Wall clock time and date at job start Tue Mar 31 2020 03:14:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86805 * 120.00175 * 2 1 4 4 H 1.48498 * 109.46909 * 269.72379 * 3 2 1 5 5 H 1.48497 * 109.46701 * 29.72288 * 3 2 1 6 6 H 1.48500 * 109.46867 * 149.72394 * 3 2 1 7 7 C 1.37885 * 119.99913 * 179.72292 * 2 1 3 8 8 H 1.08000 * 119.99535 * 180.02562 * 7 2 1 9 9 C 1.50694 * 119.99902 * 0.02562 * 7 2 1 10 10 O 1.42897 * 112.94604 * 50.33206 * 9 7 2 11 11 C 1.53947 * 113.74350 * 278.74023 * 9 7 2 12 12 N 1.47811 * 86.03574 * 222.08551 * 11 9 7 13 13 S 1.65604 * 134.45524 * 204.64302 * 12 11 9 14 14 O 1.42095 * 104.27717 * 25.93463 * 13 12 11 15 15 O 1.42102 * 104.27702 * 153.79741 * 13 12 11 16 16 C 1.81408 * 104.44675 * 269.86811 * 13 12 11 17 17 C 1.53005 * 109.46787 * 179.97438 * 16 13 12 18 18 H 1.09007 * 110.27200 * 60.63671 * 17 16 13 19 19 C 1.54944 * 110.30764 * 182.82913 * 17 16 13 20 20 C 1.55307 * 100.93972 * 155.35890 * 19 17 16 21 21 C 1.54386 * 102.25412 * 325.87084 * 20 19 17 22 22 O 1.43234 * 107.58735 * 21.35532 * 21 20 19 23 23 C 1.47583 * 91.05488 * 24.54804 * 12 11 9 24 24 H 0.97001 * 119.99646 * 0.28069 * 1 2 3 25 25 H 0.96696 * 114.00113 * 309.66629 * 10 9 7 26 26 H 1.08998 * 113.76527 * 336.34933 * 11 9 7 27 27 H 1.08993 * 113.77293 * 107.74493 * 11 9 7 28 28 H 1.09000 * 109.47013 * 299.99910 * 16 13 12 29 29 H 1.08994 * 109.47309 * 60.00308 * 16 13 12 30 30 H 1.08995 * 111.12825 * 273.27940 * 19 17 16 31 31 H 1.09003 * 111.12384 * 37.44345 * 19 17 16 32 32 H 1.08999 * 110.84699 * 207.67763 * 20 19 17 33 33 H 1.09006 * 110.84665 * 84.05907 * 20 19 17 34 34 H 1.09002 * 109.82765 * 261.84355 * 21 20 19 35 35 H 1.08994 * 109.82935 * 140.87154 * 21 20 19 36 36 H 1.08993 * 113.76704 * 221.15168 * 23 12 11 37 37 H 1.09002 * 113.76976 * 89.75366 * 23 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.5026 2.0430 -1.4001 5 1 1.4437 2.6543 0.6942 6 1 3.5438 1.4418 0.7059 7 6 2.0046 -1.1941 0.0058 8 1 3.0846 -1.1940 0.0062 9 6 1.2511 -2.4991 0.0115 10 8 0.2454 -2.5662 -1.0015 11 6 0.7551 -2.9224 1.4061 12 7 1.1912 -4.2851 1.0347 13 16 0.7617 -5.8111 1.5135 14 8 -0.5764 -5.6713 1.9708 15 8 1.0717 -6.6298 0.3942 16 6 1.8726 -6.1802 2.8993 17 6 1.5705 -7.5808 3.4360 18 1 1.7288 -8.3262 2.6565 19 6 2.4606 -7.8888 4.6663 20 6 1.5980 -8.9553 5.3946 21 6 0.1614 -8.4809 5.0867 22 8 0.2209 -7.6477 3.9232 23 6 2.1608 -3.7399 0.0648 24 1 -0.4850 0.8401 -0.0041 25 1 -0.3466 -1.8019 -1.0192 26 1 1.3258 -2.4867 2.2262 27 1 -0.3225 -2.8252 1.5374 28 1 2.9067 -6.1369 2.5574 29 1 1.7209 -5.4473 3.6917 30 1 3.4221 -8.3021 4.3620 31 1 2.5947 -7.0021 5.2860 32 1 1.7893 -8.9423 6.4675 33 1 1.7761 -9.9475 4.9797 34 1 -0.2284 -7.9110 5.9301 35 1 -0.4787 -9.3415 4.8929 36 1 2.2033 -4.2942 -0.8727 37 1 3.1453 -3.5449 0.4901 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000189060708.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:14:01 Heat of formation + Delta-G solvation = -129.093254 kcal Electronic energy + Delta-G solvation = -22116.256083 eV Core-core repulsion = 18601.279981 eV Total energy + Delta-G solvation = -3514.976102 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 291.102 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -39.67615 -38.39553 -36.49761 -35.34411 -33.83736 -32.62850 -32.14138 -31.95138 -27.77126 -26.55285 -25.24037 -24.56855 -22.06519 -21.63910 -19.54572 -18.11915 -17.46073 -17.27696 -16.71549 -16.19453 -15.84940 -15.56978 -15.08802 -14.83288 -14.19232 -13.83965 -13.68428 -13.29163 -13.03823 -12.96542 -12.64603 -12.17518 -12.06099 -11.99880 -11.56680 -11.56291 -11.50878 -11.47829 -11.37325 -11.16943 -11.06235 -10.78129 -10.48063 -10.31580 -10.20843 -9.78602 -9.25556 -8.70858 -8.50691 -7.98466 -6.31892 -4.42907 0.69937 3.17424 3.18876 3.26318 3.28026 3.44435 4.08169 4.22199 4.25026 4.46426 4.53266 4.62844 4.78999 4.87203 4.94779 4.99731 5.19354 5.36160 5.42034 5.45232 5.49816 5.57526 5.72059 5.81875 6.03872 6.12097 6.35496 6.44037 6.70011 6.75223 6.86008 7.05683 7.56493 7.70616 7.90723 8.59843 9.27663 9.54570 10.74366 Molecular weight = 291.10amu Principal moments of inertia in cm(-1) A = 0.031703 B = 0.004084 C = 0.003940 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 882.998388 B = 6854.992149 C = 7105.295913 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.071 3.929 3 Si 0.907 3.093 4 H -0.277 1.277 5 H -0.284 1.284 6 H -0.272 1.272 7 C -0.538 4.538 8 H 0.071 0.929 9 C 0.245 3.755 10 O -0.572 6.572 11 C 0.104 3.896 12 N -1.028 6.028 13 S 2.625 3.375 14 O -0.941 6.941 15 O -0.964 6.964 16 C -0.648 4.648 17 C 0.088 3.912 18 H 0.086 0.914 19 C -0.143 4.143 20 C -0.158 4.158 21 C 0.050 3.950 22 O -0.374 6.374 23 C 0.127 3.873 24 H 0.273 0.727 25 H 0.391 0.609 26 H 0.076 0.924 27 H 0.073 0.927 28 H 0.138 0.862 29 H 0.135 0.865 30 H 0.087 0.913 31 H 0.084 0.916 32 H 0.084 0.916 33 H 0.079 0.921 34 H 0.073 0.927 35 H 0.072 0.928 36 H 0.074 0.926 37 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.603 -12.209 10.462 17.027 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.131 4.131 3 Si 0.734 3.266 4 H -0.203 1.203 5 H -0.210 1.210 6 H -0.197 1.197 7 C -0.577 4.577 8 H 0.089 0.911 9 C 0.201 3.799 10 O -0.383 6.383 11 C -0.022 4.022 12 N -0.869 5.869 13 S 2.718 3.282 14 O -0.932 6.932 15 O -0.954 6.954 16 C -0.774 4.774 17 C 0.029 3.971 18 H 0.104 0.896 19 C -0.181 4.181 20 C -0.196 4.196 21 C -0.027 4.027 22 O -0.293 6.293 23 C 0.002 3.998 24 H 0.083 0.917 25 H 0.246 0.754 26 H 0.094 0.906 27 H 0.091 0.909 28 H 0.157 0.843 29 H 0.153 0.847 30 H 0.106 0.894 31 H 0.102 0.898 32 H 0.103 0.897 33 H 0.098 0.902 34 H 0.091 0.909 35 H 0.090 0.910 36 H 0.093 0.907 37 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 4.814 -13.326 9.965 17.322 hybrid contribution 0.950 1.405 0.984 1.960 sum 5.763 -11.921 10.949 17.182 Atomic orbital electron populations 1.69423 1.06137 1.28102 1.49879 1.25090 0.95007 0.99782 0.93260 0.86362 0.79677 0.82186 0.78394 1.20326 1.21007 1.19678 1.21569 0.93859 0.90079 1.52184 0.91095 1.19852 0.85648 0.90648 0.83753 1.86053 1.47117 1.49748 1.55405 1.23871 1.00125 0.76025 1.02149 1.60327 1.53541 1.20007 1.53001 1.04629 0.75600 0.72800 0.75136 1.93561 1.31683 1.84918 1.83026 1.93533 1.86068 1.68098 1.47740 1.31009 1.18816 1.04535 1.22991 1.22576 0.83304 0.93818 0.97394 0.89582 1.23273 0.99088 0.99700 0.96058 1.23169 0.94863 0.99597 1.01937 1.23165 0.96770 0.94391 0.88351 1.88579 1.25990 1.70112 1.44644 1.23056 0.92276 0.94035 0.90434 0.91695 0.75404 0.90574 0.90899 0.84336 0.84697 0.89429 0.89751 0.89707 0.90249 0.90876 0.90955 0.90734 0.90021 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -23.11 11.20 55.43 0.62 -22.49 16 2 C 0.07 1.79 5.40 -17.82 -0.10 1.69 16 3 Si 0.91 19.42 29.54 -169.99 -5.02 14.40 16 4 H -0.28 -5.98 7.11 56.52 0.40 -5.58 16 5 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 6 H -0.27 -5.71 7.11 56.52 0.40 -5.31 16 7 C -0.54 -13.43 8.61 -34.44 -0.30 -13.73 16 8 H 0.07 1.69 7.81 -52.49 -0.41 1.28 16 9 C 0.25 5.96 1.40 -90.85 -0.13 5.83 16 10 O -0.57 -15.19 13.48 -35.23 -0.48 -15.66 16 11 C 0.10 2.31 8.32 -2.84 -0.02 2.29 16 12 N -1.03 -21.14 4.00 -118.52 -0.47 -21.61 16 13 S 2.62 50.20 5.76 -107.50 -0.62 49.59 16 14 O -0.94 -21.25 17.46 -60.83 -1.06 -22.32 16 15 O -0.96 -20.61 18.02 -57.54 -1.04 -21.65 16 16 C -0.65 -8.72 5.93 37.16 0.22 -8.50 16 17 C 0.09 1.12 3.48 -25.70 -0.09 1.03 16 18 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 19 C -0.14 -1.28 6.57 -24.48 -0.16 -1.44 16 20 C -0.16 -1.23 7.02 -24.78 -0.17 -1.40 16 21 C 0.05 0.51 7.79 37.88 0.30 0.81 16 22 O -0.37 -5.55 10.23 -38.43 -0.39 -5.94 16 23 C 0.13 2.63 8.31 -2.96 -0.02 2.61 16 24 H 0.27 6.69 8.31 -40.82 -0.34 6.35 16 25 H 0.39 10.47 6.60 45.56 0.30 10.77 16 26 H 0.08 1.54 8.09 -51.93 -0.42 1.12 16 27 H 0.07 1.73 8.14 -51.93 -0.42 1.30 16 28 H 0.14 1.48 8.14 -51.92 -0.42 1.06 16 29 H 0.13 1.68 8.14 -51.93 -0.42 1.26 16 30 H 0.09 0.63 8.14 -51.93 -0.42 0.20 16 31 H 0.08 0.73 8.06 -51.93 -0.42 0.31 16 32 H 0.08 0.51 8.14 -51.93 -0.42 0.08 16 33 H 0.08 0.53 8.14 -51.93 -0.42 0.10 16 34 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 36 H 0.07 1.54 8.14 -51.93 -0.42 1.12 16 37 H 0.08 1.43 8.09 -51.93 -0.42 1.01 16 LS Contribution 322.22 15.07 4.86 4.86 Total: -1.00 -32.36 322.22 -8.81 -41.17 By element: Atomic # 1 Polarization: 15.21 SS G_CDS: -4.73 Total: 10.48 kcal Atomic # 6 Polarization: -10.34 SS G_CDS: -0.48 Total: -10.82 kcal Atomic # 7 Polarization: -44.25 SS G_CDS: 0.15 Total: -44.10 kcal Atomic # 8 Polarization: -62.60 SS G_CDS: -2.97 Total: -65.57 kcal Atomic # 14 Polarization: 19.42 SS G_CDS: -5.02 Total: 14.40 kcal Atomic # 16 Polarization: 50.20 SS G_CDS: -0.62 Total: 49.59 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -32.36 -8.81 -41.17 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000189060708.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.923 kcal (2) G-P(sol) polarization free energy of solvation -32.358 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.281 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.812 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.170 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.093 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds