 8.14 -2.39 -0.02 2.67 16 35 H 0.07 3.06 8.14 -2.39 -0.02 3.04 16 36 H 0.07 3.33 8.09 -2.38 -0.02 3.31 16 37 H 0.04 2.30 8.13 -2.39 -0.02 2.28 16 38 H 0.27 13.69 8.31 -92.71 -0.77 12.92 16 39 H 0.05 2.79 6.55 -2.38 -0.02 2.77 16 40 H 0.06 2.89 6.66 -2.39 -0.02 2.87 16 Total: -1.00 -75.47 334.71 4.04 -71.43 By element: Atomic # 1 Polarization: 17.69 SS G_CDS: 1.04 Total: 18.73 kcal Atomic # 6 Polarization: 18.06 SS G_CDS: 5.21 Total: 23.27 kcal Atomic # 7 Polarization: -97.31 SS G_CDS: -4.12 Total: -101.43 kcal Atomic # 8 Polarization: -55.73 SS G_CDS: -0.12 Total: -55.84 kcal Atomic # 14 Polarization: 41.82 SS G_CDS: 2.03 Total: 43.85 kcal Total: -75.47 4.04 -71.43 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001268862051.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.611 kcal (2) G-P(sol) polarization free energy of solvation -75.465 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.146 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.039 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.426 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.185 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds