Wall clock time and date at job start Tue Mar 31 2020 03:14:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86805 * 120.00175 * 2 1 4 4 H 1.48498 * 109.46909 * 269.72379 * 3 2 1 5 5 H 1.48497 * 109.46701 * 29.72288 * 3 2 1 6 6 H 1.48500 * 109.46867 * 149.72394 * 3 2 1 7 7 C 1.37885 * 119.99913 * 179.72292 * 2 1 3 8 8 H 1.08000 * 119.99535 * 180.02562 * 7 2 1 9 9 C 1.50694 * 119.99902 * 0.02562 * 7 2 1 10 10 O 1.42897 * 112.94604 * 50.33206 * 9 7 2 11 11 C 1.53947 * 113.74350 * 278.74023 * 9 7 2 12 12 N 1.47811 * 86.03574 * 222.08551 * 11 9 7 13 13 S 1.65604 * 134.45524 * 204.64302 * 12 11 9 14 14 O 1.42095 * 104.27717 * 25.93463 * 13 12 11 15 15 O 1.42102 * 104.27702 * 153.79741 * 13 12 11 16 16 C 1.81408 * 104.44675 * 269.86811 * 13 12 11 17 17 C 1.53005 * 109.46787 * 179.97438 * 16 13 12 18 18 H 1.09007 * 110.27200 * 60.63671 * 17 16 13 19 19 C 1.54944 * 110.30764 * 182.82913 * 17 16 13 20 20 C 1.55307 * 100.93972 * 155.35890 * 19 17 16 21 21 C 1.54386 * 102.25412 * 325.87084 * 20 19 17 22 22 O 1.43234 * 107.58735 * 21.35532 * 21 20 19 23 23 C 1.47583 * 91.05488 * 24.54804 * 12 11 9 24 24 H 0.97001 * 119.99646 * 0.28069 * 1 2 3 25 25 H 0.96696 * 114.00113 * 309.66629 * 10 9 7 26 26 H 1.08998 * 113.76527 * 336.34933 * 11 9 7 27 27 H 1.08993 * 113.77293 * 107.74493 * 11 9 7 28 28 H 1.09000 * 109.47013 * 299.99910 * 16 13 12 29 29 H 1.08994 * 109.47309 * 60.00308 * 16 13 12 30 30 H 1.08995 * 111.12825 * 273.27940 * 19 17 16 31 31 H 1.09003 * 111.12384 * 37.44345 * 19 17 16 32 32 H 1.08999 * 110.84699 * 207.67763 * 20 19 17 33 33 H 1.09006 * 110.84665 * 84.05907 * 20 19 17 34 34 H 1.09002 * 109.82765 * 261.84355 * 21 20 19 35 35 H 1.08994 * 109.82935 * 140.87154 * 21 20 19 36 36 H 1.08993 * 113.76704 * 221.15168 * 23 12 11 37 37 H 1.09002 * 113.76976 * 89.75366 * 23 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.5026 2.0430 -1.4001 5 1 1.4437 2.6543 0.6942 6 1 3.5438 1.4418 0.7059 7 6 2.0046 -1.1941 0.0058 8 1 3.0846 -1.1940 0.0062 9 6 1.2511 -2.4991 0.0115 10 8 0.2454 -2.5662 -1.0015 11 6 0.7551 -2.9224 1.4061 12 7 1.1912 -4.2851 1.0347 13 16 0.7617 -5.8111 1.5135 14 8 -0.5764 -5.6713 1.9708 15 8 1.0717 -6.6298 0.3942 16 6 1.8726 -6.1802 2.8993 17 6 1.5705 -7.5808 3.4360 18 1 1.7288 -8.3262 2.6565 19 6 2.4606 -7.8888 4.6663 20 6 1.5980 -8.9553 5.3946 21 6 0.1614 -8.4809 5.0867 22 8 0.2209 -7.6477 3.9232 23 6 2.1608 -3.7399 0.0648 24 1 -0.4850 0.8401 -0.0041 25 1 -0.3466 -1.8019 -1.0192 26 1 1.3258 -2.4867 2.2262 27 1 -0.3225 -2.8252 1.5374 28 1 2.9067 -6.1369 2.5574 29 1 1.7209 -5.4473 3.6917 30 1 3.4221 -8.3021 4.3620 31 1 2.5947 -7.0021 5.2860 32 1 1.7893 -8.9423 6.4675 33 1 1.7761 -9.9475 4.9797 34 1 -0.2284 -7.9110 5.9301 35 1 -0.4787 -9.3415 4.8929 36 1 2.2033 -4.2942 -0.8727 37 1 3.1453 -3.5449 0.4901 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000189060708.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:14:00 Heat of formation + Delta-G solvation = -156.228705 kcal Electronic energy + Delta-G solvation = -22117.432764 eV Core-core repulsion = 18601.279981 eV Total energy + Delta-G solvation = -3516.152783 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 291.102 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.54169 -40.14096 -38.12046 -36.96990 -35.73485 -34.09173 -33.55160 -32.78080 -29.55368 -27.50267 -26.93767 -26.33388 -22.79506 -22.52399 -21.31977 -19.72012 -19.26414 -18.37524 -18.14985 -17.46199 -17.22068 -16.88967 -16.77399 -15.98856 -15.78516 -15.44950 -14.88219 -14.71035 -14.57591 -14.04050 -13.86861 -13.64564 -13.36195 -13.23495 -13.16496 -13.08530 -13.05163 -12.80148 -12.74163 -12.54326 -12.22746 -12.18517 -12.13285 -11.79583 -11.57351 -11.05635 -10.68168 -10.59095 -10.28196 -9.72280 -8.19502 -6.37720 -0.76906 1.50017 1.52450 1.61902 1.66021 2.44096 2.59351 2.89786 3.00399 3.10310 3.33988 3.57365 3.69861 3.81985 3.91461 4.07816 4.24127 4.33651 4.35709 4.38140 4.52953 4.70173 4.74419 4.79309 4.82984 4.89625 4.98786 5.04821 5.11131 5.20572 5.26663 5.76158 5.83859 5.87860 6.02807 6.70034 7.35627 7.50058 8.86225 Molecular weight = 291.10amu Principal moments of inertia in cm(-1) A = 0.031703 B = 0.004084 C = 0.003940 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 882.998388 B = 6854.992149 C = 7105.295913 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C 0.025 3.975 3 Si 0.972 3.028 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.260 1.260 7 C -0.551 4.551 8 H 0.082 0.918 9 C 0.211 3.789 10 O -0.591 6.591 11 C 0.111 3.889 12 N -1.037 6.037 13 S 2.617 3.383 14 O -0.990 6.990 15 O -0.996 6.996 16 C -0.608 4.608 17 C 0.069 3.931 18 H 0.090 0.910 19 C -0.135 4.135 20 C -0.149 4.149 21 C 0.034 3.966 22 O -0.415 6.415 23 C 0.135 3.865 24 H 0.273 0.727 25 H 0.384 0.616 26 H 0.098 0.902 27 H 0.044 0.956 28 H 0.178 0.822 29 H 0.153 0.847 30 H 0.113 0.887 31 H 0.091 0.909 32 H 0.108 0.892 33 H 0.091 0.909 34 H 0.078 0.922 35 H 0.077 0.923 36 H 0.066 0.934 37 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.546 -12.911 12.587 19.954 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.174 4.174 3 Si 0.797 3.203 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.184 1.184 7 C -0.590 4.590 8 H 0.100 0.900 9 C 0.168 3.832 10 O -0.403 6.403 11 C -0.015 4.015 12 N -0.876 5.876 13 S 2.718 3.282 14 O -0.980 6.980 15 O -0.987 6.987 16 C -0.741 4.741 17 C 0.010 3.990 18 H 0.108 0.892 19 C -0.173 4.173 20 C -0.186 4.186 21 C -0.042 4.042 22 O -0.335 6.335 23 C 0.010 3.990 24 H 0.083 0.917 25 H 0.238 0.762 26 H 0.116 0.884 27 H 0.063 0.937 28 H 0.196 0.804 29 H 0.171 0.829 30 H 0.131 0.869 31 H 0.110 0.890 32 H 0.126 0.874 33 H 0.110 0.890 34 H 0.096 0.904 35 H 0.095 0.905 36 H 0.084 0.916 37 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 7.729 -14.017 12.030 20.024 hybrid contribution 0.012 1.499 0.378 1.546 sum 7.741 -12.518 12.408 19.250 Atomic orbital electron populations 1.69527 1.07482 1.28716 1.50662 1.25864 0.95679 1.02932 0.92969 0.85350 0.78779 0.78149 0.78052 1.20620 1.21202 1.18364 1.21876 0.94455 0.90608 1.52023 0.90012 1.20367 0.86101 0.92468 0.84214 1.86040 1.47803 1.49549 1.56866 1.23646 0.98671 0.77360 1.01838 1.60096 1.53756 1.19781 1.53962 1.04515 0.75699 0.71811 0.76164 1.93501 1.35617 1.85185 1.83735 1.93485 1.86406 1.68218 1.50625 1.30665 1.18238 1.06039 1.19125 1.22932 0.83818 0.92838 0.99420 0.89226 1.23314 0.99429 1.00528 0.94075 1.23186 0.92349 0.99737 1.03366 1.23455 0.99101 0.94335 0.87287 1.88559 1.27485 1.71163 1.46331 1.23113 0.93267 0.91911 0.90729 0.91749 0.76209 0.88367 0.93742 0.80425 0.82900 0.86864 0.88995 0.87395 0.89020 0.90393 0.90450 0.91554 0.86115 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -48.61 11.20 21.45 0.24 -48.37 16 2 C 0.03 1.27 5.40 84.66 0.46 1.73 16 3 Si 0.97 39.40 29.54 68.60 2.03 41.43 16 4 H -0.28 -11.41 7.11 99.48 0.71 -10.70 16 5 H -0.29 -11.59 7.11 99.48 0.71 -10.88 16 6 H -0.26 -9.93 7.11 99.48 0.71 -9.22 16 7 C -0.55 -27.23 8.61 25.60 0.22 -27.01 16 8 H 0.08 3.76 7.81 -2.91 -0.02 3.73 16 9 C 0.21 10.38 1.40 -10.88 -0.02 10.36 16 10 O -0.59 -32.69 13.48 -148.98 -2.01 -34.70 16 11 C 0.11 4.99 8.32 86.44 0.72 5.71 16 12 N -1.04 -42.38 4.00 -532.72 -2.13 -44.51 16 13 S 2.62 99.81 5.76 -56.49 -0.33 99.48 16 14 O -0.99 -46.21 17.46 -124.50 -2.17 -48.38 16 15 O -1.00 -42.98 18.02 -127.65 -2.30 -45.28 16 16 C -0.61 -14.46 5.93 71.98 0.43 -14.03 16 17 C 0.07 1.55 3.48 31.26 0.11 1.66 16 18 H 0.09 1.93 8.14 -2.38 -0.02 1.91 16 19 C -0.13 -1.81 6.57 32.05 0.21 -1.60 16 20 C -0.15 -1.74 7.02 31.86 0.22 -1.51 16 21 C 0.03 0.64 7.79 72.45 0.56 1.20 16 22 O -0.41 -11.85 10.23 -145.92 -1.49 -13.34 16 23 C 0.13 5.45 8.31 86.49 0.72 6.17 16 24 H 0.27 13.66 8.31 -92.71 -0.77 12.89 16 25 H 0.38 21.65 6.60 -74.06 -0.49 21.17 16 26 H 0.10 3.90 8.09 -2.39 -0.02 3.88 16 27 H 0.04 2.20 8.14 -2.39 -0.02 2.18 16 28 H 0.18 2.90 8.14 -2.39 -0.02 2.88 16 29 H 0.15 3.24 8.14 -2.39 -0.02 3.22 16 30 H 0.11 0.98 8.14 -2.39 -0.02 0.96 16 31 H 0.09 1.12 8.06 -2.39 -0.02 1.11 16 32 H 0.11 0.79 8.14 -2.39 -0.02 0.78 16 33 H 0.09 0.86 8.14 -2.38 -0.02 0.84 16 34 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 35 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 36 H 0.07 2.75 8.14 -2.39 -0.02 2.73 16 37 H 0.12 3.88 8.09 -2.39 -0.02 3.86 16 Total: -1.00 -73.14 322.22 -3.95 -77.09 By element: Atomic # 1 Polarization: 33.34 SS G_CDS: 0.59 Total: 33.93 kcal Atomic # 6 Polarization: -20.96 SS G_CDS: 3.63 Total: -17.33 kcal Atomic # 7 Polarization: -90.99 SS G_CDS: -1.89 Total: -92.88 kcal Atomic # 8 Polarization: -133.73 SS G_CDS: -7.98 Total: -141.71 kcal Atomic # 14 Polarization: 39.40 SS G_CDS: 2.03 Total: 41.43 kcal Atomic # 16 Polarization: 99.81 SS G_CDS: -0.33 Total: 99.48 kcal Total: -73.14 -3.95 -77.09 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000189060708.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.142 kcal (2) G-P(sol) polarization free energy of solvation -73.141 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -152.283 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.945 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.087 kcal (6) G-S(sol) free energy of system = (1) + (5) -156.229 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds