Wall clock time and date at job start Tue Mar 31 2020 02:58:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.36936 * 120.00038 * 2 1 4 4 H 1.08001 * 120.00286 * 202.33825 * 3 2 1 5 5 C 1.38814 * 119.99901 * 22.34940 * 3 2 1 6 6 N 1.31622 * 119.99912 * 11.34764 * 5 3 2 7 7 Si 1.86800 * 120.00065 * 191.35070 * 5 3 2 8 8 H 1.48505 * 109.47124 * 359.97438 * 7 5 3 9 9 H 1.48502 * 109.47006 * 119.99642 * 7 5 3 10 10 H 1.48497 * 109.47007 * 239.99661 * 7 5 3 11 11 C 1.46499 * 119.99773 * 180.02562 * 2 1 3 12 12 C 1.53004 * 109.46722 * 269.99724 * 11 2 1 13 13 N 1.46507 * 109.46925 * 179.97438 * 12 11 2 14 14 C 1.34770 * 119.99740 * 180.27589 * 13 12 11 15 15 O 1.21554 * 120.00240 * 359.72778 * 14 13 12 16 16 C 1.47842 * 120.00043 * 179.72976 * 14 13 12 17 17 C 1.39599 * 120.13438 * 359.71884 * 16 14 13 18 18 C 1.37991 * 119.89876 * 179.80092 * 17 16 14 19 19 C 1.38143 * 120.10820 * 0.45317 * 18 17 16 20 20 C 1.38760 * 120.26993 * 359.80288 * 19 18 17 21 21 C 1.37702 * 120.18528 * 359.96974 * 20 19 18 22 22 C 1.51115 * 107.25415 * 180.02562 * 20 19 18 23 23 O 1.43937 * 105.95414 * 17.71853 * 22 20 19 24 24 C 1.43924 * 104.96991 * 331.48333 * 23 22 20 25 25 H 1.08994 * 109.47357 * 274.20587 * 1 2 3 26 26 H 1.09004 * 109.47258 * 34.20856 * 1 2 3 27 27 H 1.08997 * 109.47320 * 154.19992 * 1 2 3 28 28 H 0.96997 * 119.99841 * 180.02562 * 6 5 3 29 29 H 1.09001 * 109.46913 * 150.00449 * 11 2 1 30 30 H 1.08997 * 109.47563 * 29.99420 * 11 2 1 31 31 H 1.09006 * 109.47094 * 60.00278 * 12 11 2 32 32 H 1.08997 * 109.47297 * 299.99834 * 12 11 2 33 33 H 0.96997 * 119.99870 * 0.02562 * 13 12 11 34 34 H 1.08004 * 120.05258 * 0.02562 * 17 16 14 35 35 H 1.08005 * 119.94946 * 180.23441 * 18 17 16 36 36 H 1.08001 * 120.09903 * 180.02562 * 21 20 19 37 37 H 1.08999 * 110.15408 * 136.83887 * 22 20 19 38 38 H 1.08996 * 110.15463 * 258.59454 * 22 20 19 39 39 H 1.09000 * 110.15462 * 147.64728 * 24 23 22 40 40 H 1.08997 * 110.15529 * 269.32329 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1689 1.2210 -0.3555 5 6 1.5338 2.3429 0.4571 6 7 0.3842 2.2690 1.0938 7 14 2.3365 4.0048 0.1687 8 1 3.6143 3.8168 -0.5644 9 1 1.4266 4.8615 -0.6333 10 1 2.6072 4.6571 1.4750 11 6 2.1974 -1.2687 -0.0006 12 6 2.4524 -1.7110 1.4418 13 7 3.1844 -2.9801 1.4413 14 6 3.5163 -3.5670 2.6082 15 8 3.2128 -3.0408 3.6611 16 6 4.2497 -4.8507 2.6078 17 6 4.5946 -5.4603 1.4002 18 6 5.2827 -6.6564 1.4054 19 6 5.6222 -7.2553 2.6031 20 6 5.2776 -6.6571 3.8067 21 6 4.5950 -5.4612 3.8151 22 6 5.7866 -7.5512 4.9136 23 8 6.7662 -8.4135 4.3066 24 6 6.3537 -8.5360 2.9332 25 1 -0.3634 0.0754 1.0248 26 1 -0.3634 0.8499 -0.5778 27 1 -0.3634 -0.9252 -0.4473 28 1 -0.0464 3.0775 1.4129 29 1 3.1499 -1.1382 -0.5143 30 1 1.6083 -2.0282 -0.5146 31 1 1.5000 -1.8415 1.9556 32 1 3.0415 -0.9516 1.9559 33 1 3.4269 -3.3997 0.6011 34 1 4.3265 -4.9947 0.4633 35 1 5.5533 -7.1269 0.4717 36 1 4.3278 -4.9966 4.7527 37 1 6.2485 -6.9518 5.6981 38 1 4.9686 -8.1428 5.3246 39 1 7.2251 -8.6477 2.2879 40 1 5.6880 -9.3910 2.8158 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001690983455.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:58:30 Heat of formation + Delta-G solvation = -19.882184 kcal Electronic energy + Delta-G solvation = -21986.890741 eV Core-core repulsion = 18574.758192 eV Total energy + Delta-G solvation = -3412.132549 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.06983 -39.48434 -37.28820 -36.06593 -34.26397 -31.99781 -31.90121 -31.15321 -28.47702 -28.04710 -25.92605 -25.35468 -23.44169 -22.52653 -21.97536 -20.69270 -20.07116 -17.81610 -16.81566 -16.74610 -16.69166 -16.23065 -15.64608 -15.10116 -14.77233 -14.70043 -14.43660 -13.86664 -13.77117 -13.74042 -13.33034 -13.02629 -12.95389 -12.58001 -12.31573 -12.23967 -12.05080 -11.27379 -11.22934 -10.90322 -10.87809 -10.62319 -10.45749 -10.31017 -10.00267 -9.96077 -9.76546 -9.25908 -8.98102 -8.66954 -8.58248 -6.85304 -5.76903 -3.24391 0.51360 0.97007 2.75154 3.27553 3.37359 3.43738 3.45770 3.52819 3.64627 3.83363 4.23606 4.46921 4.52392 4.72814 4.85372 4.93015 4.99232 5.02313 5.15979 5.33093 5.37369 5.40798 5.59662 5.62667 5.83157 5.86667 5.89011 5.94138 6.03997 6.23186 6.28079 6.47339 6.61970 6.67967 6.70274 6.92950 7.34348 7.69064 7.72319 7.78167 8.33588 8.40261 9.18390 9.80250 10.28161 11.28167 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.035402 B = 0.002648 C = 0.002615 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 790.718429 B =10570.453937 C =10706.374586 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.162 3.838 2 N -0.596 5.596 3 C -0.260 4.260 4 H 0.071 0.929 5 C 0.003 3.997 6 N -0.905 5.905 7 Si 0.907 3.093 8 H -0.278 1.278 9 H -0.289 1.289 10 H -0.289 1.289 11 C 0.144 3.856 12 C 0.093 3.907 13 N -0.717 5.717 14 C 0.549 3.451 15 O -0.536 6.536 16 C -0.119 4.119 17 C -0.081 4.081 18 C -0.100 4.100 19 C -0.115 4.115 20 C -0.142 4.142 21 C -0.037 4.037 22 C 0.092 3.908 23 O -0.361 6.361 24 C 0.089 3.911 25 H 0.030 0.970 26 H 0.047 0.953 27 H -0.002 1.002 28 H 0.253 0.747 29 H 0.049 0.951 30 H 0.042 0.958 31 H 0.062 0.938 32 H 0.071 0.929 33 H 0.394 0.606 34 H 0.135 0.865 35 H 0.132 0.868 36 H 0.140 0.860 37 H 0.101 0.899 38 H 0.080 0.920 39 H 0.100 0.900 40 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.474 -21.981 0.590 23.943 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 N -0.319 5.319 3 C -0.390 4.390 4 H 0.089 0.911 5 C -0.196 4.196 6 N -0.550 5.550 7 Si 0.737 3.263 8 H -0.203 1.203 9 H -0.215 1.215 10 H -0.216 1.216 11 C 0.015 3.985 12 C -0.032 4.032 13 N -0.368 5.368 14 C 0.335 3.665 15 O -0.414 6.414 16 C -0.122 4.122 17 C -0.100 4.100 18 C -0.118 4.118 19 C -0.116 4.116 20 C -0.142 4.142 21 C -0.056 4.056 22 C 0.016 3.984 23 O -0.280 6.280 24 C 0.013 3.987 25 H 0.048 0.952 26 H 0.066 0.934 27 H 0.016 0.984 28 H 0.064 0.936 29 H 0.067 0.933 30 H 0.061 0.939 31 H 0.080 0.920 32 H 0.089 0.911 33 H 0.229 0.771 34 H 0.153 0.847 35 H 0.150 0.850 36 H 0.158 0.842 37 H 0.119 0.881 38 H 0.098 0.902 39 H 0.118 0.882 40 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 9.287 -21.493 1.481 23.460 hybrid contribution 0.227 0.913 -0.499 1.064 sum 9.515 -20.580 0.983 22.694 Atomic orbital electron populations 1.20856 0.82108 0.95784 0.99527 1.43937 1.02093 1.00329 1.85510 1.19264 0.98161 0.85178 1.36377 0.91139 1.25081 0.97648 0.98743 0.98085 1.70079 1.17766 1.27174 1.39964 0.86145 0.78643 0.84024 0.77482 1.20267 1.21543 1.21619 1.21001 0.96408 0.88996 0.92078 1.22608 0.95773 0.82463 1.02353 1.46129 1.57934 1.25180 1.07577 1.18197 0.79587 0.84219 0.84512 1.90794 1.54600 1.64846 1.31151 1.20088 1.01906 0.96371 0.93880 1.21345 0.96336 0.94830 0.97488 1.20316 0.99235 0.95370 0.96888 1.21271 0.99117 0.96938 0.94241 1.20975 1.00862 0.96301 0.96062 1.20473 0.94284 0.92278 0.98523 1.21769 0.91995 0.90583 0.94064 1.89089 1.48815 1.68325 1.21724 1.21799 0.99021 0.93908 0.83956 0.95183 0.93376 0.98360 0.93643 0.93273 0.93943 0.91957 0.91068 0.77148 0.84715 0.84972 0.84214 0.88139 0.90212 0.88238 0.90204 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 3.95 9.01 59.85 0.54 4.49 16 2 N -0.60 -14.77 2.92 -181.12 -0.53 -15.30 16 3 C -0.26 -7.08 9.67 -15.06 -0.15 -7.23 16 4 H 0.07 1.87 7.84 -52.49 -0.41 1.46 16 5 C 0.00 0.09 5.13 -17.43 -0.09 0.00 16 6 N -0.91 -26.43 10.59 55.49 0.59 -25.84 16 7 Si 0.91 21.84 29.57 -169.99 -5.03 16.81 16 8 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 9 H -0.29 -6.95 7.11 56.52 0.40 -6.54 16 10 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 11 C 0.14 2.78 5.82 -4.04 -0.02 2.76 16 12 C 0.09 1.80 6.00 -4.04 -0.02 1.78 16 13 N -0.72 -10.79 5.51 -61.24 -0.34 -11.13 16 14 C 0.55 8.91 7.77 -12.33 -0.10 8.82 16 15 O -0.54 -10.99 16.35 5.32 0.09 -10.91 16 16 C -0.12 -1.51 5.88 -104.94 -0.62 -2.13 16 17 C -0.08 -0.78 9.54 -39.16 -0.37 -1.15 16 18 C -0.10 -0.83 10.03 -39.71 -0.40 -1.23 16 19 C -0.12 -1.05 6.33 -104.25 -0.66 -1.71 16 20 C -0.14 -1.45 6.31 -104.42 -0.66 -2.11 16 21 C -0.04 -0.44 9.59 -39.26 -0.38 -0.82 16 22 C 0.09 0.78 7.63 36.21 0.28 1.06 16 23 O -0.36 -3.49 11.72 -35.23 -0.41 -3.90 16 24 C 0.09 0.67 7.63 36.22 0.28 0.94 16 25 H 0.03 0.80 7.42 -51.93 -0.39 0.41 16 26 H 0.05 1.26 7.19 -51.93 -0.37 0.88 16 27 H 0.00 -0.04 7.84 -51.93 -0.41 -0.45 16 28 H 0.25 7.16 8.31 -40.82 -0.34 6.82 16 29 H 0.05 0.90 8.03 -51.93 -0.42 0.48 16 30 H 0.04 0.72 7.86 -51.93 -0.41 0.31 16 31 H 0.06 1.33 8.14 -51.93 -0.42 0.91 16 32 H 0.07 1.60 8.14 -51.93 -0.42 1.18 16 33 H 0.39 4.46 6.51 -40.82 -0.27 4.20 16 34 H 0.14 0.97 6.40 -52.48 -0.34 0.64 16 35 H 0.13 0.72 8.06 -52.48 -0.42 0.30 16 36 H 0.14 1.71 7.65 -52.49 -0.40 1.31 16 37 H 0.10 0.75 8.14 -51.93 -0.42 0.33 16 38 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 39 H 0.10 0.58 8.14 -51.93 -0.42 0.15 16 40 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 LS Contribution 336.28 15.07 5.07 5.07 Total: -1.00 -33.47 336.28 -8.43 -41.90 By element: Atomic # 1 Polarization: 5.32 SS G_CDS: -5.50 Total: -0.18 kcal Atomic # 6 Polarization: 5.85 SS G_CDS: -2.37 Total: 3.48 kcal Atomic # 7 Polarization: -51.99 SS G_CDS: -0.28 Total: -52.27 kcal Atomic # 8 Polarization: -14.48 SS G_CDS: -0.33 Total: -14.81 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.03 Total: 16.81 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -33.47 -8.43 -41.90 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690983455.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.021 kcal (2) G-P(sol) polarization free energy of solvation -33.468 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.447 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.435 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.903 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.882 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds