Wall clock time and date at job start Tue Mar 31 2020 02:58:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13592 * 1 3 3 C 1.43205 * 179.97438 * 2 1 4 4 C 1.39626 * 120.22861 * 260.27374 * 3 2 1 5 5 F 1.35092 * 120.04093 * 0.02562 * 4 3 2 6 6 C 1.38420 * 119.91260 * 179.76604 * 4 3 2 7 7 C 1.38326 * 120.40419 * 0.49729 * 6 4 3 8 8 C 1.38178 * 120.47161 * 359.78093 * 7 6 4 9 9 C 1.39244 * 120.06987 * 359.95740 * 8 7 6 10 10 C 1.47804 * 120.20393 * 179.97438 * 9 8 7 11 11 O 1.21549 * 120.00356 * 180.02562 * 10 9 8 12 12 N 1.34779 * 119.99538 * 0.02562 * 10 9 8 13 13 C 1.46497 * 119.99997 * 179.97438 * 12 10 9 14 14 C 1.50704 * 109.47585 * 180.02562 * 13 12 10 15 15 O 1.21298 * 119.99670 * 359.97438 * 14 13 12 16 16 N 1.34775 * 120.00429 * 180.02562 * 14 13 12 17 17 C 1.37098 * 120.00020 * 179.97438 * 16 14 13 18 18 H 1.08001 * 119.99836 * 0.02562 * 17 16 14 19 19 C 1.38946 * 119.99891 * 179.97438 * 17 16 14 20 20 N 1.31411 * 120.00124 * 179.97438 * 19 17 16 21 21 Si 1.86799 * 119.99978 * 0.02562 * 19 17 16 22 22 H 1.48508 * 109.47256 * 90.00243 * 21 19 17 23 23 H 1.48502 * 109.47033 * 209.99691 * 21 19 17 24 24 H 1.48497 * 109.47445 * 330.00021 * 21 19 17 25 25 H 1.08004 * 119.79746 * 180.23495 * 6 4 3 26 26 H 1.08001 * 119.76751 * 179.76240 * 7 6 4 27 27 H 1.08004 * 119.96534 * 179.97438 * 8 7 6 28 28 H 0.97003 * 120.00286 * 0.02562 * 12 10 9 29 29 H 1.09003 * 109.47644 * 300.00313 * 13 12 10 30 30 H 1.09000 * 109.47503 * 59.99937 * 13 12 10 31 31 H 0.97000 * 120.00012 * 359.97438 * 16 14 13 32 32 H 0.96999 * 120.00470 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2708 0.2048 1.1891 5 9 2.6008 0.4021 2.3454 6 6 4.6550 0.1993 1.1824 7 6 5.3486 0.0028 0.0018 8 6 4.6695 -0.1951 -1.1852 9 6 3.2772 -0.1987 -1.2003 10 6 2.5478 -0.4095 -2.4684 11 8 1.3324 -0.4116 -2.4774 12 7 3.2306 -0.5995 -3.6149 13 6 2.5078 -0.8090 -4.8717 14 6 3.4957 -0.9954 -5.9944 15 8 4.6865 -0.9565 -5.7671 16 7 3.0561 -1.2042 -7.2513 17 6 3.9549 -1.3732 -8.2726 18 1 5.0152 -1.3395 -8.0700 19 6 3.5017 -1.5890 -9.5682 20 7 4.3632 -1.7506 -10.5474 21 14 1.6678 -1.6481 -9.9185 22 1 1.1812 -0.2827 -10.2413 23 1 1.4127 -2.5496 -11.0707 24 1 0.9515 -2.1590 -8.7223 25 1 5.1968 0.3536 2.1039 26 1 6.4286 0.0042 0.0078 27 1 5.2193 -0.3473 -2.1023 28 1 4.2006 -0.5982 -3.6076 29 1 1.8822 -1.6976 -4.7875 30 1 1.8808 0.0582 -5.0793 31 1 2.1038 -1.2349 -7.4332 32 1 4.0468 -1.9016 -11.4518 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000344123497.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:58:12 Heat of formation + Delta-G solvation = -49.771341 kcal Electronic energy + Delta-G solvation = -21376.363081 eV Core-core repulsion = 17638.215130 eV Total energy + Delta-G solvation = -3738.147951 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 291.081 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -49.47096 -40.64297 -38.95119 -38.14088 -36.48575 -34.74339 -33.94592 -32.11168 -31.87739 -31.33561 -28.11710 -25.24774 -24.07886 -23.78521 -20.82283 -20.01807 -19.50118 -18.74686 -18.10637 -17.13716 -16.63955 -16.28834 -15.87418 -15.57222 -15.56373 -15.29494 -14.92481 -14.31246 -14.13595 -13.90786 -13.59955 -13.41366 -13.19351 -13.00183 -12.61951 -12.52825 -12.28890 -12.26097 -12.17932 -12.07903 -11.29318 -10.69762 -10.16562 -10.11249 -9.77302 -9.66282 -9.33735 -9.10709 -8.88287 -8.38185 -6.47660 -4.00691 -0.02399 0.36650 2.34723 2.62846 2.81833 2.90355 2.94910 2.99926 3.08852 3.42753 3.45404 3.51937 3.70175 3.97728 4.17880 4.28205 4.42328 4.52825 4.64643 4.98219 5.07032 5.22624 5.41115 5.48702 5.56856 5.66144 5.68021 5.68518 6.08741 6.28421 7.34481 7.43104 7.44592 7.90687 8.04388 8.36493 8.73902 9.21937 9.53657 10.64200 Molecular weight = 291.08amu Principal moments of inertia in cm(-1) A = 0.031137 B = 0.003189 C = 0.002897 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 899.045398 B = 8779.201643 C = 9663.096984 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.380 5.380 2 C 0.250 3.750 3 C -0.003 4.003 4 C 0.136 3.864 5 F -0.124 7.124 6 C -0.130 4.130 7 C -0.067 4.067 8 C -0.093 4.093 9 C -0.059 4.059 10 C 0.548 3.452 11 O -0.527 6.527 12 N -0.694 5.694 13 C 0.105 3.895 14 C 0.436 3.564 15 O -0.580 6.580 16 N -0.573 5.573 17 C -0.312 4.312 18 H 0.123 0.877 19 C 0.047 3.953 20 N -0.872 5.872 21 Si 0.878 3.122 22 H -0.268 1.268 23 H -0.274 1.274 24 H -0.267 1.267 25 H 0.152 0.848 26 H 0.151 0.849 27 H 0.151 0.849 28 H 0.413 0.587 29 H 0.089 0.911 30 H 0.089 0.911 31 H 0.375 0.625 32 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.724 3.463 20.753 21.110 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.056 5.056 2 C -0.066 4.066 3 C -0.008 4.008 4 C 0.114 3.886 5 F -0.102 7.102 6 C -0.149 4.149 7 C -0.086 4.086 8 C -0.112 4.112 9 C -0.065 4.065 10 C 0.334 3.666 11 O -0.404 6.404 12 N -0.348 5.348 13 C -0.022 4.022 14 C 0.222 3.778 15 O -0.465 6.465 16 N -0.210 5.210 17 C -0.440 4.440 18 H 0.140 0.860 19 C -0.158 4.158 20 N -0.510 5.510 21 Si 0.704 3.296 22 H -0.193 1.193 23 H -0.199 1.199 24 H -0.192 1.192 25 H 0.170 0.830 26 H 0.169 0.831 27 H 0.169 0.831 28 H 0.253 0.747 29 H 0.107 0.893 30 H 0.107 0.893 31 H 0.208 0.792 32 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -0.089 3.443 20.620 20.905 hybrid contribution -0.619 -0.088 -0.414 0.750 sum -0.708 3.355 20.206 20.495 Atomic orbital electron populations 1.81114 1.11679 1.05883 1.06881 1.24782 0.91952 0.95563 0.94262 1.15820 0.85807 1.06458 0.92720 1.17477 0.90108 1.00580 0.80391 1.91571 1.80584 1.92005 1.46059 1.21326 0.91192 1.01531 1.00881 1.21253 1.01352 0.95245 0.90756 1.21551 0.92141 0.97434 1.00027 1.19867 0.93792 1.00792 0.92018 1.17983 0.87222 0.78069 0.83373 1.90854 1.12977 1.50574 1.86018 1.45536 1.11752 1.71280 1.06230 1.21059 0.94643 1.03251 0.83268 1.19539 0.89190 0.85411 0.83656 1.90533 1.16434 1.56782 1.82762 1.42119 1.08454 1.63375 1.07045 1.19441 0.92233 1.47162 0.85184 0.85974 1.25068 0.98491 0.96923 0.95299 1.69610 1.34171 1.46453 1.00788 0.86682 0.84510 0.79223 0.79154 1.19329 1.19902 1.19216 0.83036 0.83117 0.83126 0.74676 0.89279 0.89258 0.79177 0.91281 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.38 -6.45 18.41 41.83 0.77 -5.68 16 2 C 0.25 3.67 12.41 -22.47 -0.28 3.39 16 3 C 0.00 -0.03 5.77 -106.47 -0.61 -0.65 16 4 C 0.14 1.16 7.27 -39.00 -0.28 0.88 16 5 F -0.12 -1.19 16.80 2.25 0.04 -1.15 16 6 C -0.13 -0.69 10.01 -39.48 -0.40 -1.08 16 7 C -0.07 -0.32 10.02 -39.57 -0.40 -0.72 16 8 C -0.09 -0.67 9.53 -39.23 -0.37 -1.04 16 9 C -0.06 -0.63 5.90 -104.63 -0.62 -1.25 16 10 C 0.55 7.74 7.75 -12.35 -0.10 7.65 16 11 O -0.53 -9.28 14.33 5.32 0.08 -9.20 16 12 N -0.69 -9.82 5.48 -62.44 -0.34 -10.16 16 13 C 0.11 1.68 6.15 -5.19 -0.03 1.65 16 14 C 0.44 8.96 7.85 -10.98 -0.09 8.88 16 15 O -0.58 -13.56 15.24 5.54 0.08 -13.48 16 16 N -0.57 -12.72 5.09 -10.96 -0.06 -12.78 16 17 C -0.31 -8.29 10.16 -14.93 -0.15 -8.44 16 18 H 0.12 3.69 7.39 -52.49 -0.39 3.30 16 19 C 0.05 1.22 5.50 -17.47 -0.10 1.13 16 20 N -0.87 -24.27 13.96 55.50 0.77 -23.50 16 21 Si 0.88 18.54 27.74 -169.99 -4.71 13.83 16 22 H -0.27 -5.57 7.11 56.52 0.40 -5.17 16 23 H -0.27 -5.82 7.11 56.52 0.40 -5.42 16 24 H -0.27 -5.16 6.52 56.52 0.37 -4.79 16 25 H 0.15 0.39 8.06 -52.48 -0.42 -0.03 16 26 H 0.15 0.27 8.06 -52.49 -0.42 -0.15 16 27 H 0.15 0.94 6.40 -52.48 -0.34 0.60 16 28 H 0.41 5.40 5.47 -40.82 -0.22 5.18 16 29 H 0.09 1.35 8.14 -51.93 -0.42 0.92 16 30 H 0.09 1.34 8.14 -51.93 -0.42 0.92 16 31 H 0.37 7.38 5.76 -40.82 -0.24 7.14 16 32 H 0.28 7.10 8.31 -40.82 -0.34 6.77 16 LS Contribution 301.82 15.07 4.55 4.55 Total: -1.00 -33.62 301.82 -4.28 -37.90 By element: Atomic # 1 Polarization: 11.30 SS G_CDS: -2.04 Total: 9.26 kcal Atomic # 6 Polarization: 13.82 SS G_CDS: -3.42 Total: 10.40 kcal Atomic # 7 Polarization: -53.26 SS G_CDS: 1.15 Total: -52.12 kcal Atomic # 8 Polarization: -22.84 SS G_CDS: 0.16 Total: -22.68 kcal Atomic # 9 Polarization: -1.19 SS G_CDS: 0.04 Total: -1.15 kcal Atomic # 14 Polarization: 18.54 SS G_CDS: -4.71 Total: 13.83 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -33.62 -4.28 -37.90 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344123497.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.871 kcal (2) G-P(sol) polarization free energy of solvation -33.618 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.489 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.283 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.900 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.771 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds