Wall clock time and date at job start Tue Mar 31 2020 02:47:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30671 * 1 3 3 Si 1.86797 * 120.00394 * 2 1 4 4 H 1.48503 * 109.46994 * 240.00469 * 3 2 1 5 5 H 1.48507 * 109.46827 * 359.97438 * 3 2 1 6 6 H 1.48494 * 109.47464 * 120.00068 * 3 2 1 7 7 C 1.40051 * 119.99614 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99807 * 179.97438 * 7 2 1 9 9 C 1.46374 * 120.00382 * 359.97438 * 7 2 1 10 10 O 1.21691 * 119.99549 * 0.02562 * 9 7 2 11 11 N 1.34775 * 120.00235 * 179.97438 * 9 7 2 12 12 N 1.40098 * 119.99982 * 180.02562 * 11 9 7 13 13 C 1.36569 * 119.77982 * 74.99398 * 12 11 9 14 14 S 1.76204 * 118.46333 * 359.96125 * 13 12 11 15 15 N 1.31025 * 123.07017 * 179.97438 * 13 12 11 16 16 C 1.34811 * 121.60825 * 0.02562 * 15 13 12 17 17 C 1.39818 * 121.61655 * 180.02562 * 16 15 13 18 18 C 1.36636 * 119.66255 * 179.97438 * 17 16 15 19 19 C 1.38905 * 120.97295 * 359.97438 * 18 17 16 20 20 C 1.36759 * 120.73022 * 0.02562 * 19 18 17 21 21 C 1.39412 * 119.51228 * 359.97438 * 20 19 18 22 22 C 1.35347 * 119.76786 * 254.97376 * 12 11 9 23 23 O 1.21723 * 121.25030 * 0.02562 * 22 12 11 24 24 H 0.97001 * 119.99638 * 359.97438 * 1 2 3 25 25 H 0.96999 * 119.99827 * 359.97438 * 11 9 7 26 26 H 1.40999 * 99.99756 * 180.02562 * 14 13 12 27 27 H 1.07993 * 120.17131 * 359.97438 * 17 16 15 28 28 H 1.08001 * 119.51149 * 180.28627 * 18 17 16 29 29 H 1.08001 * 119.62902 * 180.02562 * 19 18 17 30 30 H 1.08003 * 120.24251 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2408 1.6176 0.0000 4 1 3.0945 1.6963 -1.2126 5 1 1.2758 2.7464 -0.0006 6 1 3.0946 1.6963 1.2124 7 6 2.0069 -1.2129 0.0005 8 1 3.0869 -1.2130 0.0001 9 6 1.2750 -2.4806 0.0017 10 8 0.0581 -2.4805 0.0017 11 7 1.9488 -3.6478 0.0017 12 7 1.2483 -4.8610 0.0022 13 6 0.6429 -5.2952 -1.1424 14 16 0.7692 -4.2979 -2.5895 15 7 -0.0277 -6.4186 -1.2146 16 6 -0.1650 -7.2294 -0.1464 17 6 -0.8801 -8.4284 -0.2235 18 6 -0.9937 -9.2204 0.8842 19 6 -0.4081 -8.8528 2.0889 20 6 0.2976 -7.6862 2.1957 21 6 0.4295 -6.8589 1.0813 22 6 1.1765 -5.5950 1.1371 23 8 1.7105 -5.2218 2.1653 24 1 -0.4850 0.8401 0.0004 25 1 2.9188 -3.6478 0.0005 26 1 0.0321 -5.0873 -3.4959 27 1 -1.3403 -8.7271 -1.1537 28 1 -1.5427 -10.1483 0.8207 29 1 -0.5112 -9.4954 2.9507 30 1 0.7500 -7.4082 3.1361 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000000425046.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:47:09 Heat of formation + Delta-G solvation = 25.066948 kcal Electronic energy + Delta-G solvation = -20388.129826 eV Core-core repulsion = 17083.607189 eV Total energy + Delta-G solvation = -3304.522638 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 291.046 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.21004 -38.64303 -37.40048 -36.70608 -34.25828 -32.63225 -31.51078 -30.37235 -29.83045 -26.46430 -24.84672 -24.08252 -21.85716 -20.87713 -19.40075 -18.55901 -18.29380 -17.48726 -16.40722 -15.77500 -15.66837 -15.15201 -14.93498 -14.68011 -14.10361 -13.94403 -13.82594 -13.20054 -12.76844 -12.62858 -12.38669 -12.00161 -11.79733 -11.45475 -11.11544 -10.88941 -10.74475 -10.45496 -10.11329 -10.02316 -9.94557 -9.11177 -9.05909 -8.70545 -8.33610 -7.93296 -7.47603 -6.41894 -4.90706 0.59739 0.94054 1.17339 2.11545 2.28369 2.46956 2.96042 3.08331 3.13853 3.16208 3.99231 4.10809 4.25625 4.35475 4.48267 4.78707 4.93041 5.06215 5.28679 5.38999 5.52278 5.68358 5.98010 6.15022 6.30120 6.43031 6.70669 6.85309 7.23246 7.36211 7.48717 7.83464 7.99894 8.25481 8.76976 8.98301 10.26210 10.48727 Molecular weight = 291.05amu Principal moments of inertia in cm(-1) A = 0.027021 B = 0.004953 C = 0.004483 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1035.978894 B = 5651.272497 C = 6243.826783 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.758 5.758 2 C 0.088 3.912 3 Si 0.919 3.081 4 H -0.264 1.264 5 H -0.279 1.279 6 H -0.266 1.266 7 C -0.522 4.522 8 H 0.078 0.922 9 C 0.551 3.449 10 O -0.550 6.550 11 N -0.555 5.555 12 N -0.315 5.315 13 C 0.422 3.578 14 S 0.040 5.960 15 N -0.560 5.560 16 C 0.184 3.816 17 C -0.124 4.124 18 C -0.071 4.071 19 C -0.156 4.156 20 C -0.032 4.032 21 C -0.203 4.203 22 C 0.554 3.446 23 O -0.497 6.497 24 H 0.274 0.726 25 H 0.409 0.591 26 H 0.105 0.895 27 H 0.135 0.865 28 H 0.129 0.871 29 H 0.128 0.872 30 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.449 -12.959 -2.968 13.373 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.386 5.386 2 C -0.134 4.134 3 Si 0.743 3.257 4 H -0.189 1.189 5 H -0.204 1.204 6 H -0.190 1.190 7 C -0.560 4.560 8 H 0.096 0.904 9 C 0.357 3.643 10 O -0.427 6.427 11 N -0.312 5.312 12 N -0.123 5.123 13 C 0.048 3.952 14 S 0.200 5.800 15 N -0.291 5.291 16 C 0.069 3.931 17 C -0.144 4.144 18 C -0.091 4.091 19 C -0.175 4.175 20 C -0.052 4.052 21 C -0.212 4.212 22 C 0.345 3.655 23 O -0.369 6.369 24 H 0.085 0.915 25 H 0.249 0.751 26 H 0.068 0.932 27 H 0.152 0.848 28 H 0.147 0.853 29 H 0.146 0.854 30 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 0.532 -12.154 -3.598 12.687 hybrid contribution 0.527 -0.172 1.007 1.149 sum 1.059 -12.326 -2.592 12.640 Atomic orbital electron populations 1.69989 1.07143 1.28156 1.33267 1.25709 0.94796 1.00397 0.92465 0.86231 0.79690 0.80040 0.79741 1.18897 1.20373 1.19036 1.20560 0.93881 0.87088 1.54490 0.90424 1.18986 0.88050 0.80410 0.76832 1.90680 1.13512 1.84326 1.54182 1.47058 1.07074 0.92393 1.84725 1.45254 1.44187 1.14704 1.08181 1.24787 0.88016 0.91991 0.90372 1.87945 1.66203 1.25569 1.00332 1.69121 1.25183 1.04963 1.29826 1.18671 0.93403 0.93445 0.87593 1.20514 1.01066 0.93109 0.99740 1.20949 0.96928 0.98852 0.92347 1.20810 1.00793 0.97605 0.98326 1.20738 0.94923 0.92364 0.97174 1.20594 1.06925 0.96858 0.96816 1.18644 0.80839 0.83657 0.82320 1.90840 1.46132 1.71377 1.28550 0.91480 0.75068 0.93200 0.84758 0.85311 0.85358 0.84686 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.76 -21.42 11.83 55.55 0.66 -20.76 16 2 C 0.09 2.30 5.50 -17.37 -0.10 2.20 16 3 Si 0.92 18.93 29.56 -169.99 -5.02 13.91 16 4 H -0.26 -5.23 7.11 56.52 0.40 -4.82 16 5 H -0.28 -5.64 7.11 56.52 0.40 -5.24 16 6 H -0.27 -5.39 7.11 56.52 0.40 -4.99 16 7 C -0.52 -13.71 9.54 -35.63 -0.34 -14.05 16 8 H 0.08 1.82 7.85 -52.48 -0.41 1.41 16 9 C 0.55 14.88 6.81 -12.99 -0.09 14.80 16 10 O -0.55 -16.93 14.91 5.20 0.08 -16.85 16 11 N -0.56 -12.60 4.86 30.19 0.15 -12.45 16 12 N -0.32 -6.89 2.93 -13.08 -0.04 -6.93 16 13 C 0.42 8.40 7.58 -88.53 -0.67 7.73 16 14 S 0.04 0.70 24.12 -107.50 -2.59 -1.89 16 15 N -0.56 -10.36 10.24 -10.91 -0.11 -10.47 16 16 C 0.18 3.21 6.62 -84.78 -0.56 2.65 16 17 C -0.12 -1.68 9.99 -39.57 -0.40 -2.07 16 18 C -0.07 -0.80 9.95 -39.91 -0.40 -1.19 16 19 C -0.16 -1.84 9.97 -39.87 -0.40 -2.24 16 20 C -0.03 -0.49 9.63 -39.68 -0.38 -0.87 16 21 C -0.20 -3.75 5.89 -104.76 -0.62 -4.36 16 22 C 0.55 12.11 7.79 -12.49 -0.10 12.01 16 23 O -0.50 -11.85 17.03 5.17 0.09 -11.76 16 24 H 0.27 7.04 8.29 -40.82 -0.34 6.71 16 25 H 0.41 8.04 8.81 -182.60 -1.61 6.43 16 26 H 0.10 1.45 9.50 96.90 0.92 2.37 16 27 H 0.13 1.55 8.06 -52.49 -0.42 1.13 16 28 H 0.13 0.98 8.06 -52.49 -0.42 0.55 16 29 H 0.13 1.11 8.06 -52.49 -0.42 0.68 16 30 H 0.14 1.95 7.82 -52.48 -0.41 1.54 16 LS Contribution 292.51 15.07 4.41 4.41 Total: -1.00 -34.08 292.51 -8.35 -42.43 By element: Atomic # 1 Polarization: 7.68 SS G_CDS: -1.91 Total: 5.77 kcal Atomic # 6 Polarization: 18.64 SS G_CDS: -4.04 Total: 14.60 kcal Atomic # 7 Polarization: -51.26 SS G_CDS: 0.65 Total: -50.61 kcal Atomic # 8 Polarization: -28.77 SS G_CDS: 0.17 Total: -28.61 kcal Atomic # 14 Polarization: 18.93 SS G_CDS: -5.02 Total: 13.91 kcal Atomic # 16 Polarization: 0.70 SS G_CDS: -2.59 Total: -1.89 kcal Total LS contribution 4.41 Total: 4.41 kcal Total: -34.08 -8.35 -42.43 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000000425046.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.494 kcal (2) G-P(sol) polarization free energy of solvation -34.081 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.414 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.347 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.428 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.067 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds