Wall clock time and date at job start Tue Mar 31 2020 02:43:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50704 * 120.00188 * 2 1 4 4 N 1.46494 * 109.47336 * 125.00315 * 3 2 1 5 5 C 1.46760 * 124.34799 * 270.00256 * 4 3 2 6 6 C 1.54476 * 105.47393 * 196.99276 * 5 4 3 7 7 C 1.54629 * 101.76859 * 334.58287 * 6 5 4 8 8 H 1.09000 * 110.59894 * 266.06967 * 7 6 5 9 9 N 1.46499 * 110.49011 * 143.47407 * 7 6 5 10 10 C 1.39989 * 119.99858 * 159.04984 * 9 7 6 11 11 C 1.40421 * 125.97624 * 359.44459 * 10 9 7 12 12 C 1.35256 * 107.86542 * 179.82853 * 11 10 9 13 13 N 1.34959 * 107.85805 * 0.42633 * 12 11 10 14 14 C 1.46494 * 125.97300 * 179.72937 * 13 12 11 15 15 C 1.50700 * 109.47219 * 124.97317 * 14 13 12 16 16 H 1.08002 * 120.00023 * 0.02562 * 15 14 13 17 17 C 1.37882 * 120.00189 * 180.02562 * 15 14 13 18 18 N 1.31510 * 120.00156 * 180.02562 * 17 15 14 19 19 Si 1.86797 * 119.99772 * 359.97438 * 17 15 14 20 20 H 1.48500 * 109.46933 * 90.00458 * 19 17 15 21 21 H 1.48499 * 109.47095 * 210.00242 * 19 17 15 22 22 H 1.48499 * 109.47431 * 330.00517 * 19 17 15 23 23 N 1.31226 * 125.97459 * 179.74821 * 10 9 7 24 24 C 1.34416 * 124.35265 * 89.96994 * 4 3 2 25 25 O 1.21285 * 124.94297 * 359.58725 * 24 4 3 26 26 H 1.07997 * 120.00056 * 180.02562 * 1 2 3 27 27 H 1.08000 * 119.99833 * 359.97438 * 1 2 3 28 28 H 1.08000 * 119.99833 * 180.02562 * 2 1 3 29 29 H 1.08995 * 109.46640 * 5.00104 * 3 2 1 30 30 H 1.09001 * 109.46775 * 245.00436 * 3 2 1 31 31 H 1.09005 * 110.24921 * 315.99083 * 5 4 3 32 32 H 1.08994 * 110.25025 * 77.90463 * 5 4 3 33 33 H 1.09005 * 110.97571 * 216.46370 * 6 5 4 34 34 H 1.09009 * 110.97348 * 92.70191 * 6 5 4 35 35 H 0.97001 * 119.99790 * 338.76924 * 9 7 6 36 36 H 1.08005 * 126.06869 * 359.95713 * 11 10 9 37 37 H 1.07998 * 126.07121 * 180.13460 * 12 11 10 38 38 H 1.09005 * 109.47500 * 244.97278 * 14 13 12 39 39 H 1.09003 * 109.47333 * 4.97336 * 14 13 12 40 40 H 0.97002 * 120.00097 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9938 1.3319 1.1313 5 6 2.6601 1.8433 2.4659 6 6 4.0158 2.0762 3.1688 7 6 4.9329 1.0788 2.4238 8 1 4.9847 0.1313 2.9602 9 7 6.2736 1.6440 2.2531 10 6 7.3646 0.7991 2.0175 11 6 7.3197 -0.6018 1.9321 12 6 8.5755 -1.0434 1.6923 13 7 9.3889 0.0321 1.6370 14 6 10.8346 0.0064 1.4020 15 6 11.1686 0.8908 0.2284 16 1 10.3826 1.4195 -0.2903 17 6 12.4777 1.0250 -0.1832 18 7 12.7692 1.7972 -1.2070 19 14 13.8373 0.1112 0.7145 20 1 14.0371 -1.2197 0.0868 21 1 15.0975 0.8922 0.6308 22 1 13.4581 -0.0655 2.1393 23 7 8.6091 1.1773 1.8435 24 6 4.2625 0.8907 1.0807 25 8 4.7926 0.4111 0.1009 26 1 -0.5400 -0.9353 0.0004 27 1 -0.5400 0.9353 0.0004 28 1 1.8500 -0.9353 -0.0004 29 1 1.3586 2.1316 0.0896 30 1 2.6213 1.4026 -0.9314 31 1 2.1116 2.7817 2.3840 32 1 2.0705 1.1090 3.0146 33 1 3.9528 1.8310 4.2291 34 1 4.3579 3.1015 3.0268 35 1 6.4047 2.6040 2.2992 36 1 6.4384 -1.2173 2.0370 37 1 8.8749 -2.0740 1.5716 38 1 11.3535 0.3690 2.2895 39 1 11.1500 -1.0149 1.1887 40 1 13.6902 1.8919 -1.4963 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000281313159.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:43:39 Heat of formation + Delta-G solvation = 87.863704 kcal Electronic energy + Delta-G solvation = -22405.543507 eV Core-core repulsion = 19030.375921 eV Total energy + Delta-G solvation = -3375.167586 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.148 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.71052 -40.00987 -36.49306 -35.97309 -34.30209 -33.12632 -31.49128 -30.30443 -29.18425 -27.23569 -26.73636 -25.79950 -22.54665 -22.15097 -20.77014 -20.00305 -19.72858 -19.11908 -17.13542 -16.92837 -16.73721 -16.20855 -15.89484 -15.34197 -14.87893 -14.40949 -14.25079 -13.93193 -13.67301 -13.58566 -13.23823 -13.03248 -12.66364 -12.45592 -12.35798 -12.15131 -12.09881 -11.98204 -11.62033 -11.31836 -11.03520 -10.66358 -10.57475 -10.07180 -9.83517 -9.70204 -9.46422 -9.16694 -8.90079 -8.67232 -7.87740 -7.00507 -6.13772 -4.14857 1.81284 2.49767 2.91104 2.96682 3.20462 3.25228 3.28824 3.33845 3.77054 4.08311 4.25598 4.31118 4.32209 4.57162 4.66806 4.72502 4.80012 5.12330 5.13795 5.15757 5.24782 5.39898 5.51992 5.53780 5.58346 5.65086 5.93136 6.16711 6.26511 6.31440 6.48118 6.50974 6.52054 6.74307 6.97408 7.02185 7.40026 7.61934 7.99192 8.13849 8.21766 8.46807 8.86638 8.99797 9.41793 10.99305 Molecular weight = 290.15amu Principal moments of inertia in cm(-1) A = 0.030031 B = 0.003087 C = 0.003009 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 932.145392 B = 9067.072211 C = 9303.545906 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.167 4.167 3 C 0.152 3.848 4 N -0.624 5.624 5 C 0.108 3.892 6 C -0.137 4.137 7 C 0.147 3.853 8 H 0.112 0.888 9 N -0.707 5.707 10 C 0.311 3.689 11 C -0.313 4.313 12 C 0.064 3.936 13 N -0.328 5.328 14 C 0.234 3.766 15 C -0.530 4.530 16 H 0.085 0.915 17 C 0.074 3.926 18 N -0.890 5.890 19 Si 0.873 3.127 20 H -0.272 1.272 21 H -0.281 1.281 22 H -0.264 1.264 23 N -0.323 5.323 24 C 0.494 3.506 25 O -0.499 6.499 26 H 0.099 0.901 27 H 0.097 0.903 28 H 0.111 0.889 29 H 0.081 0.919 30 H 0.091 0.909 31 H 0.079 0.921 32 H 0.073 0.927 33 H 0.099 0.901 34 H 0.090 0.910 35 H 0.403 0.597 36 H 0.128 0.872 37 H 0.163 0.837 38 H 0.039 0.961 39 H 0.045 0.955 40 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.380 -2.298 10.181 26.520 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.186 4.186 3 C 0.030 3.970 4 N -0.360 5.360 5 C -0.016 4.016 6 C -0.176 4.176 7 C 0.036 3.964 8 H 0.130 0.870 9 N -0.349 5.349 10 C 0.054 3.946 11 C -0.346 4.346 12 C -0.087 4.087 13 N -0.107 5.107 14 C 0.115 3.885 15 C -0.568 4.568 16 H 0.104 0.896 17 C -0.129 4.129 18 N -0.528 5.528 19 Si 0.699 3.301 20 H -0.198 1.198 21 H -0.206 1.206 22 H -0.189 1.189 23 N -0.154 5.154 24 C 0.278 3.722 25 O -0.371 6.371 26 H 0.117 0.883 27 H 0.115 0.885 28 H 0.129 0.871 29 H 0.100 0.900 30 H 0.109 0.891 31 H 0.097 0.903 32 H 0.091 0.909 33 H 0.117 0.883 34 H 0.108 0.892 35 H 0.239 0.761 36 H 0.146 0.854 37 H 0.180 0.820 38 H 0.057 0.943 39 H 0.063 0.937 40 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -23.032 -1.662 9.384 24.926 hybrid contribution 0.139 -0.867 0.188 0.898 sum -22.893 -2.529 9.572 24.942 Atomic orbital electron populations 1.23848 0.95627 1.01986 1.00676 1.23395 0.96148 0.99371 0.99688 1.20448 0.91668 0.95123 0.89724 1.48312 1.12588 1.63682 1.11455 1.22025 0.97127 0.99676 0.82744 1.22895 0.93476 1.00522 1.00658 1.21262 0.82791 0.99254 0.93110 0.86995 1.42970 1.01380 1.06957 1.83614 1.19070 0.87808 0.89523 0.98162 1.20658 0.97367 0.92886 1.23687 1.22286 0.90772 0.94067 1.01529 1.48484 1.08370 1.01901 1.51989 1.19943 0.71496 0.98563 0.98490 1.21157 0.94921 1.28029 1.12676 0.89650 1.24847 0.98179 0.95054 0.94827 1.69884 1.19472 1.37766 1.25673 0.86904 0.82169 0.80272 0.80727 1.19801 1.20634 1.18880 1.77454 1.00227 1.08055 1.29665 1.21893 0.81532 0.77259 0.91515 1.90781 1.67376 1.42428 1.36509 0.88300 0.88474 0.87123 0.90049 0.89123 0.90298 0.90918 0.88280 0.89170 0.76140 0.85391 0.81965 0.94298 0.93700 0.92311 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.21 14.32 29.01 0.42 -0.79 16 2 C -0.17 -1.43 9.85 -36.02 -0.35 -1.79 16 3 C 0.15 1.37 6.37 -5.20 -0.03 1.34 16 4 N -0.62 -6.27 2.92 -173.79 -0.51 -6.77 16 5 C 0.11 0.66 7.35 -3.13 -0.02 0.64 16 6 C -0.14 -0.93 6.86 -25.10 -0.17 -1.10 16 7 C 0.15 1.73 3.22 -67.94 -0.22 1.51 16 8 H 0.11 1.24 7.26 -51.93 -0.38 0.87 16 9 N -0.71 -11.07 5.36 -53.58 -0.29 -11.36 16 10 C 0.31 6.35 8.16 -154.55 -1.26 5.09 16 11 C -0.31 -6.03 9.94 -39.82 -0.40 -6.43 16 12 C 0.06 1.29 11.44 -17.24 -0.20 1.09 16 13 N -0.33 -7.83 3.67 -62.56 -0.23 -8.06 16 14 C 0.23 5.84 5.33 -5.20 -0.03 5.82 16 15 C -0.53 -15.71 9.79 -34.44 -0.34 -16.05 16 16 H 0.09 2.90 8.06 -52.49 -0.42 2.47 16 17 C 0.07 2.16 5.47 -17.82 -0.10 2.07 16 18 N -0.89 -27.71 13.96 55.43 0.77 -26.93 16 19 Si 0.87 20.86 27.47 -169.99 -4.67 16.19 16 20 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 21 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 22 H -0.26 -5.97 6.54 56.52 0.37 -5.60 16 23 N -0.32 -7.86 12.42 31.41 0.39 -7.47 16 24 C 0.49 6.97 7.66 -10.86 -0.08 6.89 16 25 O -0.50 -9.71 17.59 5.55 0.10 -9.61 16 26 H 0.10 0.58 8.06 -52.49 -0.42 0.15 16 27 H 0.10 0.50 7.84 -52.49 -0.41 0.09 16 28 H 0.11 1.11 8.06 -52.49 -0.42 0.69 16 29 H 0.08 0.52 7.79 -51.93 -0.40 0.11 16 30 H 0.09 0.99 7.93 -51.93 -0.41 0.58 16 31 H 0.08 0.35 8.14 -51.93 -0.42 -0.08 16 32 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 33 H 0.10 0.46 8.14 -51.93 -0.42 0.04 16 34 H 0.09 0.58 7.80 -51.92 -0.40 0.18 16 35 H 0.40 5.85 8.51 -40.82 -0.35 5.50 16 36 H 0.13 2.15 7.48 -52.48 -0.39 1.76 16 37 H 0.16 2.60 8.06 -52.49 -0.42 2.18 16 38 H 0.04 0.96 7.20 -51.93 -0.37 0.59 16 39 H 0.05 1.02 7.50 -51.93 -0.39 0.63 16 40 H 0.27 7.67 8.31 -40.82 -0.34 7.33 16 LS Contribution 344.17 15.07 5.19 5.19 Total: -1.00 -37.64 344.17 -7.67 -45.31 By element: Atomic # 1 Polarization: 10.89 SS G_CDS: -5.64 Total: 5.25 kcal Atomic # 6 Polarization: 1.07 SS G_CDS: -2.79 Total: -1.72 kcal Atomic # 7 Polarization: -60.74 SS G_CDS: 0.14 Total: -60.60 kcal Atomic # 8 Polarization: -9.71 SS G_CDS: 0.10 Total: -9.61 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -4.67 Total: 16.19 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -37.64 -7.67 -45.31 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281313159.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.176 kcal (2) G-P(sol) polarization free energy of solvation -37.642 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 95.534 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.670 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.312 kcal (6) G-S(sol) free energy of system = (1) + (5) 87.864 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds