Wall clock time and date at job start Tue Mar 31 2020 02:58:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.36936 * 120.00038 * 2 1 4 4 H 1.08001 * 120.00286 * 202.33825 * 3 2 1 5 5 C 1.38814 * 119.99901 * 22.34940 * 3 2 1 6 6 N 1.31622 * 119.99912 * 11.34764 * 5 3 2 7 7 Si 1.86800 * 120.00065 * 191.35070 * 5 3 2 8 8 H 1.48505 * 109.47124 * 359.97438 * 7 5 3 9 9 H 1.48502 * 109.47006 * 119.99642 * 7 5 3 10 10 H 1.48497 * 109.47007 * 239.99661 * 7 5 3 11 11 C 1.46499 * 119.99773 * 180.02562 * 2 1 3 12 12 C 1.53004 * 109.46722 * 269.99724 * 11 2 1 13 13 N 1.46507 * 109.46925 * 179.97438 * 12 11 2 14 14 C 1.34770 * 119.99740 * 180.27589 * 13 12 11 15 15 O 1.21554 * 120.00240 * 359.72778 * 14 13 12 16 16 C 1.47842 * 120.00043 * 179.72976 * 14 13 12 17 17 C 1.39599 * 120.13438 * 359.71884 * 16 14 13 18 18 C 1.37991 * 119.89876 * 179.80092 * 17 16 14 19 19 C 1.38143 * 120.10820 * 0.45317 * 18 17 16 20 20 C 1.38760 * 120.26993 * 359.80288 * 19 18 17 21 21 C 1.37702 * 120.18528 * 359.96974 * 20 19 18 22 22 C 1.51115 * 107.25415 * 180.02562 * 20 19 18 23 23 O 1.43937 * 105.95414 * 17.71853 * 22 20 19 24 24 C 1.43924 * 104.96991 * 331.48333 * 23 22 20 25 25 H 1.08994 * 109.47357 * 274.20587 * 1 2 3 26 26 H 1.09004 * 109.47258 * 34.20856 * 1 2 3 27 27 H 1.08997 * 109.47320 * 154.19992 * 1 2 3 28 28 H 0.96997 * 119.99841 * 180.02562 * 6 5 3 29 29 H 1.09001 * 109.46913 * 150.00449 * 11 2 1 30 30 H 1.08997 * 109.47563 * 29.99420 * 11 2 1 31 31 H 1.09006 * 109.47094 * 60.00278 * 12 11 2 32 32 H 1.08997 * 109.47297 * 299.99834 * 12 11 2 33 33 H 0.96997 * 119.99870 * 0.02562 * 13 12 11 34 34 H 1.08004 * 120.05258 * 0.02562 * 17 16 14 35 35 H 1.08005 * 119.94946 * 180.23441 * 18 17 16 36 36 H 1.08001 * 120.09903 * 180.02562 * 21 20 19 37 37 H 1.08999 * 110.15408 * 136.83887 * 22 20 19 38 38 H 1.08996 * 110.15463 * 258.59454 * 22 20 19 39 39 H 1.09000 * 110.15462 * 147.64728 * 24 23 22 40 40 H 1.08997 * 110.15529 * 269.32329 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1689 1.2210 -0.3555 5 6 1.5338 2.3429 0.4571 6 7 0.3842 2.2690 1.0938 7 14 2.3365 4.0048 0.1687 8 1 3.6143 3.8168 -0.5644 9 1 1.4266 4.8615 -0.6333 10 1 2.6072 4.6571 1.4750 11 6 2.1974 -1.2687 -0.0006 12 6 2.4524 -1.7110 1.4418 13 7 3.1844 -2.9801 1.4413 14 6 3.5163 -3.5670 2.6082 15 8 3.2128 -3.0408 3.6611 16 6 4.2497 -4.8507 2.6078 17 6 4.5946 -5.4603 1.4002 18 6 5.2827 -6.6564 1.4054 19 6 5.6222 -7.2553 2.6031 20 6 5.2776 -6.6571 3.8067 21 6 4.5950 -5.4612 3.8151 22 6 5.7866 -7.5512 4.9136 23 8 6.7662 -8.4135 4.3066 24 6 6.3537 -8.5360 2.9332 25 1 -0.3634 0.0754 1.0248 26 1 -0.3634 0.8499 -0.5778 27 1 -0.3634 -0.9252 -0.4473 28 1 -0.0464 3.0775 1.4129 29 1 3.1499 -1.1382 -0.5143 30 1 1.6083 -2.0282 -0.5146 31 1 1.5000 -1.8415 1.9556 32 1 3.0415 -0.9516 1.9559 33 1 3.4269 -3.3997 0.6011 34 1 4.3265 -4.9947 0.4633 35 1 5.5533 -7.1269 0.4717 36 1 4.3278 -4.9966 4.7527 37 1 6.2485 -6.9518 5.6981 38 1 4.9686 -8.1428 5.3246 39 1 7.2251 -8.6477 2.2879 40 1 5.6880 -9.3910 2.8158 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001690983455.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:58:29 Heat of formation + Delta-G solvation = -43.001884 kcal Electronic energy + Delta-G solvation = -21987.893287 eV Core-core repulsion = 18574.758192 eV Total energy + Delta-G solvation = -3413.135095 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.85738 -40.66850 -38.19060 -37.78984 -35.85013 -33.44402 -32.67475 -32.50418 -29.87456 -28.91307 -27.94366 -26.40270 -24.83411 -23.62733 -22.71672 -22.40699 -21.28108 -18.96845 -18.68025 -17.59737 -17.45810 -17.07191 -16.86843 -16.60649 -16.51269 -15.72382 -15.48014 -15.34191 -15.02088 -14.82110 -14.51451 -14.33005 -14.20526 -13.81078 -13.56821 -13.21555 -13.11648 -12.82831 -12.76278 -12.62755 -12.49531 -12.06881 -12.03369 -11.99073 -11.77052 -11.18054 -11.13591 -10.68843 -10.23032 -9.99928 -9.64578 -8.88131 -7.86305 -5.35976 -0.34631 0.21327 1.45516 1.46792 1.57118 1.70227 2.03106 2.50723 2.68587 2.91327 3.11321 3.29427 3.55362 3.61279 3.81622 3.90053 4.13758 4.21521 4.22732 4.35386 4.40566 4.42339 4.55611 4.64166 4.72075 4.73541 4.84104 4.88899 5.04159 5.07178 5.15165 5.18969 5.23580 5.31755 5.39198 5.61250 5.62206 5.71867 5.75537 6.29821 6.50225 7.11168 7.16148 7.82157 8.24265 9.17579 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.035402 B = 0.002648 C = 0.002615 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 790.718429 B =10570.453937 C =10706.374586 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.174 3.826 2 N -0.615 5.615 3 C -0.264 4.264 4 H 0.078 0.922 5 C -0.057 4.057 6 N -0.940 5.940 7 Si 0.971 3.029 8 H -0.262 1.262 9 H -0.289 1.289 10 H -0.297 1.297 11 C 0.147 3.853 12 C 0.114 3.886 13 N -0.701 5.701 14 C 0.547 3.453 15 O -0.591 6.591 16 C -0.143 4.143 17 C -0.073 4.073 18 C -0.093 4.093 19 C -0.110 4.110 20 C -0.153 4.153 21 C -0.053 4.053 22 C 0.091 3.909 23 O -0.379 6.379 24 C 0.087 3.913 25 H -0.002 1.002 26 H 0.022 0.978 27 H 0.037 0.963 28 H 0.248 0.752 29 H 0.067 0.933 30 H 0.078 0.922 31 H 0.035 0.965 32 H 0.031 0.969 33 H 0.416 0.584 34 H 0.162 0.838 35 H 0.172 0.828 36 H 0.122 0.878 37 H 0.105 0.895 38 H 0.094 0.906 39 H 0.121 0.879 40 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.322 -24.554 -1.741 27.094 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 N -0.338 5.338 3 C -0.395 4.395 4 H 0.095 0.905 5 C -0.252 4.252 6 N -0.586 5.586 7 Si 0.799 3.201 8 H -0.186 1.186 9 H -0.215 1.215 10 H -0.224 1.224 11 C 0.019 3.981 12 C -0.013 4.013 13 N -0.353 5.353 14 C 0.336 3.664 15 O -0.473 6.473 16 C -0.146 4.146 17 C -0.091 4.091 18 C -0.110 4.110 19 C -0.111 4.111 20 C -0.153 4.153 21 C -0.073 4.073 22 C 0.015 3.985 23 O -0.298 6.298 24 C 0.011 3.989 25 H 0.016 0.984 26 H 0.041 0.959 27 H 0.056 0.944 28 H 0.057 0.943 29 H 0.086 0.914 30 H 0.096 0.904 31 H 0.054 0.946 32 H 0.050 0.950 33 H 0.255 0.745 34 H 0.179 0.821 35 H 0.189 0.811 36 H 0.141 0.859 37 H 0.123 0.877 38 H 0.112 0.888 39 H 0.139 0.861 40 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 11.175 -24.123 -0.902 26.601 hybrid contribution -0.281 1.537 0.220 1.577 sum 10.895 -22.587 -0.682 25.086 Atomic orbital electron populations 1.20614 0.82414 0.96585 0.97499 1.44192 1.02400 1.01624 1.85539 1.19641 0.98372 0.86336 1.35112 0.90467 1.25882 0.98455 1.02217 0.98599 1.70256 1.19305 1.27496 1.41590 0.85150 0.78274 0.79820 0.76884 1.18617 1.21545 1.22432 1.21160 0.97340 0.87651 0.91905 1.22021 0.94203 0.83390 1.01667 1.45773 1.57207 1.23687 1.08639 1.18802 0.78819 0.85103 0.83678 1.90763 1.56842 1.66581 1.33080 1.19806 1.03869 0.95276 0.95617 1.21636 0.95362 0.95063 0.97036 1.20725 0.97689 0.94464 0.98160 1.21689 0.98029 0.97305 0.94073 1.21122 1.00698 0.95841 0.97683 1.20423 0.95539 0.93350 0.97942 1.21854 0.92353 0.90544 0.93724 1.89073 1.49328 1.68390 1.22972 1.22052 1.00180 0.93478 0.83194 0.98379 0.95897 0.94425 0.94293 0.91427 0.90399 0.94633 0.95022 0.74498 0.82056 0.81070 0.85950 0.87744 0.88816 0.86092 0.88130 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.17 8.54 9.01 127.77 1.15 9.69 16 2 N -0.61 -30.22 2.92 -726.95 -2.13 -32.35 16 3 C -0.26 -14.37 9.67 84.03 0.81 -13.55 16 4 H 0.08 4.01 7.84 -2.91 -0.02 3.99 16 5 C -0.06 -3.20 5.13 84.86 0.44 -2.76 16 6 N -0.94 -56.59 10.59 21.65 0.23 -56.36 16 7 Si 0.97 45.41 29.57 68.60 2.03 47.44 16 8 H -0.26 -11.45 7.11 99.48 0.71 -10.74 16 9 H -0.29 -13.39 7.11 99.48 0.71 -12.68 16 10 H -0.30 -14.15 7.11 99.48 0.71 -13.44 16 11 C 0.15 5.41 5.82 86.38 0.50 5.91 16 12 C 0.11 4.45 6.00 86.38 0.52 4.96 16 13 N -0.70 -20.47 5.51 -465.96 -2.57 -23.04 16 14 C 0.55 18.06 7.77 86.79 0.67 18.74 16 15 O -0.59 -25.69 16.35 -3.89 -0.06 -25.75 16 16 C -0.14 -3.51 5.88 -20.07 -0.12 -3.63 16 17 C -0.07 -1.16 9.54 22.54 0.22 -0.95 16 18 C -0.09 -1.14 10.03 22.19 0.22 -0.92 16 19 C -0.11 -1.66 6.33 -19.62 -0.12 -1.78 16 20 C -0.15 -2.95 6.31 -19.73 -0.12 -3.07 16 21 C -0.05 -1.30 9.59 22.48 0.22 -1.09 16 22 C 0.09 1.44 7.63 71.37 0.54 1.98 16 23 O -0.38 -6.44 11.72 -148.98 -1.75 -8.18 16 24 C 0.09 0.98 7.63 71.37 0.54 1.52 16 25 H 0.00 -0.12 7.42 -2.39 -0.02 -0.14 16 26 H 0.02 1.20 7.19 -2.39 -0.02 1.18 16 27 H 0.04 1.52 7.84 -2.39 -0.02 1.50 16 28 H 0.25 14.51 8.31 -92.71 -0.77 13.74 16 29 H 0.07 2.28 8.03 -2.39 -0.02 2.26 16 30 H 0.08 2.36 7.86 -2.39 -0.02 2.34 16 31 H 0.04 1.57 8.14 -2.38 -0.02 1.55 16 32 H 0.03 1.48 8.14 -2.39 -0.02 1.46 16 33 H 0.42 8.23 6.51 -92.71 -0.60 7.63 16 34 H 0.16 1.60 6.40 -2.91 -0.02 1.58 16 35 H 0.17 0.81 8.06 -2.91 -0.02 0.79 16 36 H 0.12 3.28 7.65 -2.91 -0.02 3.26 16 37 H 0.10 1.51 8.14 -2.39 -0.02 1.49 16 38 H 0.09 1.19 8.14 -2.39 -0.02 1.17 16 39 H 0.12 0.87 8.14 -2.39 -0.02 0.85 16 40 H 0.10 0.76 8.14 -2.39 -0.02 0.75 16 Total: -1.00 -76.34 336.28 1.68 -74.66 By element: Atomic # 1 Polarization: 8.08 SS G_CDS: 0.45 Total: 8.53 kcal Atomic # 6 Polarization: 9.58 SS G_CDS: 5.47 Total: 15.05 kcal Atomic # 7 Polarization: -107.29 SS G_CDS: -4.46 Total: -111.75 kcal Atomic # 8 Polarization: -32.12 SS G_CDS: -1.81 Total: -33.93 kcal Atomic # 14 Polarization: 45.41 SS G_CDS: 2.03 Total: 47.44 kcal Total: -76.34 1.68 -74.66 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690983455.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.657 kcal (2) G-P(sol) polarization free energy of solvation -76.337 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.680 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.678 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.659 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.002 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds