Wall clock time and date at job start Tue Mar 31 2020 02:46:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.32999 * 1 3 3 C 1.47104 * 120.00031 * 2 1 4 4 O 1.21622 * 119.99905 * 0.02562 * 3 2 1 5 5 N 1.34769 * 120.00220 * 179.72460 * 3 2 1 6 6 C 1.48096 * 126.94457 * 355.57405 * 5 3 2 7 7 C 1.55123 * 103.17995 * 219.43573 * 6 5 3 8 8 C 1.54703 * 102.53350 * 322.00451 * 7 6 5 9 9 H 1.08999 * 117.83029 * 163.09833 * 8 7 6 10 10 C 1.55462 * 118.10907 * 320.25794 * 8 7 6 11 11 C 1.47387 * 126.94679 * 175.89492 * 5 3 2 12 12 C 1.50696 * 117.18176 * 15.70575 * 11 5 3 13 13 O 1.21283 * 119.99888 * 227.10795 * 12 11 5 14 14 N 1.34783 * 119.99910 * 47.10443 * 12 11 5 15 15 C 1.47067 * 136.05653 * 5.12318 * 14 12 11 16 16 C 1.53243 * 88.08064 * 207.19981 * 15 14 12 17 17 C 1.50699 * 114.50302 * 220.45863 * 16 15 14 18 18 H 1.08002 * 119.99855 * 93.84956 * 17 16 15 19 19 C 1.37871 * 119.99822 * 273.84463 * 17 16 15 20 20 N 1.31511 * 120.00457 * 0.02562 * 19 17 16 21 21 Si 1.86802 * 119.99955 * 180.02562 * 19 17 16 22 22 H 1.48503 * 109.47399 * 90.00083 * 21 19 17 23 23 H 1.48505 * 109.47213 * 209.99917 * 21 19 17 24 24 H 1.48502 * 109.47211 * 329.99664 * 21 19 17 25 25 C 1.47064 * 136.05371 * 185.48872 * 14 12 11 26 26 H 1.07997 * 120.00021 * 0.02562 * 1 2 3 27 27 H 1.07995 * 119.99781 * 179.97438 * 1 2 3 28 28 H 1.07997 * 120.00021 * 179.97438 * 2 1 3 29 29 H 1.09002 * 110.66237 * 337.50430 * 6 5 3 30 30 H 1.09000 * 110.65771 * 100.61400 * 6 5 3 31 31 H 1.09007 * 110.33953 * 203.98714 * 7 6 5 32 32 H 1.09000 * 111.35602 * 80.48682 * 7 6 5 33 33 H 1.08999 * 118.03258 * 344.23482 * 10 8 7 34 34 H 1.09002 * 117.18217 * 198.96230 * 10 8 7 35 35 H 1.09000 * 113.46972 * 321.93249 * 15 14 12 36 36 H 1.09003 * 113.46338 * 92.37210 * 15 14 12 37 37 H 1.09000 * 114.01421 * 87.71459 * 16 15 14 38 38 H 0.97003 * 120.00570 * 179.97438 * 20 19 17 39 39 H 1.09002 * 113.46697 * 267.62217 * 25 14 12 40 40 H 1.08991 * 113.46891 * 38.01160 * 25 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3300 0.0000 0.0000 3 6 2.0655 1.2740 0.0000 4 8 1.4574 2.3272 0.0005 5 7 3.4132 1.2740 0.0056 6 6 4.3030 0.0942 0.1035 7 6 5.4440 0.5877 1.0313 8 6 5.6366 2.0536 0.5760 9 1 6.1798 2.7256 1.2404 10 6 5.5556 2.3648 -0.9450 11 6 4.2994 2.4487 -0.0778 12 6 3.6807 3.7978 0.1834 13 8 3.9023 4.7225 -0.5694 14 7 2.8810 3.9766 1.2535 15 6 2.4588 3.1676 2.4069 16 6 1.1691 3.9942 2.4490 17 6 0.7041 4.3566 3.8359 18 1 0.9905 5.3024 4.2716 19 6 -0.0871 3.4807 4.5485 20 7 -0.4356 2.3289 4.0182 21 14 -0.6642 3.9302 6.2674 22 1 -1.9632 4.6448 6.1824 23 1 -0.8313 2.6937 7.0726 24 1 0.3432 4.8094 6.9136 25 6 2.0416 5.0642 1.7781 26 1 -0.5400 0.9353 -0.0004 27 1 -0.5399 -0.9353 -0.0004 28 1 1.8700 -0.9353 0.0004 29 1 3.7792 -0.7458 0.5598 30 1 4.6883 -0.1794 -0.8787 31 1 6.3504 0.0072 0.8589 32 1 5.1497 0.5442 2.0799 33 1 5.6297 1.5311 -1.6431 34 1 5.9947 3.3026 -1.2854 35 1 2.2924 2.1183 2.1635 36 1 3.0896 3.3022 3.2856 37 1 0.3722 3.6055 1.8151 38 1 -0.9919 1.7124 4.5197 39 1 2.5601 5.7090 2.4877 40 1 1.5219 5.6248 1.0012 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001268862052.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:46:50 Heat of formation + Delta-G solvation = 27.521374 kcal Electronic energy + Delta-G solvation = -24457.173689 eV Core-core repulsion = 21047.096712 eV Total energy + Delta-G solvation = -3410.076977 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.16252 -40.35258 -39.55745 -38.36774 -34.64096 -34.29175 -33.29728 -31.61323 -30.62045 -27.35113 -26.75374 -25.63515 -25.14908 -23.47239 -21.75863 -21.35769 -20.27975 -19.11151 -18.94000 -18.41181 -17.64568 -17.16007 -16.64494 -16.38750 -16.15761 -16.01289 -15.28622 -14.86368 -14.81333 -14.42017 -14.24794 -13.98968 -13.82658 -13.62533 -13.25731 -13.16886 -12.93267 -12.75202 -12.71716 -12.62285 -12.18320 -12.07414 -11.70566 -11.64910 -11.23895 -11.06446 -10.85070 -10.68701 -10.66101 -10.50269 -9.51083 -9.44767 -8.13702 -6.26981 0.51964 1.27178 1.45061 1.46546 1.56576 1.96591 2.00216 2.32300 2.44974 2.68130 3.13768 3.34926 3.39142 3.59596 3.82360 3.89463 4.06016 4.23667 4.24950 4.38432 4.41076 4.48850 4.62529 4.64064 4.67639 4.73905 4.76336 4.78960 4.95487 4.98941 5.04342 5.10088 5.17917 5.24997 5.33717 5.59130 5.61302 5.86120 6.26604 6.53646 6.80505 6.92499 7.14008 7.25845 7.41812 8.95523 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.016971 B = 0.006134 C = 0.005398 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1649.498758 B = 4563.987498 C = 5185.775912 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C -0.214 4.214 3 C 0.535 3.465 4 O -0.560 6.560 5 N -0.586 5.586 6 C 0.090 3.910 7 C -0.094 4.094 8 C -0.136 4.136 9 H 0.122 0.878 10 C -0.103 4.103 11 C 0.022 3.978 12 C 0.569 3.431 13 O -0.606 6.606 14 N -0.612 5.612 15 C 0.133 3.867 16 C 0.042 3.958 17 C -0.537 4.537 18 H 0.063 0.937 19 C 0.024 3.976 20 N -0.909 5.909 21 Si 0.961 3.039 22 H -0.278 1.278 23 H -0.280 1.280 24 H -0.266 1.266 25 C 0.101 3.899 26 H 0.076 0.924 27 H 0.155 0.845 28 H 0.167 0.833 29 H 0.110 0.890 30 H 0.105 0.895 31 H 0.130 0.870 32 H 0.079 0.921 33 H 0.137 0.863 34 H 0.107 0.893 35 H 0.049 0.951 36 H 0.067 0.933 37 H 0.033 0.967 38 H 0.264 0.736 39 H 0.082 0.918 40 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.629 -12.787 -5.571 18.160 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.234 4.234 3 C 0.328 3.672 4 O -0.439 6.439 5 N -0.320 5.320 6 C -0.030 4.030 7 C -0.132 4.132 8 C -0.155 4.155 9 H 0.140 0.860 10 C -0.142 4.142 11 C -0.068 4.068 12 C 0.360 3.640 13 O -0.489 6.489 14 N -0.342 5.342 15 C 0.010 3.990 16 C 0.023 3.977 17 C -0.575 4.575 18 H 0.081 0.919 19 C -0.177 4.177 20 N -0.547 5.547 21 Si 0.786 3.214 22 H -0.204 1.204 23 H -0.205 1.205 24 H -0.190 1.190 25 C -0.021 4.021 26 H 0.095 0.905 27 H 0.173 0.827 28 H 0.184 0.816 29 H 0.128 0.872 30 H 0.123 0.877 31 H 0.148 0.852 32 H 0.097 0.903 33 H 0.155 0.845 34 H 0.126 0.874 35 H 0.068 0.932 36 H 0.085 0.915 37 H 0.051 0.949 38 H 0.073 0.927 39 H 0.100 0.900 40 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 11.313 -11.968 -6.084 17.556 hybrid contribution -0.846 0.811 0.730 1.381 sum 10.466 -11.156 -5.353 16.207 Atomic orbital electron populations 1.24888 0.95567 1.03463 0.88166 1.22796 0.96153 0.95957 1.08502 1.19251 0.80830 0.91170 0.75977 1.90936 1.67976 1.34910 1.50082 1.48236 1.03932 1.07095 1.72757 1.23096 0.90530 0.87580 1.01786 1.22430 0.99797 0.91479 0.99471 1.24418 0.95138 0.99920 0.96074 0.86013 1.23792 0.92515 1.04809 0.93063 1.21526 0.87685 0.85147 1.12394 1.19261 0.76829 0.88714 0.79210 1.90569 1.64003 1.45025 1.49306 1.49488 1.43252 1.19161 1.22332 1.23019 0.95809 0.95967 0.84186 1.19983 0.91548 0.91189 0.95006 1.21227 1.32569 1.04020 0.99710 0.91926 1.25773 0.95216 0.94770 1.01955 1.70113 1.36423 1.09312 1.38817 0.85527 0.78658 0.77813 0.79429 1.20423 1.20487 1.19007 1.23230 0.91014 0.92668 0.95228 0.90523 0.82727 0.81585 0.87154 0.87654 0.85216 0.90272 0.84526 0.87448 0.93221 0.91515 0.94852 0.92719 0.89992 0.94117 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -2.35 14.31 66.65 0.95 -1.40 16 2 C -0.21 -5.98 9.50 23.43 0.22 -5.75 16 3 C 0.54 20.08 5.87 86.57 0.51 20.59 16 4 O -0.56 -27.64 11.44 -4.10 -0.05 -27.69 16 5 N -0.59 -17.85 3.01 -771.31 -2.32 -20.17 16 6 C 0.09 1.51 6.38 86.80 0.55 2.07 16 7 C -0.09 -1.46 7.04 31.90 0.22 -1.24 16 8 C -0.14 -3.11 7.13 -9.03 -0.06 -3.17 16 9 H 0.12 2.83 8.14 -2.39 -0.02 2.81 16 10 C -0.10 -2.45 9.54 31.40 0.30 -2.15 16 11 C 0.02 0.74 3.04 2.98 0.01 0.75 16 12 C 0.57 26.26 6.50 87.65 0.57 26.83 16 13 O -0.61 -31.43 17.43 -3.04 -0.05 -31.48 16 14 N -0.61 -29.59 2.49 -858.75 -2.14 -31.73 16 15 C 0.13 6.44 6.88 83.10 0.57 7.02 16 16 C 0.04 2.28 3.37 -11.29 -0.04 2.24 16 17 C -0.54 -29.70 8.84 25.60 0.23 -29.48 16 18 H 0.06 3.35 7.81 -2.91 -0.02 3.33 16 19 C 0.02 1.29 5.46 84.65 0.46 1.75 16 20 N -0.91 -51.56 13.26 21.44 0.28 -51.27 16 21 Si 0.96 42.40 29.54 68.60 2.03 44.43 16 22 H -0.28 -12.18 7.11 99.48 0.71 -11.47 16 23 H -0.28 -11.94 7.11 99.48 0.71 -11.23 16 24 H -0.27 -11.32 7.11 99.48 0.71 -10.61 16 25 C 0.10 5.08 8.19 83.19 0.68 5.76 16 26 H 0.08 2.84 7.49 -2.91 -0.02 2.82 16 27 H 0.16 2.94 8.06 -2.91 -0.02 2.91 16 28 H 0.17 2.94 6.78 -2.91 -0.02 2.92 16 29 H 0.11 1.40 6.79 -2.39 -0.02 1.38 16 30 H 0.11 1.18 7.32 -2.39 -0.02 1.17 16 31 H 0.13 1.00 8.14 -2.38 -0.02 0.98 16 32 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 33 H 0.14 2.28 7.21 -2.39 -0.02 2.26 16 34 H 0.11 2.77 7.98 -2.39 -0.02 2.75 16 35 H 0.05 2.44 5.66 -2.39 -0.01 2.43 16 36 H 0.07 3.13 8.10 -2.39 -0.02 3.11 16 37 H 0.03 2.09 7.33 -2.39 -0.02 2.07 16 38 H 0.26 14.05 8.31 -92.71 -0.77 13.28 16 39 H 0.08 3.81 8.10 -2.39 -0.02 3.79 16 40 H 0.04 2.09 8.14 -2.39 -0.02 2.07 16 Total: -1.00 -79.92 330.05 3.97 -75.94 By element: Atomic # 1 Polarization: 17.12 SS G_CDS: 1.05 Total: 18.16 kcal Atomic # 6 Polarization: 18.63 SS G_CDS: 5.18 Total: 23.81 kcal Atomic # 7 Polarization: -99.00 SS G_CDS: -4.18 Total: -103.18 kcal Atomic # 8 Polarization: -59.07 SS G_CDS: -0.10 Total: -59.17 kcal Atomic # 14 Polarization: 42.40 SS G_CDS: 2.03 Total: 44.43 kcal Total: -79.92 3.97 -75.94 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001268862052.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.464 kcal (2) G-P(sol) polarization free energy of solvation -79.916 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.548 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.973 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.943 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.521 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds