Wall clock time and date at job start Tue Mar 31 2020 03:13:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86796 * 119.99780 * 2 1 4 4 H 1.48499 * 109.47435 * 270.00257 * 3 2 1 5 5 H 1.48504 * 109.47103 * 30.00166 * 3 2 1 6 6 H 1.48506 * 109.46930 * 149.99807 * 3 2 1 7 7 C 1.37871 * 119.99981 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99635 * 180.02562 * 7 2 1 9 9 C 1.50697 * 120.00356 * 0.02562 * 7 2 1 10 10 S 1.81406 * 109.47477 * 179.97438 * 9 7 2 11 11 O 1.42095 * 108.57608 * 65.50678 * 10 9 7 12 12 O 1.42097 * 108.57325 * 294.48497 * 10 9 7 13 13 C 1.81396 * 101.92081 * 179.97438 * 10 9 7 14 14 C 1.50705 * 109.46963 * 179.97438 * 13 10 9 15 15 O 1.21278 * 119.99782 * 0.02562 * 14 13 10 16 16 N 1.34773 * 119.99926 * 179.97438 * 14 13 10 17 17 C 1.46500 * 119.99921 * 180.02562 * 16 14 13 18 18 C 1.53000 * 109.47156 * 180.02562 * 17 16 14 19 19 H 1.09002 * 110.27543 * 59.29672 * 18 17 16 20 20 C 1.54944 * 110.30885 * 181.38766 * 18 17 16 21 21 C 1.55566 * 100.82489 * 155.40344 * 20 18 17 22 22 C 1.54383 * 102.27674 * 325.88222 * 21 20 18 23 23 O 1.43235 * 107.58532 * 21.35887 * 22 21 20 24 24 H 0.97005 * 120.00620 * 0.02562 * 1 2 3 25 25 H 1.08994 * 109.47490 * 59.99076 * 9 7 2 26 26 H 1.09008 * 109.46757 * 299.99914 * 9 7 2 27 27 H 1.09003 * 109.47514 * 59.99688 * 13 10 9 28 28 H 1.08996 * 109.47518 * 299.99532 * 13 10 9 29 29 H 0.97000 * 120.00176 * 0.02562 * 16 14 13 30 30 H 1.08994 * 109.47195 * 59.99796 * 17 16 14 31 31 H 1.09004 * 109.47000 * 300.00321 * 17 16 14 32 32 H 1.08997 * 111.13230 * 273.37566 * 20 18 17 33 33 H 1.09003 * 111.12649 * 37.53913 * 20 18 17 34 34 H 1.09007 * 110.84061 * 207.68390 * 21 20 18 35 35 H 1.09002 * 111.01266 * 84.16388 * 21 20 18 36 36 H 1.08995 * 109.83335 * 261.84022 * 22 21 20 37 37 H 1.09003 * 109.82742 * 140.86392 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6177 0.0000 4 1 2.4965 2.0465 -1.4000 5 1 1.4464 2.6527 0.7001 6 1 3.5466 1.4402 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1939 0.0010 9 6 1.2511 -2.4991 0.0005 10 16 2.4299 -3.8780 0.0005 11 8 3.1485 -3.8591 1.2262 12 8 3.1483 -3.8592 -1.2253 13 6 1.3244 -5.3161 0.0013 14 6 2.1447 -6.5803 0.0008 15 8 3.3558 -6.5172 0.0004 16 7 1.5324 -7.7809 0.0017 17 6 2.3299 -9.0098 0.0018 18 6 1.3974 -10.2229 0.0023 19 1 0.7531 -10.2044 -0.8766 20 6 2.2215 -11.5346 0.0376 21 6 1.1885 -12.5116 0.6688 22 6 0.4194 -11.5925 1.6420 23 8 0.6056 -10.2426 1.2007 24 1 -0.4851 0.8400 -0.0004 25 1 0.6246 -2.5571 -0.8895 26 1 0.6241 -2.5566 0.8904 27 1 0.6951 -5.2913 -0.8884 28 1 0.6959 -5.2908 0.8915 29 1 0.5637 -7.8313 0.0024 30 1 2.9593 -9.0345 0.8913 31 1 2.9581 -9.0353 -0.8886 32 1 2.5003 -11.8506 -0.9676 33 1 3.1013 -11.4289 0.6723 34 1 1.6927 -13.3131 1.2089 35 1 0.5205 -12.9183 -0.0904 36 1 0.8142 -11.7094 2.6512 37 1 -0.6412 -11.8433 1.6272 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000058256821.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:13:55 Heat of formation + Delta-G solvation = -161.235735 kcal Electronic energy + Delta-G solvation = -20999.611605 eV Core-core repulsion = 17483.241701 eV Total energy + Delta-G solvation = -3516.369904 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 291.102 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.17115 -39.28609 -35.89795 -35.06371 -34.82491 -33.31982 -32.62064 -31.29872 -29.57529 -28.94818 -25.62897 -23.50861 -22.22938 -21.70844 -20.67534 -17.98283 -17.53557 -17.37666 -16.83238 -16.37171 -16.00311 -15.84740 -15.30639 -15.14524 -14.82125 -14.58238 -14.21691 -13.89039 -13.52124 -13.14653 -12.94464 -12.47389 -12.25380 -12.18790 -12.10179 -11.77836 -11.70973 -11.35647 -11.31090 -11.01045 -10.95667 -10.86146 -10.58747 -10.33391 -10.09085 -9.94335 -9.75592 -9.22043 -9.06036 -8.68475 -6.31187 -4.39989 0.91413 2.57154 2.95222 3.25272 3.30262 3.37368 3.38098 3.85966 3.97740 4.24783 4.28084 4.40753 4.49860 4.66498 4.71154 4.73660 4.87036 5.01687 5.06145 5.17365 5.22453 5.31865 5.33161 5.43345 5.46565 5.50423 5.58724 5.70499 6.24508 6.58452 6.65457 6.69634 7.30138 7.51866 7.77090 8.08730 8.62240 9.26980 10.80863 Molecular weight = 291.10amu Principal moments of inertia in cm(-1) A = 0.047401 B = 0.002940 C = 0.002850 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 590.566305 B = 9522.530130 C = 9822.319529 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.883 5.883 2 C 0.074 3.926 3 Si 0.906 3.094 4 H -0.273 1.273 5 H -0.281 1.281 6 H -0.266 1.266 7 C -0.528 4.528 8 H 0.074 0.926 9 C -0.407 4.407 10 S 2.424 3.576 11 O -0.942 6.942 12 O -0.943 6.943 13 C -0.675 4.675 14 C 0.544 3.456 15 O -0.528 6.528 16 N -0.721 5.721 17 C 0.119 3.881 18 C 0.068 3.932 19 H 0.080 0.920 20 C -0.148 4.148 21 C -0.156 4.156 22 C 0.050 3.950 23 O -0.377 6.377 24 H 0.268 0.732 25 H 0.086 0.914 26 H 0.086 0.914 27 H 0.154 0.846 28 H 0.155 0.845 29 H 0.407 0.593 30 H 0.077 0.923 31 H 0.084 0.916 32 H 0.088 0.912 33 H 0.085 0.915 34 H 0.083 0.917 35 H 0.078 0.922 36 H 0.070 0.930 37 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.545 -23.716 -0.057 23.980 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.520 5.520 2 C -0.131 4.131 3 Si 0.732 3.268 4 H -0.199 1.199 5 H -0.207 1.207 6 H -0.190 1.190 7 C -0.567 4.567 8 H 0.092 0.908 9 C -0.542 4.542 10 S 2.604 3.396 11 O -0.940 6.940 12 O -0.940 6.940 13 C -0.798 4.798 14 C 0.329 3.671 15 O -0.405 6.405 16 N -0.373 5.373 17 C -0.005 4.005 18 C 0.010 3.990 19 H 0.098 0.902 20 C -0.187 4.187 21 C -0.193 4.193 22 C -0.026 4.026 23 O -0.296 6.296 24 H 0.078 0.922 25 H 0.104 0.896 26 H 0.104 0.896 27 H 0.172 0.828 28 H 0.173 0.827 29 H 0.242 0.758 30 H 0.096 0.904 31 H 0.102 0.898 32 H 0.107 0.893 33 H 0.104 0.896 34 H 0.102 0.898 35 H 0.096 0.904 36 H 0.089 0.911 37 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -1.994 -23.498 0.053 23.582 hybrid contribution -1.231 0.368 -0.079 1.287 sum -3.225 -23.130 -0.026 23.354 Atomic orbital electron populations 1.69945 1.06246 1.27702 1.48087 1.24930 0.95045 0.99598 0.93569 0.86337 0.80066 0.81615 0.78757 1.19904 1.20679 1.18997 1.20374 0.93091 0.88329 1.54859 0.90837 1.27620 1.10000 1.09883 1.06706 1.08457 0.78794 0.77005 0.75297 1.93465 1.69075 1.85436 1.45987 1.93461 1.69087 1.85469 1.46003 1.31154 1.19314 1.16684 1.12656 1.19434 0.87756 0.84193 0.75678 1.90844 1.13607 1.87020 1.49005 1.45732 1.10681 1.04920 1.76008 1.21593 0.93463 0.81911 1.03563 1.23267 0.92141 0.94688 0.88926 0.90210 1.23291 0.98858 0.93686 1.02823 1.23167 0.98111 0.98742 0.99308 1.23136 0.99997 0.81471 0.98037 1.88466 1.72531 1.26246 1.42391 0.92237 0.89640 0.89601 0.82820 0.82749 0.75827 0.90425 0.89761 0.89307 0.89635 0.89785 0.90376 0.91138 0.91279 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.85 13.29 55.43 0.74 -24.11 16 2 C 0.07 2.06 5.46 -17.82 -0.10 1.96 16 3 Si 0.91 21.26 29.54 -169.99 -5.02 16.24 16 4 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 5 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 6 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 7 C -0.53 -14.76 9.13 -34.44 -0.31 -15.07 16 8 H 0.07 2.06 7.71 -52.48 -0.40 1.66 16 9 C -0.41 -9.66 5.56 36.00 0.20 -9.45 16 10 S 2.42 53.16 3.88 -107.50 -0.42 52.74 16 11 O -0.94 -23.80 17.95 -59.53 -1.07 -24.87 16 12 O -0.94 -23.61 17.95 -59.53 -1.07 -24.68 16 13 C -0.68 -10.35 6.29 36.01 0.23 -10.12 16 14 C 0.54 9.16 7.85 -10.98 -0.09 9.07 16 15 O -0.53 -11.21 15.62 2.56 0.04 -11.17 16 16 N -0.72 -8.93 5.49 -60.29 -0.33 -9.26 16 17 C 0.12 1.27 5.40 -4.04 -0.02 1.25 16 18 C 0.07 0.54 3.49 -25.71 -0.09 0.45 16 19 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 20 C -0.15 -0.86 6.59 -24.34 -0.16 -1.02 16 21 C -0.16 -0.77 7.03 -24.64 -0.17 -0.94 16 22 C 0.05 0.34 7.80 37.88 0.30 0.63 16 23 O -0.38 -3.62 10.94 -35.23 -0.39 -4.01 16 24 H 0.27 7.04 8.31 -40.82 -0.34 6.70 16 25 H 0.09 1.93 8.14 -51.93 -0.42 1.51 16 26 H 0.09 1.95 8.14 -51.92 -0.42 1.53 16 27 H 0.15 1.79 8.14 -51.92 -0.42 1.37 16 28 H 0.15 1.86 8.14 -51.93 -0.42 1.44 16 29 H 0.41 3.95 8.45 -40.82 -0.34 3.60 16 30 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 31 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 32 H 0.09 0.39 8.14 -51.93 -0.42 -0.03 16 33 H 0.09 0.51 8.06 -51.93 -0.42 0.09 16 34 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 35 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 36 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 37 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 LS Contribution 330.79 15.07 4.98 4.98 Total: -1.00 -38.16 330.79 -8.13 -46.28 By element: Atomic # 1 Polarization: 6.47 SS G_CDS: -5.38 Total: 1.10 kcal Atomic # 6 Polarization: -23.03 SS G_CDS: -0.22 Total: -23.25 kcal Atomic # 7 Polarization: -33.78 SS G_CDS: 0.41 Total: -33.38 kcal Atomic # 8 Polarization: -62.24 SS G_CDS: -2.48 Total: -64.72 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.24 kcal Atomic # 16 Polarization: 53.16 SS G_CDS: -0.42 Total: 52.74 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -38.16 -8.13 -46.28 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058256821.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -114.951 kcal (2) G-P(sol) polarization free energy of solvation -38.158 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -153.109 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.127 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.285 kcal (6) G-S(sol) free energy of system = (1) + (5) -161.236 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds