Wall clock time and date at job start Tue Mar 31 2020 03:04:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09007 * 109.56090 * 2 1 4 4 C 1.53164 * 109.64833 * 120.26489 * 2 1 3 5 5 C 1.52965 * 109.15258 * 190.41048 * 4 2 1 6 6 C 1.52419 * 108.80371 * 308.89702 * 5 4 2 7 7 C 1.33837 * 123.10552 * 17.52573 * 6 5 4 8 8 S 1.75645 * 110.87537 * 179.89902 * 7 6 5 9 9 C 1.75850 * 91.77323 * 0.04686 * 8 7 6 10 10 N 1.34773 * 130.58609 * 179.97438 * 9 8 7 11 11 N 1.28247 * 122.04828 * 180.02562 * 10 9 8 12 12 N 1.39885 * 121.47754 * 359.97438 * 11 10 9 13 13 C 1.36908 * 120.08146 * 180.02562 * 12 11 10 14 14 H 1.08004 * 120.00024 * 179.97438 * 13 12 11 15 15 C 1.39142 * 120.00378 * 359.97438 * 13 12 11 16 16 N 1.31187 * 119.99694 * 0.02562 * 15 13 12 17 17 Si 1.86802 * 119.99829 * 179.97438 * 15 13 12 18 18 H 1.48502 * 109.46972 * 60.00629 * 17 15 13 19 19 H 1.48507 * 109.46713 * 180.02562 * 17 15 13 20 20 H 1.48498 * 109.47417 * 300.00212 * 17 15 13 21 21 C 1.34795 * 119.83025 * 359.97438 * 12 11 10 22 22 O 1.21845 * 120.74039 * 179.97438 * 21 12 11 23 23 C 1.38915 * 109.25051 * 359.97438 * 9 8 7 24 24 C 1.51756 * 124.55429 * 359.86593 * 7 6 5 25 25 H 1.08998 * 109.47064 * 180.21959 * 1 2 3 26 26 H 1.09006 * 109.47473 * 300.22510 * 1 2 3 27 27 H 1.09007 * 109.46845 * 60.22045 * 1 2 3 28 28 H 1.09001 * 109.51825 * 310.29715 * 4 2 1 29 29 H 1.08997 * 109.51904 * 70.47378 * 4 2 1 30 30 H 1.08999 * 109.54496 * 189.13149 * 5 4 2 31 31 H 1.09002 * 109.63675 * 68.71967 * 5 4 2 32 32 H 0.97010 * 119.99800 * 180.02562 * 16 15 13 33 33 H 1.09003 * 109.58959 * 136.30122 * 24 7 6 34 34 H 1.09002 * 109.59028 * 256.73179 * 24 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8949 1.0272 0.0000 4 6 2.0450 -0.7270 1.2459 5 6 3.5522 -0.4988 1.3729 6 6 4.2149 -0.8429 0.0442 7 6 3.5386 -0.9393 -1.1067 8 16 4.6153 -1.3468 -2.4332 9 6 6.0100 -1.3808 -1.3627 10 7 7.3080 -1.6352 -1.6214 11 7 8.2017 -1.6160 -0.7018 12 7 7.8757 -1.3278 0.6276 13 6 8.8529 -1.3146 1.5864 14 1 8.5998 -1.0915 2.6124 15 6 10.1722 -1.5885 1.2391 16 7 10.4797 -1.8590 -0.0072 17 14 11.5055 -1.5698 2.5473 18 1 11.1914 -2.5807 3.5888 19 1 12.8148 -1.8906 1.9242 20 1 11.5704 -0.2226 3.1687 21 6 6.5972 -1.0621 0.9620 22 8 6.2947 -0.8094 2.1150 23 6 5.6012 -1.0855 -0.0683 24 6 2.0426 -0.7261 -1.2464 25 1 -0.3633 -1.0276 0.0039 26 1 -0.3634 0.5173 0.8880 27 1 -0.3633 0.5104 -0.8920 28 1 1.5417 -0.3357 2.1300 29 1 1.8441 -1.7943 1.1538 30 1 3.9531 -1.1401 2.1579 31 1 3.7452 0.5457 1.6177 32 1 11.3994 -2.0504 -0.2492 33 1 1.8406 -0.1214 -2.1305 34 1 1.5430 -1.6905 -1.3388 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000000148738.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:04:09 Heat of formation + Delta-G solvation = 42.987877 kcal Electronic energy + Delta-G solvation = -20799.718460 eV Core-core repulsion = 17631.806026 eV Total energy + Delta-G solvation = -3167.912433 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 291.078 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.16821 -38.34953 -36.49477 -35.40028 -33.79993 -32.01151 -30.65177 -29.64273 -26.99972 -26.33461 -23.88135 -23.43698 -22.04003 -20.92028 -19.23556 -18.45768 -17.33527 -16.58212 -15.98184 -15.46225 -15.10068 -14.67812 -14.42421 -14.00183 -13.76989 -13.26057 -12.88967 -12.65497 -12.52255 -12.27015 -12.19949 -11.98979 -11.87524 -11.69248 -11.48043 -11.23366 -10.88815 -10.87866 -10.68405 -10.48102 -10.20031 -9.92219 -9.82734 -9.26118 -9.00329 -8.78805 -7.74189 -7.36057 -7.25949 -4.73060 0.96324 2.09816 2.49414 2.69424 2.75303 2.83541 2.83875 2.88815 3.34276 3.81454 4.06259 4.76479 4.91078 4.94835 4.98978 5.24650 5.38274 5.58621 5.61666 5.70882 5.77556 5.80294 5.87856 5.93133 6.06136 6.16260 6.24755 6.32013 6.42098 6.48810 6.51087 6.60580 6.72543 6.99529 7.20708 7.28623 7.84775 8.06790 9.00340 9.58531 9.85407 Molecular weight = 291.08amu Principal moments of inertia in cm(-1) A = 0.028894 B = 0.004879 C = 0.004209 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 968.831650 B = 5737.090555 C = 6651.016199 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.089 4.089 3 H 0.073 0.927 4 C -0.113 4.113 5 C -0.055 4.055 6 C -0.011 4.011 7 C -0.229 4.229 8 S 0.099 5.901 9 C 0.026 3.974 10 N -0.307 5.307 11 N 0.032 4.968 12 N -0.224 5.224 13 C -0.191 4.191 14 H 0.145 0.855 15 C 0.017 3.983 16 N -0.704 5.704 17 Si 0.956 3.044 18 H -0.257 1.257 19 H -0.268 1.268 20 H -0.257 1.257 21 C 0.477 3.523 22 O -0.567 6.567 23 C -0.260 4.260 24 C -0.026 4.026 25 H 0.054 0.946 26 H 0.054 0.946 27 H 0.053 0.947 28 H 0.063 0.937 29 H 0.062 0.938 30 H 0.084 0.916 31 H 0.072 0.928 32 H 0.295 0.705 33 H 0.069 0.931 34 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.909 1.477 0.262 9.034 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.109 4.109 3 H 0.091 0.909 4 C -0.151 4.151 5 C -0.094 4.094 6 C -0.023 4.023 7 C -0.346 4.346 8 S 0.355 5.645 9 C -0.225 4.225 10 N -0.175 5.175 11 N 0.054 4.946 12 N -0.025 5.025 13 C -0.341 4.341 14 H 0.162 0.838 15 C -0.206 4.206 16 N -0.333 5.333 17 Si 0.777 3.223 18 H -0.181 1.181 19 H -0.192 1.192 20 H -0.181 1.181 21 C 0.278 3.722 22 O -0.448 6.448 23 C -0.279 4.279 24 C -0.066 4.066 25 H 0.073 0.927 26 H 0.073 0.927 27 H 0.072 0.928 28 H 0.082 0.918 29 H 0.081 0.919 30 H 0.103 0.897 31 H 0.091 0.909 32 H 0.107 0.893 33 H 0.087 0.913 34 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -8.195 1.015 -1.669 8.424 hybrid contribution 0.077 0.425 2.370 2.409 sum -8.117 1.440 0.701 8.274 Atomic orbital electron populations 1.21821 0.95163 1.01708 1.01487 1.21164 0.94920 0.99935 0.94876 0.90885 1.21650 0.95746 1.00542 0.97130 1.20570 0.93018 1.02045 0.93752 1.18917 0.90428 0.97934 0.95023 1.23929 0.98795 1.16436 0.95457 1.83389 0.95160 1.76290 1.09639 1.23999 0.96648 1.06322 0.95548 1.72922 0.97989 1.21700 1.24859 1.81788 1.14412 1.15933 0.82497 1.48002 1.07765 1.37472 1.09240 1.21187 0.86192 1.35124 0.91589 0.83758 1.26186 0.99460 0.96329 0.98588 1.70167 1.22081 1.24052 1.16965 0.85484 0.77368 0.80589 0.78867 1.18116 1.19180 1.18122 1.17235 0.82289 0.83335 0.89327 1.90698 1.80107 1.53843 1.20196 1.19121 0.95167 1.20406 0.93231 1.20190 0.88274 1.00212 0.97883 0.92694 0.92678 0.92788 0.91812 0.91897 0.89717 0.90926 0.89313 0.91256 0.91093 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.41 9.18 37.16 0.34 -1.07 16 2 C -0.09 -1.12 2.72 -90.49 -0.25 -1.37 16 3 H 0.07 0.96 8.10 -51.93 -0.42 0.54 16 4 C -0.11 -1.58 5.21 -26.66 -0.14 -1.72 16 5 C -0.05 -1.00 5.23 -27.05 -0.14 -1.14 16 6 C -0.01 -0.24 5.79 -104.19 -0.60 -0.84 16 7 C -0.23 -4.21 6.31 -35.33 -0.22 -4.43 16 8 S 0.10 1.92 23.25 -107.50 -2.50 -0.58 16 9 C 0.03 0.63 7.76 -16.01 -0.12 0.51 16 10 N -0.31 -8.07 11.64 31.68 0.37 -7.70 16 11 N 0.03 0.87 10.13 60.35 0.61 1.49 16 12 N -0.22 -6.04 3.62 -13.07 -0.05 -6.09 16 13 C -0.19 -4.70 9.67 -14.95 -0.14 -4.85 16 14 H 0.15 3.37 7.19 -52.48 -0.38 2.99 16 15 C 0.02 0.37 5.49 -17.49 -0.10 0.27 16 16 N -0.70 -16.54 11.31 55.50 0.63 -15.92 16 17 Si 0.96 16.16 29.55 -169.99 -5.02 11.14 16 18 H -0.26 -4.28 7.11 56.52 0.40 -3.88 16 19 H -0.27 -4.34 7.11 56.52 0.40 -3.94 16 20 H -0.26 -4.28 7.11 56.52 0.40 -3.88 16 21 C 0.48 12.76 7.56 -14.27 -0.11 12.66 16 22 O -0.57 -15.37 14.76 5.06 0.07 -15.30 16 23 C -0.26 -6.43 5.89 -106.55 -0.63 -7.06 16 24 C -0.03 -0.36 5.55 -27.32 -0.15 -0.52 16 25 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 26 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 27 H 0.05 0.47 8.14 -51.92 -0.42 0.05 16 28 H 0.06 0.77 8.12 -51.93 -0.42 0.35 16 29 H 0.06 0.87 8.10 -51.93 -0.42 0.45 16 30 H 0.08 1.70 7.12 -51.93 -0.37 1.33 16 31 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16 32 H 0.30 6.10 8.30 -40.82 -0.34 5.76 16 33 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 34 H 0.07 0.91 8.12 -51.93 -0.42 0.48 16 LS Contribution 297.70 15.07 4.49 4.49 Total: -1.00 -28.90 297.70 -7.34 -36.24 By element: Atomic # 1 Polarization: 5.45 SS G_CDS: -3.68 Total: 1.77 kcal Atomic # 6 Polarization: -7.28 SS G_CDS: -2.26 Total: -9.54 kcal Atomic # 7 Polarization: -29.78 SS G_CDS: 1.56 Total: -28.22 kcal Atomic # 8 Polarization: -15.37 SS G_CDS: 0.07 Total: -15.30 kcal Atomic # 14 Polarization: 16.16 SS G_CDS: -5.02 Total: 11.14 kcal Atomic # 16 Polarization: 1.92 SS G_CDS: -2.50 Total: -0.58 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -28.90 -7.34 -36.24 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000000148738.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.231 kcal (2) G-P(sol) polarization free energy of solvation -28.898 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.333 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.345 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.243 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.988 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds